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authorMohammad Akhlaghi <mohammad@akhlaghi.org>2019-03-22 00:08:17 +0000
committerMohammad Akhlaghi <mohammad@akhlaghi.org>2019-03-22 00:08:17 +0000
commit90f6b5b44a1cda18990c2f74726f5bf2d1c143c2 (patch)
tree6ac3dabce10b3050963348080b0925575b7eabdb /reproducible-paper.tex
parent823a2a6cd2f10710cb9ea7d5958e66da2e34bafd (diff)
Using template instead of pipeline
The word "pipeline" is confusing, so we refer to the blank project as "template" now.
Diffstat (limited to 'reproducible-paper.tex')
-rw-r--r--reproducible-paper.tex38
1 files changed, 19 insertions, 19 deletions
diff --git a/reproducible-paper.tex b/reproducible-paper.tex
index b188711..2abf09e 100644
--- a/reproducible-paper.tex
+++ b/reproducible-paper.tex
@@ -95,55 +95,56 @@
\end{frame}
- \begin{frame}{Values are the pipeline's final product}
+ \begin{frame}{Values come from a single file}
All the \LaTeX{} macros (processing inputs and outputs) come from
a \alert{single file}. This file is the \alert{final product} of
- the \emph{reproduction pipeline}.
+ the analysis steps.
\begin{center}
- \includegraphics[width=0.8\linewidth]{img/reproducible-macros.png}
+ \includegraphics[width=0.8\linewidth]{img/reproducible-macros.png}
\end{center}
\end{frame}
- \begin{frame}{Values are the pipeline's final product}
+ \begin{frame}{Values come from a single file}
All the \LaTeX{} macros (processing inputs and outputs) come from
a \alert{single file}. This file is the \alert{final product} of
- the \emph{reproduction pipeline}.
+ the analysis steps.
\begin{center}
- \includegraphics[width=0.8\linewidth]{img/reproducible-macros-highlighted.png}
+ \includegraphics[width=0.8\linewidth]{img/reproducible-macros-highlighted.png}
\end{center}
\end{frame}
\begin{frame}{Values written during analysis}
- Various steps of the analysis pipeline write the macro values as
- soon as they are calculated internally.
+ Various steps of the analysis write the macro values as soon as
+ they are calculated internally.
\begin{center}
- \includegraphics[width=0.8\linewidth]{img/reproducible-write-macro.png}
+ \includegraphics[width=0.8\linewidth]{img/reproducible-write-macro.png}
\end{center}
\end{frame}
\begin{frame}{Values written during analysis}
- Various steps of the analysis pipeline write the macro values as
- soon as they are calculated internally.
+ Various steps of the analysis write the macro values as soon as
+ they are calculated internally.
\begin{center}
- \includegraphics[width=0.8\linewidth]{img/reproducible-write-macro-highlight.png}
+ \includegraphics[width=0.8\linewidth]{img/reproducible-write-macro-highlight.png}
\end{center}
\end{frame}
- \begin{frame}{Reproducible science: Pipeline is managed through a Makefile}
+ \begin{frame}{Reproducible science: Template is managed through a Makefile}
\small
\begin{columns}
\column{5.5cm}
- The whole pipeline is managed by Makefiles (example from
+ All steps (downloading and analysis) is managed by Makefiles
+ (example from
\textcolor{blue}{\small\href{https://doi.org/10.5281/zenodo.1164774}{zenodo.1164774}}):
\begin{itemize}
@@ -210,7 +211,7 @@
- \begin{frame}{Publication of the pipeline}
+ \begin{frame}{Publication of the project}
A reproducible project using this template will have the following
(\alert{plain text}) components:
@@ -224,7 +225,8 @@
\alert{negligible} compared to a single figure in a paper
(usually $\sim100$ kilo-bytes).
- \vspace{1cm} The reproduction pipeline can be \alert{published} in
+ \vspace{1cm} The project's pipeline (customized template) can be
+ \alert{published} in
\begin{itemize}
\item \alert{arXiv}: uploaded with the \TeX{} source to always
stay with the paper \\(for example
@@ -241,9 +243,7 @@
\begin{frame}
- A template/blank pipeline has been written and is ready to use
- (see the template's
- \textcolor{blue}{\href{https://gitlab.com/makhlaghi/reproducible-paper-output/raw/master/paper.pdf}{output}}):
+ The template is ready to use in the link below:
\textcolor{blue}{\footnotesize\url{https://gitlab.com/makhlaghi/reproducible-paper}}