From 90f6b5b44a1cda18990c2f74726f5bf2d1c143c2 Mon Sep 17 00:00:00 2001
From: Mohammad Akhlaghi <mohammad@akhlaghi.org>
Date: Fri, 22 Mar 2019 00:08:17 +0000
Subject: Using template instead of pipeline

The word "pipeline" is confusing, so we refer to the blank project as
"template" now.
---
 reproducible-paper.tex | 38 +++++++++++++++++++-------------------
 1 file changed, 19 insertions(+), 19 deletions(-)

(limited to 'reproducible-paper.tex')

diff --git a/reproducible-paper.tex b/reproducible-paper.tex
index b188711..2abf09e 100644
--- a/reproducible-paper.tex
+++ b/reproducible-paper.tex
@@ -95,55 +95,56 @@
   \end{frame}
 
 
-  \begin{frame}{Values are the pipeline's final product}
+  \begin{frame}{Values come from a single file}
     All the \LaTeX{} macros (processing inputs and outputs) come from
     a \alert{single file}. This file is the \alert{final product} of
-    the \emph{reproduction pipeline}.
+    the analysis steps.
 
     \begin{center}
-    \includegraphics[width=0.8\linewidth]{img/reproducible-macros.png}
+      \includegraphics[width=0.8\linewidth]{img/reproducible-macros.png}
     \end{center}
   \end{frame}
 
 
 
-  \begin{frame}{Values are the pipeline's final product}
+  \begin{frame}{Values come from a single file}
     All the \LaTeX{} macros (processing inputs and outputs) come from
     a \alert{single file}. This file is the \alert{final product} of
-    the \emph{reproduction pipeline}.
+    the analysis steps.
 
     \begin{center}
-    \includegraphics[width=0.8\linewidth]{img/reproducible-macros-highlighted.png}
+      \includegraphics[width=0.8\linewidth]{img/reproducible-macros-highlighted.png}
     \end{center}
   \end{frame}
 
 
   \begin{frame}{Values written during analysis}
-    Various steps of the analysis pipeline write the macro values as
-    soon as they are calculated internally.
+    Various steps of the analysis write the macro values as soon as
+    they are calculated internally.
 
     \begin{center}
-    \includegraphics[width=0.8\linewidth]{img/reproducible-write-macro.png}
+      \includegraphics[width=0.8\linewidth]{img/reproducible-write-macro.png}
     \end{center}
   \end{frame}
 
 
   \begin{frame}{Values written during analysis}
-    Various steps of the analysis pipeline write the macro values as
-    soon as they are calculated internally.
+    Various steps of the analysis write the macro values as soon as
+    they are calculated internally.
 
     \begin{center}
-    \includegraphics[width=0.8\linewidth]{img/reproducible-write-macro-highlight.png}
+      \includegraphics[width=0.8\linewidth]{img/reproducible-write-macro-highlight.png}
     \end{center}
   \end{frame}
 
 
-  \begin{frame}{Reproducible science: Pipeline is managed through a Makefile}
+  \begin{frame}{Reproducible science: Template is managed through a Makefile}
     \small
     \begin{columns}
       \column{5.5cm}
 
-      The whole pipeline is managed by Makefiles (example from
+      All steps (downloading and analysis) is managed by Makefiles
+      (example from
       \textcolor{blue}{\small\href{https://doi.org/10.5281/zenodo.1164774}{zenodo.1164774}}):
 
       \begin{itemize}
@@ -210,7 +211,7 @@
 
 
 
-  \begin{frame}{Publication of the pipeline}
+  \begin{frame}{Publication of the project}
 
     A reproducible project using this template will have the following
     (\alert{plain text}) components:
@@ -224,7 +225,8 @@
     \alert{negligible} compared to a single figure in a paper
     (usually $\sim100$ kilo-bytes).
 
-    \vspace{1cm} The reproduction pipeline can be \alert{published} in
+    \vspace{1cm} The project's pipeline (customized template) can be
+    \alert{published} in
     \begin{itemize}
     \item \alert{arXiv}: uploaded with the \TeX{} source to always
       stay with the paper \\(for example
@@ -241,9 +243,7 @@
 
 
   \begin{frame}
-    A template/blank pipeline has been written and is ready to use
-    (see the template's
-    \textcolor{blue}{\href{https://gitlab.com/makhlaghi/reproducible-paper-output/raw/master/paper.pdf}{output}}):
+    The template is ready to use in the link below:
 
     \textcolor{blue}{\footnotesize\url{https://gitlab.com/makhlaghi/reproducible-paper}}
 
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