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<!DOCTYPE html>
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<title>Maneage -- Managing data lineage</title>
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Webpage of Maneage: a framework for managing data lineage
Copyright (C) 2020, Pedram Ashofteh Ardakani <pedramardakani@pm.me>
Copyright (C) 2020, Mohammad Akhlaghi <mohammad@akhlaghi.org>
This file is part of Maneage. Maneage is free software: you can
redistribute it and/or modify it under the terms of the GNU General
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<h1>Maneage</h1>
<h2>Managing Data Lineage</h2>
</div>
</div>
<p class="clear">Maneage is a framework for having full control over a project's data lineage (thus producing a <a href="http://akhlaghi.org/reproducible-science.html">reproducible result</a>).
Maneage is a recipient of the <a href="https://www.rd-alliance.org/node/64603">RDA Europe Adoption grant</a>.
To learn more about its founding criteria and a basic introduction, see Akhlaghi et al. (2021), <a href="https://doi.org/10.1109/MCSE.2021.3072860">published in CiSE</a> (Gold Open Access), also available in <a href="https://arxiv.org/abs/2006.03018">arXiv:2006.03018</a> (with extended appendix in one PDF).
You can also watch the short talk linked below.
</p>
<img class="center" src="img/project-flow.svg" width="85%" />
<h3>Short video introduction to Maneage:</h3>
<p class="clean">By clicking on the image below, you will be taken to the YouTube (in a new tab) to see an invited talk at RDA Adoption week 2020 to introduce Maneage (20 minutes), the <a href="pdf/slides-intro.pdf">slides</a> are also available. For a more detailed talk (1 hour), see this <a href="https://www.youtube.com/watch?v=XdhRUhoMqw0">invited lecture at CiTIUS</a>.</p>
<a href="https://www.youtube.com/watch?v=O4bdRu1_Yb0" target="_blank"><img class="center" src="img/rda-talk-on-youtube.jpg" width="60%" /></a>
</section>
<section>
<h3>Start building your project in Maneage</h3>
<p>To start a new project, simply run these commands to clone it from its <a href="http://git.maneage.org/project.git">Git repository</a>.
<pre><code>git clone https://git.maneage.org/project.git <span class="comment"># Clone Maneage, default branch `maneage'.</span>
mv project my-project && cd my-project <span class="comment"># Set custom name and enter directory.</span>
git remote rename origin origin-maneage <span class="comment"># Rename remote server to use `origin' later.</span>
git checkout -b master <span class="comment"># Make new `master' branch, start customizing.</span></code></pre>
</p>
<p>You are now ready to configure and make the raw template with the commands below.
If they are successful, you can start customizing it.
<pre><code>./project configure <span class="comment"># Build all necessary software from source.</span>
./project make <span class="comment"># Do the analysis (download data, run software on data, build PDF).</span></code></pre>
</p>
<p>See the <a href="https://gitlab.com/maneage/project/-/blob/maneage/README-hacking.md#customization-checklist">Customization Checklist</a> in the cloned <code>README-hacking.md</code> file for the next steps to start customizing Maneage for your project.
</p>
<h3>Submitting bugs and suggesting new features</h3>
<p>Development discussions (like list of existing <a href="https://savannah.nongnu.org/bugs/?group=reproduce">bugs</a> and <a href="https://savannah.nongnu.org/task/?group=reproduce">tasks</a>) are currently maintained in <a href="https://savannah.nongnu.org/projects/reproduce/">GNU Savannah</a>.
You can <a href="https://savannah.nongnu.org/account/register.php">register in GNU Savannah</a> to <a href="https://savannah.nongnu.org/bugs/?func=additem&group=reproduce">submit a bug</a> or <a href="https://savannah.nongnu.org/task/?func=additem&group=reproduce">submit a task</a>, or comment on an existing bug or task. If you want to submit a general issue without registering on Savannah, you can <a href="https://savannah.nongnu.org/support/?func=additem&group=reproduce">submit an item</a>.</p>
<h3>Merge/Pull requests</h3>
<p>As you continue customizing Maneage for your own project, you will notice generic improvements that can be useful for other projects too.
In such cases, please send us those changes to implement in the core Maneage branch and let them propagate to all projects using it.
If you look through the history of the Maneage branch, you'll notice many users have already started doing this, and this is how Maneage is planned to grow.
The recommended process is very similar to
<a href="https://www.gnu.org/software/gnuastro/manual/html_node/Forking-tutorial.html">this forking tutorial</a>.
Here is a summary:
</p>
<ol>
<li>Go to the <code>maneage</code> branch and create a new branch from there like below:
<pre><code>git checkout maneage
git branch -b my-fix</code></pre>
</li>
<li>Commit your fix over this new branch.</li>
<li>Build a new project on your favorite Git repository (GitLab, BitBucket, or GitHub for example) and assign it to a new Git remote in your project.
Let's call it <code>my-remote</code>.
You only need to do this once and keep this for future fixes.
</li>
<li>Push your branch to that remote:
<pre><code>git push my-remote my-fix</code></pre>
</li>
<li>Submit a link to your fork and the corresponding branch <a href="http://savannah.nongnu.org/support/?func=additem&group=reproduce">on Savannah</a>.
If you are <a href="https://savannah.nongnu.org/account/register.php">registered on Savannah</a>, you can also submit it as <a href="https://savannah.nongnu.org/bugs/?func=additem&group=reproduce">a bug</a> or <a href="https://savannah.nongnu.org/task/?func=additem&group=reproduce">a task</a>.
</li>
</ol>
</section>
<section>
<h3>Supporting organizations:</h3>
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<div id="logo-rda"><a href="https://cordis.europa.eu/project/id/777388"><img src="./img/rda-europe.png"></a></div>
<div><a href="https://www.iac.es/"><img src="./img/iac-compressed.svg"></a></div>
<div><a href="https://cordis.europa.eu/project/id/339659"><img src="./img/erc-compressed.svg"></a></div>
<div id="logo-mext"><a href="https://www.mext.go.jp/en"><img src="./img/mext-compressed.svg"></a></div>
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<li><p>Maneage is currently based in the Instituto de Astrofísica de Canarias (IAC).</p></li>
<li><p>Address: IAC, Calle Vía Láctea, s/n, E38205 - La Laguna (Tenerife), Spain.</p></li>
<li><p>Contact: with <a href="https://savannah.nongnu.org/support/?func=additem&group=reproduce">this form</a>, or project PI (<a href="http://akhlaghi.org">Mohammad Akhlaghi</a>).</p></li>
<li><p>Copyright © 2020 Maneage volunteers</p></li>
<li>This page is distributed under GNU General Public License (<a href="https://www.gnu.org/licenses/gpl-3.0.en.html">GPL</a>).</li>
<li><p>All logos are copyrighted by the respective institutions</p></li>
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