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<!DOCTYPE html>
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<title>Maneage -- Managing data lineage</title>
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Webpage of Maneage: a framework for managing data lineage
Copyright (C) 2020, Pedram Ashofteh Ardakani <pedramardakani@pm.me>
Copyright (C) 2020, Mohammad Akhlaghi <mohammad@akhlaghi.org>
This file is part of Maneage. Maneage is free software: you can
redistribute it and/or modify it under the terms of the GNU General
Public License as published by the Free Software Foundation, either
version 3 of the License, or (at your option) any later version.
Maneage is distributed in the hope that it will be useful, but
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<section>
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<div>
<h1>Maneage</h1>
<h2>Managing Data Lineage</h2>
</div>
</div>
<p class="clear">Maneage is a framework for having full control over a project's data lineage (thus producing a <a href="http://akhlaghi.org/reproducible-science.html">reproducible result</a>).
Maneage is a recipient of the <a href="https://www.rd-alliance.org/node/64603">RDA Europe Adoption grant</a> and was featured in a Nature Astronomy "<a href="https://doi.org/10.1038/s41550-021-01402-3">News and Views</a>" article (Kuttel 2021, <a href="https://rdcu.be/cmYVx">free-to-read link</a>).
To learn more about its founding criteria and a basic introduction, see Akhlaghi et al. (2021), <a href="https://doi.org/10.1109/MCSE.2021.3072860">published in CiSE</a> (Gold Open Access), also available in <a href="https://arxiv.org/abs/2006.03018">arXiv:2006.03018</a> (with extended appendix in one PDF).
You can also watch the short talk linked below or see this published <a href="https://www.rd-alliance.org/sites/default/files/RDA%20adoption%20story_IAC_final.pdf">RDA Adoption story</a> (a short PDF).
</p>
<img class="center" src="img/project-flow.svg" width="85%" />
<h3>Video presentation of Maneage:</h3>
<p class="clean">In the box below, you can watch a video of an invited talk at RDA Adoption week 2020 to introduce Maneage (17 minutes, hosted <a href="https://peertube.stream/videos/watch/f8b1b565-0e8d-4279-b7c5-f20e51e1d8da">on PeerTube</a>).
For a more detailed talk (80 minutes), see this <a href="https://peertube.stream/videos/watch/e7fdf27b-61b8-40cd-8306-482d79e4d6c5">invited lecture at CiTIUS</a> (link opens in PeerTube).
The slides are also <a href="pdf/slides-intro.pdf">available as PDF</a>.</p>
<div class="aspect-ratio">
<iframe class="center" sandbox="allow-same-origin allow-scripts allow-popups" title="Maneage introduction (RDA Adoption Week 2020)" src="https://peertube.stream/videos/embed/f8b1b565-0e8d-4279-b7c5-f20e51e1d8da" frameborder="0" allowfullscreen></iframe>
</div>
<p class="clean" style="font-size: 0.7em;">If the video<i>doesn't load</i> after clicking on it, you are probably viewing this page through the HTTP protocol. You have three solutions: 1) either revisit this page through HTTPS at <a href="https://maneage.org">https://maneage.org</a>. 2) watch the video directly <a href="http://peertube.stream/w/f8b1b565-0e8d-4279-b7c5-f20e51e1d8da">on PeerTube</a>. 3) <a href="http://git.maneage.org/videos.git/plain/maneage-intro-rda-2020-06-18.mp4">Download the video</a>.</p>
</section>
<section>
<h3>Start building your project in Maneage</h3>
<p>To start a new project, simply run these commands to clone it from its <a href="http://git.maneage.org/project.git">Git repository</a>.
<pre><code>git clone https://git.maneage.org/project.git <span class="comment"># Clone Maneage, default branch `maneage'.</span>
mv project my-project && cd my-project <span class="comment"># Set custom name and enter directory.</span>
git remote rename origin origin-maneage <span class="comment"># Rename remote server to use `origin' later.</span>
git checkout -b master <span class="comment"># Make new `master' branch, start customizing.</span></code></pre>
</p>
<p>You are now ready to configure and make the raw template with the commands below.
If they are successful, you can start customizing it.
<pre><code>./project configure <span class="comment"># Build all necessary software from source.</span>
./project make <span class="comment"># Do the analysis (download data, run software on data, build PDF).</span></code></pre>
</p>
<p>See the <a href="https://gitlab.com/maneage/project/-/blob/maneage/README-hacking.md#customization-checklist">Customization Checklist</a> in the cloned <code>README-hacking.md</code> file for the next steps to start customizing Maneage for your project.
</p>
<h3>Submitting bugs and suggesting new features</h3>
<p>Development discussions (like list of existing <a href="https://savannah.nongnu.org/bugs/?group=reproduce">bugs</a> and <a href="https://savannah.nongnu.org/task/?group=reproduce">tasks</a>) are currently maintained in <a href="https://savannah.nongnu.org/projects/reproduce/">GNU Savannah</a>.
You can <a href="https://savannah.nongnu.org/account/register.php">register in GNU Savannah</a> to <a href="https://savannah.nongnu.org/bugs/?func=additem&group=reproduce">submit a bug</a> or <a href="https://savannah.nongnu.org/task/?func=additem&group=reproduce">submit a task</a>, or comment on an existing bug or task. If you want to submit a general issue without registering on Savannah, you can <a href="https://savannah.nongnu.org/support/?func=additem&group=reproduce">submit an item</a>.</p>
<h3>Merge/Pull requests</h3>
<p>As you continue customizing Maneage for your own project, you will notice generic improvements that can be useful for other projects too.
In such cases, please send us those changes to implement in the core Maneage branch and let them propagate to all projects using it.
If you look through the history of the Maneage branch, you'll notice many users have already started doing this, and this is how Maneage is planned to grow.
The recommended process is very similar to
<a href="https://www.gnu.org/software/gnuastro/manual/html_node/Forking-tutorial.html">this forking tutorial</a>.
Here is a summary:
</p>
<ol>
<li>Go to the <code>maneage</code> branch and create a new branch from there like below:
<pre><code>git checkout maneage
git branch -b my-fix</code></pre>
</li>
<li>Commit your fix over this new branch.</li>
<li>Build a new project on your favorite Git repository (GitLab, BitBucket, or GitHub for example) and assign it to a new Git remote in your project.
Let's call it <code>my-remote</code>.
You only need to do this once and keep this for future fixes.
</li>
<li>Push your branch to that remote:
<pre><code>git push my-remote my-fix</code></pre>
</li>
<li>Submit a link to your fork and the corresponding branch <a href="http://savannah.nongnu.org/support/?func=additem&group=reproduce">on Savannah</a>.
If you are <a href="https://savannah.nongnu.org/account/register.php">registered on Savannah</a>, you can also submit it as <a href="https://savannah.nongnu.org/bugs/?func=additem&group=reproduce">a bug</a> or <a href="https://savannah.nongnu.org/task/?func=additem&group=reproduce">a task</a>.
</li>
</ol>
</section>
<section>
<h3>Supporting organizations:</h3>
<div class="support">
<div id="logo-rda"><a href="https://cordis.europa.eu/project/id/777388"><img src="./img/rda-europe.png"></a></div>
<div><a href="https://www.iac.es/"><img src="./img/iac-compressed.svg"></a></div>
<div><a href="https://cordis.europa.eu/project/id/339659"><img src="./img/erc-compressed.svg"></a></div>
<div id="logo-mext"><a href="https://www.mext.go.jp/en"><img src="./img/mext-compressed.svg"></a></div>
</div>
</section>
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<ul>
<li><p>Maneage is currently based in the Instituto de Astrofísica de Canarias (IAC).</p></li>
<li><p>Address: IAC, Calle Vía Láctea, s/n, E38205 - La Laguna (Tenerife), Spain.</p></li>
<li><p>Contact: with <a href="https://savannah.nongnu.org/support/?func=additem&group=reproduce">this form</a>, or project PI (<a href="http://akhlaghi.org">Mohammad Akhlaghi</a>).</p></li>
<li><p>Copyright © 2020 Maneage volunteers</p></li>
<li>This page is distributed under GNU General Public License (<a href="https://www.gnu.org/licenses/gpl-3.0.en.html">GPL</a>).</li>
<li><p>All logos are copyrighted by the respective institutions</p></li>
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