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Webpage of Maneage: a framework for managing data lineage
Copyright (C) 2020-2025 Pedram Ashofteh Ardakani <pedramardakani@pm.me>
Copyright (C) 2020-2025 Mohammad Akhlaghi <mohammad@akhlaghi.org>
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<h1>Maneage</h1><h2>Managing Data Lineage</h2>
<p>Copyright © 2018-2025 Mohammad Akhlaghi <a href="mailto:mohammad@akhlaghi.org">mohammad@akhlaghi.org</a><br />
Copyright © 2020-2025 Raul Infante-Sainz <a href="mailto:infantesainz@gmail.com">infantesainz@gmail.com</a><br />
<a href="#page-footer">License Conditions</a></p>
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<hr />
<p align="right">Next: <a href="about-make.html">Why Make?</a>, Previous: <a href="about-introduction.html">Introduction</a> Up: <a href="about.html">About</a> </p>
<h2>Citation</h2>
<p>If you use Maneage in your project please cite
Akhlaghi et
al. (2021, <a href="https://doi.org/10.1109/MCSE.2021.3072860">CiSE</a> in press, <a href="https://arxiv.org/abs/2006.03018">arXiv:2006.03018</a>).</p>
<p>Also, when your paper is published, don't forget to add a notice in your
own paper (in coordination with the publishing editor) that the paper is
fully reproducible and possibly add a sentence or paragraph in the end of
the paper shortly describing the concept. This will help spread the word
and encourage other scientists to also manage and publish their projects in
a reproducible manner.</p>
<h2>Published works using Maneage</h2>
<p>The list below shows some of the works that have already been published
with (earlier versions of) Maneage. Previously it was called
"Reproducible paper template". Maneage is still evolving, so some
details may be different in them. The more recent ones can be used as
good working examples.</p>
<ul>
<li> <p>Saremi et
al. (<a href="https://ui.adsabs.harvard.edu/abs/2025arXiv250802780S">2025</a>,
Astronomy and Astrophysics (accepted). The
project's version controlled source is on
<a href="https://gitlab.com/nasim-projects/pipeline">Gitlab</a>,
necessary software, outputs and backup of
history are available
at <a href="https://doi.org/10.5281/zenodo.16152699">zenodo.16152699</a>;
and the archived git history is available at
<a href="https://archive.softwareheritage.org/swh:1:dir:b3657cfb6053fd976695bd63c15cb99e5095648a;origin=https://gitlab.com/nasim-projects/pipeline;visit=swh:1:snp:ab7c6f0b9999f42d77154103c1bc082fa23b325c;anchor=swh:1:rev:afeb282c01983cba2a11eb4b2f25d5a40d35c164">swh:1:dir:b3657cfb6053fd976695bd63c15cb99e5095648a</a>.</p>
<li> <p>Eskandarlou & Akhlaghi
(<a href="https://ui.adsabs.harvard.edu/abs/2024RNAAS...8..168E">2024</a>,
Research Notes in American Astronomical Society
(RNAAS), Volume 8, Issue 6, id.168. The
project's version controlled source is on
<a href="https://codeberg.org/gnuastro/papers">Codeberg</a>
(the 'polar-plot' branch), necessary software,
outputs and backup of history are available
at <a href="https://doi.org/10.5281/zenodo.11403643">zenodo.11403643</a>;
and the archived git history is available at
<a href="https://archive.softwareheritage.org/swh:1:dir:4e09bf85f9f87336fa55920bf67e7bcf6d58bbd5;origin=https://codeberg.org/gnuastro/papers;visit=swh:1:snp:557ee1a90de465659659ecc46df0c5ce29d0bb61;anchor=swh:1:rev:375e12e52080006be6a28e10980e79ef54d13d1d">swh:1:dir:4e09bf85f9f87336fa55920bf67e7bcf6d58bbd5</a>.</p>
<li> <p>Infante-Sainz et al.
(<a href="https://ui.adsabs.harvard.edu/abs/2024RNAAS...8...22I">2024</a>,
Research Notes in American Astronomical Society
(RNAAS), Volume 8, Issue 1, id.22. The
project's version controlled source is on
<a href="https://codeberg.org/gnuastro/papers">Codeberg</a>
(the 'radial-profile' branch), necessary
software, outputs and backup of history are
available
at <a href="https://doi.org/10.5281/zenodo.10124582">zenodo.10124582</a>;
and the archived git history is available at
<a href="https://archive.softwareheritage.org/swh:1:dir:d5029e066916cb64f0d95d20eb88294acc78b2b1;origin=https://codeberg.org/gnuastro/papers;visit=swh:1:snp:b065324c2ef3b48bc26e8f30e48102a1abd2052f;anchor=swh:1:rev:61764447b16da44538e5ddbf7fb69937ba138e81">swh:1:dir:d5029e066916cb64f0d95d20eb88294acc78b2b1</a>.</p>
<li> <p>Infante-Sainz & Akhlaghi.
(<a href="https://ui.adsabs.harvard.edu/abs/2024RNAAS...8...10I">2024</a>,
Research Notes in American Astronomical Society
(RNAAS), Volume 8, Issue 1, id.10. The
project's version controlled source is on
<a href="https://codeberg.org/gnuastro/papers">Codeberg</a>
(the 'color-faint-gray' branch), necessary
software, outputs and backup of history are
available
at <a href="https://doi.org/10.5281/zenodo.10058165">zenodo.10058165</a>;
and the archived git history is available at
<a href="https://archive.softwareheritage.org/swh:1:dir:1064a48d4bb58d6684c3df33c6633a04d4141d2d;origin=https://codeberg.org/gnuastro/papers;visit=swh:1:snp:a083ff647c571f895d1ccc9f7432fa1b9a1d03a8;anchor=swh:1:rev:ff77b619daa50b05ddd83206d979d1f8a53d040b">swh:1:dir:1064a48d4bb58d6684c3df33c6633a04d4141d2d</a>.</p>
<li> <p>Eskandarlou et al.
(<a href="https://ui.adsabs.harvard.edu/abs/2023RNAAS...7..269E">2023</a>,
Research Notes in American Astronomical Society
(RNAAS), Volume 7, Issue 12, id.269. The
project's version controlled source is on
<a href="https://codeberg.org/gnuastro/papers">Codeberg</a>
(the 'zeropoint' branch), necessary software,
outputs and backup of history are available
at <a href="https://doi.org/10.5281/zenodo.10256845">zenodo.10256845</a>;
and the archived git history is available at
<a href="https://archive.softwareheritage.org/swh:1:dir:8b2d1f63be96de3de03aa3e2bb68fa7fa52df56f;origin=https://codeberg.org/gnuastro/papers;visit=swh:1:snp:e37e226bab517eef24d854467682b2fcf5d7dc32;anchor=swh:1:rev:ea682783d83707c0e1d114a5de74a100be9f545d">swh:1:dir:8b2d1f63be96de3de03aa3e2bb68fa7fa52df56f</a>.</p>
<li> <p>Akhlaghi
(<a href="https://ui.adsabs.harvard.edu/abs/2023RNAAS...7..211A">2023</a>,
Research Notes in American Astronomical Society
(RNAAS), Volume 7, Issue 10, id.211. The
project's version controlled source is on
<a href="https://codeberg.org/gnuastro/papers">Codeberg</a>
(the 'pointing-simulate' branch).</p>
<li> <p>Borkowska & Roukema
(<a href="https://ui.adsabs.harvard.edu/abs/2022CQGra..39u5007B">2022</a>,
Classical and Quantum Gravity, November
2022. The project's version controlled source
is on
<a href="https://codeberg.org/boud/gevcurvtest">Codeberg</a>. Necessary
software, outputs and backup of history are
available
at <a href="https://doi.org/10.5281/zenodo.5806027">zenodo.5806027</a>;
and the archived git history is available at
<a href="https://archive.softwareheritage.org/browse/revision/54398b720ddbac269ede30bf1e27fe27f07567f7">swh:1:rev:54398b720ddbac269ede30bf1e27fe27f07567f7</a>.</p>
<li><p>Peper & Roukema
(<a href="https://ui.adsabs.harvard.edu/abs/2021MNRAS.tmp.1317P">2021</a>,
MNRAS, 505, 1223): The live version of the
controlled source
is <a href="https://codeberg.org/boud/elaphrocentre">at
Codeberg</a>; the main input dataset, a software
snapshot, the software tarballs, the project
outputs and editing history are available at
<a href="https://zenodo.org/record/4699702">zenodo.4699702</a>.</p></li>
<li><p>Roukema (<a href="https://arxiv.org/abs/2007.11779">2021</a>, submitted),
The live version of the controlled source
is <a href="https://codeberg.org/boud/subpoisson">at
Codeberg</a>; the main input dataset, a software
snapshot, the software tarballs, the project
outputs and editing history are available
at <a href="https://zenodo.org/record/4765705">zenodo.4765705</a>.</p></li>
<li><p>Akhlaghi et al. (<a href="https://arxiv.org/abs/2006.03018">2021</a>, CiSE, in press):
The project's version controlled source
is <a href="https://gitlab.com/makhlaghi/maneage-paper">on
Gitlab</a>, necessary software, outputs and
backup of history is available in
<a href="https://doi.org/10.5281/zenodo.3872248">zenodo.3872248</a>.
</p></li>
<li><p>Infante-Sainz et
al. (<a href="https://ui.adsabs.harvard.edu/abs/2020MNRAS.491.5317I">2020</a>,
MNRAS, 491, 5317): The version controlled project source is available
<a href="https://gitlab.com/infantesainz/sdss-extended-psfs-paper">on GitLab</a>
and is also archived on Zenodo with all the necessary software tarballs:
<a href="https://zenodo.org/record/3524937">zenodo.3524937</a>.</p></li>
<li><p>Akhlaghi (<a href="https://arxiv.org/abs/1909.11230">2019</a>, IAU Symposium
355). The version controlled project source is available <a href="https://gitlab.com/makhlaghi/iau-symposium-355">on
GitLab</a> and is also
archived on Zenodo with all the necessary software tarballs:
<a href="https://doi.org/10.5281/zenodo.3408481">zenodo.3408481</a>.</p></li>
<li><p>Section 7.3 of Bacon et
al. (<a href="http://adsabs.harvard.edu/abs/2017A%26A...608A...1B">2017</a>, A&A
608, A1): The version controlled project source is available <a href="https://gitlab.com/makhlaghi/muse-udf-origin-only-hst-magnitudes">on
GitLab</a>
and a snapshot of the project along with all the necessary input
datasets and outputs is available in
<a href="https://doi.org/10.5281/zenodo.1164774">zenodo.1164774</a>.</p></li>
<li><p>Section 4 of Bacon et
al. (<a href="http://adsabs.harvard.edu/abs/2017A%26A...608A...1B">2017</a>, A&A,
608, A1): The version controlled project is available <a href="https://gitlab.com/makhlaghi/muse-udf-photometry-astrometry">on
GitLab</a> and
a snapshot of the project along with all the necessary input datasets is
available in <a href="https://doi.org/10.5281/zenodo.1163746">zenodo.1163746</a>.</p></li>
<li><p>Akhlaghi & Ichikawa
(<a href="http://adsabs.harvard.edu/abs/2015ApJS..220....1A">2015</a>, ApJS, 220,
1): The version controlled project is available <a href="https://gitlab.com/makhlaghi/NoiseChisel-paper">on
GitLab</a>. This is the
very first (and much less mature!) incarnation of Maneage: the history
of Maneage started more than two years after this paper was
published. It is a very rudimentary/initial implementation, thus it is
only included here for historical reasons. However, the project source
is complete, accurate and uploaded to arXiv along with the paper.</p></li>
</ul>
<p align="right">Next: <a href="about-make.html">Why Make?</a>, Previous: <a href="about-introduction.html">Introduction</a> Up: <a href="about.html">About</a> </p>
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<li><p>Maneage is currently based in the Centro de Estudios de Física del Cosmos de Aragón (CEFCA).</p></li>
<li><p>Address: CEFCA, Plaza San Juan 1, Planta 2, Teruel, Spain, 44001.</p></li>
<li><p>Contact: with <a href="https://savannah.nongnu.org/support/?func=additem&group=reproduce">this form</a>, or <a href="https://app.element.io/#/room/#maneage-general:matrix.org">#maneage-general:matrix.org</a>, or project PI (<a href="http://akhlaghi.org">Mohammad Akhlaghi</a>).</p></li>
<li><p>Copyright © 2020-2025 Maneage volunteers</p></li>
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