diff options
author | Mohammad Akhlaghi <mohammad@akhlaghi.org> | 2019-03-22 00:08:17 +0000 |
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committer | Mohammad Akhlaghi <mohammad@akhlaghi.org> | 2019-03-22 00:08:17 +0000 |
commit | 90f6b5b44a1cda18990c2f74726f5bf2d1c143c2 (patch) | |
tree | 6ac3dabce10b3050963348080b0925575b7eabdb | |
parent | 823a2a6cd2f10710cb9ea7d5958e66da2e34bafd (diff) |
Using template instead of pipeline
The word "pipeline" is confusing, so we refer to the blank project as
"template" now.
-rw-r--r-- | reproducible-paper.tex | 38 |
1 files changed, 19 insertions, 19 deletions
diff --git a/reproducible-paper.tex b/reproducible-paper.tex index b188711..2abf09e 100644 --- a/reproducible-paper.tex +++ b/reproducible-paper.tex @@ -95,55 +95,56 @@ \end{frame} - \begin{frame}{Values are the pipeline's final product} + \begin{frame}{Values come from a single file} All the \LaTeX{} macros (processing inputs and outputs) come from a \alert{single file}. This file is the \alert{final product} of - the \emph{reproduction pipeline}. + the analysis steps. \begin{center} - \includegraphics[width=0.8\linewidth]{img/reproducible-macros.png} + \includegraphics[width=0.8\linewidth]{img/reproducible-macros.png} \end{center} \end{frame} - \begin{frame}{Values are the pipeline's final product} + \begin{frame}{Values come from a single file} All the \LaTeX{} macros (processing inputs and outputs) come from a \alert{single file}. This file is the \alert{final product} of - the \emph{reproduction pipeline}. + the analysis steps. \begin{center} - \includegraphics[width=0.8\linewidth]{img/reproducible-macros-highlighted.png} + \includegraphics[width=0.8\linewidth]{img/reproducible-macros-highlighted.png} \end{center} \end{frame} \begin{frame}{Values written during analysis} - Various steps of the analysis pipeline write the macro values as - soon as they are calculated internally. + Various steps of the analysis write the macro values as soon as + they are calculated internally. \begin{center} - \includegraphics[width=0.8\linewidth]{img/reproducible-write-macro.png} + \includegraphics[width=0.8\linewidth]{img/reproducible-write-macro.png} \end{center} \end{frame} \begin{frame}{Values written during analysis} - Various steps of the analysis pipeline write the macro values as - soon as they are calculated internally. + Various steps of the analysis write the macro values as soon as + they are calculated internally. \begin{center} - \includegraphics[width=0.8\linewidth]{img/reproducible-write-macro-highlight.png} + \includegraphics[width=0.8\linewidth]{img/reproducible-write-macro-highlight.png} \end{center} \end{frame} - \begin{frame}{Reproducible science: Pipeline is managed through a Makefile} + \begin{frame}{Reproducible science: Template is managed through a Makefile} \small \begin{columns} \column{5.5cm} - The whole pipeline is managed by Makefiles (example from + All steps (downloading and analysis) is managed by Makefiles + (example from \textcolor{blue}{\small\href{https://doi.org/10.5281/zenodo.1164774}{zenodo.1164774}}): \begin{itemize} @@ -210,7 +211,7 @@ - \begin{frame}{Publication of the pipeline} + \begin{frame}{Publication of the project} A reproducible project using this template will have the following (\alert{plain text}) components: @@ -224,7 +225,8 @@ \alert{negligible} compared to a single figure in a paper (usually $\sim100$ kilo-bytes). - \vspace{1cm} The reproduction pipeline can be \alert{published} in + \vspace{1cm} The project's pipeline (customized template) can be + \alert{published} in \begin{itemize} \item \alert{arXiv}: uploaded with the \TeX{} source to always stay with the paper \\(for example @@ -241,9 +243,7 @@ \begin{frame} - A template/blank pipeline has been written and is ready to use - (see the template's - \textcolor{blue}{\href{https://gitlab.com/makhlaghi/reproducible-paper-output/raw/master/paper.pdf}{output}}): + The template is ready to use in the link below: \textcolor{blue}{\footnotesize\url{https://gitlab.com/makhlaghi/reproducible-paper}} |