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| -rw-r--r-- | slides-intro-short.tex | 62 | ||||
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diff --git a/img/SWHIDs.png b/img/SWHIDs.png Binary files differnew file mode 100644 index 0000000..7f1a705 --- /dev/null +++ b/img/SWHIDs.png diff --git a/img/binary-blue.jpg b/img/binary-blue.jpg Binary files differnew file mode 100644 index 0000000..3901e79 --- /dev/null +++ b/img/binary-blue.jpg diff --git a/img/digital-tunnel.jpg b/img/digital-tunnel.jpg Binary files differdeleted file mode 100644 index c316553..0000000 --- a/img/digital-tunnel.jpg +++ /dev/null diff --git a/img/nature-astronomy.png b/img/nature-astronomy.png Binary files differindex e8cb4e4..548afdf 100644 --- a/img/nature-astronomy.png +++ b/img/nature-astronomy.png diff --git a/img/nature-cartoon.jpg b/img/nature-cartoon.jpg Binary files differdeleted file mode 100644 index c4ab023..0000000 --- a/img/nature-cartoon.jpg +++ /dev/null diff --git a/img/reproducibility-crisis.jpg b/img/reproducibility-crisis.jpg Binary files differdeleted file mode 100644 index 362576a..0000000 --- a/img/reproducibility-crisis.jpg +++ /dev/null diff --git a/slides-intro-short.tex b/slides-intro-short.tex index 9dcfa70..3e0f8ff 100644 --- a/slides-intro-short.tex +++ b/slides-intro-short.tex @@ -48,10 +48,10 @@ } %% Set the date and insitutional logos. -\date{\footnotesize\vspace{-5mm}\\ - \textcolor{black}{\href{https://www.eso.org/sci/meetings/2022/REPRODUCIBILITY2022.html}{Reproducibility and Open Science in Astronomy}}\\ - \textcolor{black}{May 12th, 2022 (ESO, virtual)} \\ - \tiny\vspace{9mm} +\date{\footnotesize\vspace{-9mm}\\ + \textcolor{black}{Royal Observatory Coffee talk; Edinburgh}\\ + \textcolor{black}{23rd of May 2023} \\ + \tiny\vspace{10mm} Most recent slides available in link below (this PDF is built from \href{http://git.maneage.org/slides-intro.git}{Git commit} \gitcommit):\\ \footnotesize\textcolor{blue}{\url{https://maneage.org/pdf/slides-intro-short.pdf}}\\ \vspace{2mm} @@ -170,32 +170,43 @@ \begin{frame}{Science is a tricky business} - \begin{center} - \includegraphics[width=0.9\linewidth]{img/nature-cartoon.jpg} - \end{center} - - \vspace{-0.3cm}\hfill - {\tiny Image from nature.com - (``\href{https://www.nature.com/articles/d41586-017-07522-z}{Five - ways to fix statistics}'', Nov 2017)}\hspace{7mm} - \vspace{-2mm} \begin{tcolorbox}[boxsep=0pt,left=1mm,right=1mm,top=1mm,bottom=1mm] - \small Data analysis [...] is a \alert{human + \large Data analysis [...] is a \alert{human behavior}. Researchers who hunt hard enough will turn up a result that fits statistical criteria, but their \alert{discovery} will probably be a \alert{false positive}. - \hfill Five ways to fix statistics, Nature, 551, Nov 2017. + \vspace{3mm} + \small + \hfill Five ways to fix statistics (Nature, 551, Nov 2017; DOI:\textcolor{blue}{\href{https://doi.org/10.1038/d41586-017-07522-z}{10.1038/d41586-017-07522-z}}). \end{tcolorbox} \end{frame} + \begin{frame}{``Reproducibility crisis'' in the sciences? (Baker 2016, Nature 533, 452, \textcolor{blue}{\href{https://doi.org/10.1038/533452a}{DOI:10.1038/533452a}})} - \centering - \includegraphics[width=0.85\linewidth]{img/reproducibility-crisis.jpg} + \Large + 1576 researchers participated in a survey by Nature, \alert{$90\%$} believed in a crisis! + + \vspace{7mm} + \begin{center} + \begin{tabular}{ |l|r| } + \hline + Status & $\%$ agreed \\ + \hline + \alert{Yes}, a significant crisis & \textcolor{red}{$52$} \\ + \alert{Yes}, a slight crisis & \textcolor{red}{$38$} \\ + Don't know & $7$ \\ + No, there is no crisis & $3$ \\ + \hline + \end{tabular} + \end{center} + + \vspace{7mm} + Full PDF available at \textcolor{blue}{\url{https://www.nature.com/articles/533452a.pdf}} \end{frame} @@ -463,9 +474,9 @@ \centering \vspace{3mm} - \includegraphics[width=0.8\linewidth]{img/digital-tunnel.jpg}\\ + \includegraphics[width=0.88\linewidth]{img/binary-blue.jpg}\\ \vspace{-0.6mm} - \tiny \href{https://tsongas.com/newsletter_articles/the-new-electronic-version-of-the-advantage/digital-tunnel-wallpaper/}{https://tsongas.com} + \tiny \href{https://commons.wikimedia.org/wiki/File:Binary_blue.jpg}{Wikimedia Commons} \end{columns} \end{frame} @@ -1149,6 +1160,19 @@ + \begin{frame}{Software Heritage IDs (SWHID); persistent identifier for source code (or any text!)} + + \vspace{5mm} + \includegraphics[width=\linewidth]{img/SWHIDs.png} + \vspace{5mm} + + {\hfill\small For more details, see SoftwareHeritage FAQ (at \textcolor{blue}{\url{https://www.softwareheritage.org/faq}}}) + \end{frame} + + + + + \begin{frame}[t]{Executing a Maneaged project (for example \href{https://arxiv.org/abs/2006.03018}{arXiv:2006.03018})} \vspace{1cm} \texttt{\$ git clone https://gitlab.com/makhlaghi/maneage-paper{ }{ }{ }{ }\textcolor{gray}{\# Import the project.}}\\ diff --git a/slides-intro.tex b/slides-intro.tex index d4a90b1..c395cdc 100644 --- a/slides-intro.tex +++ b/slides-intro.tex @@ -46,8 +46,8 @@ %% Set the date and insitutional logos. \date{\footnotesize\vspace{-5mm}\\ - \textcolor{black}{S\'eminaires LERMA}\\ - \textcolor{black}{December 2nd, 2021 (Paris Observatory)} \\ + \textcolor{black}{Royal Observatory Coffee talk; Edinburgh}\\ + \textcolor{black}{23rd of May 2023} \\ \tiny\vspace{9mm} Most recent slides available in link below (this PDF is built from \href{http://git.maneage.org/slides-intro.git}{Git commit} \gitcommit):\\ \footnotesize\textcolor{blue}{\url{https://maneage.org/pdf/slides-intro.pdf}}\\ @@ -89,7 +89,6 @@ \titlepage \end{frame} - \begin{frame}{Let's start with this nice image of the Wirlpool galaxy (M51): \small{\url{https://i.redd.it/jfqgpqg0hfk11.jpg}}} \begin{center} \includegraphics[width=0.8\linewidth]{img/m51-amateur.jpg} @@ -229,13 +228,35 @@ for computational reproducibility] \end{frame} + + + \begin{frame}{``Reproducibility crisis'' in the sciences? (Baker 2016, Nature 533, 452, \textcolor{blue}{\href{https://doi.org/10.1038/533452a}{DOI:10.1038/533452a}})} - \centering - \includegraphics[width=0.85\linewidth]{img/reproducibility-crisis.jpg} + \Large + 1576 researchers participated in a survey by Nature, \alert{$90\%$} believed in a crisis! + + \vspace{7mm} + \begin{center} + \begin{tabular}{ |l|r| } + \hline + Status & $\%$ agreed \\ + \hline + \alert{Yes}, a significant crisis & \textcolor{red}{$52$} \\ + \alert{Yes}, a slight crisis & \textcolor{red}{$38$} \\ + Don't know & $7$ \\ + No, there is no crisis & $3$ \\ + \hline + \end{tabular} + \end{center} + + \vspace{7mm} + Full PDF available at \textcolor{blue}{\url{https://www.nature.com/articles/533452a.pdf}} \end{frame} + + \begin{frame}{Our solution: CiSE 23 (3), pp 82-91: \textcolor{blue}{\href{https://doi.org/10.1109/MCSE.2021.3072860}{DOI:10.1109/MCSE.2021.3072860}}, \textcolor{blue}{\href{https://arxiv.org/abs/2006.03018}{arXiv:2006.03018}}} \begin{columns} \column{0.4\linewidth} @@ -281,13 +302,14 @@ for computational reproducibility] - \begin{frame}{Recognition 2: ``News and Views'' in Nature Astronomy (\textcolor{blue}{\href{https://doi.org/10.1038/s41550-021-01402-3}{DOI:10.1038/s41550-021-01402-3}})} + \begin{frame}{Recognition 2: ``News and Views'' in Nature Astronomy (\textcolor{blue}{\href{https://ui.adsabs.harvard.edu/abs/2021NatAs...5..986K}{2021NatAs...5..986K}})} \begin{center} - \includegraphics[width=0.8\linewidth]{img/nature-astronomy.png} + \includegraphics[width=\linewidth]{img/nature-astronomy.png} \end{center} - \vspace{-2mm} - \footnotesize Free-to-read link: \textcolor{blue}{\url{https://rdcu.be/cmYVx}} + \vspace{1cm} + Free-to-read link: \textcolor{blue}{\url{https://rdcu.be/cmYVx}}\\ + DOI: \textcolor{blue}{\href{https://doi.org/10.1038/s41550-021-01402-3}{10.1038/s41550-021-01402-3}} \end{frame} @@ -344,7 +366,7 @@ for computational reproducibility] \vspace{-5mm} \includegraphics[width=0.7\linewidth]{img/hale-prime-focus-marked.jpg}\\ \vspace{-0.6mm} - \tiny \href{http://slittlefair.staff.shef.ac.uk/teaching/phy217/lectures/telescopes/L07/index.html}{http://slittlefair.staff.shef.ac.uk} + \tiny \href{https://slittlefair.staff.shef.ac.uk/teaching/phy217/lectures/telescopes/l07}{http://slittlefair.staff.shef.ac.uk} \end{center} \column{0.5\linewidth} @@ -372,7 +394,7 @@ for computational reproducibility] \vspace{-5mm} \includegraphics[width=0.7\linewidth]{img/hale-prime-focus.jpg}\\ \vspace{-0.6mm} - \tiny \href{http://slittlefair.staff.shef.ac.uk/teaching/phy217/lectures/telescopes/L07/index.html}{http://slittlefair.staff.shef.ac.uk} + \tiny \href{https://slittlefair.staff.shef.ac.uk/teaching/phy217/lectures/telescopes/l07}{http://slittlefair.staff.shef.ac.uk} \end{center} \column{0.5\linewidth} @@ -390,9 +412,9 @@ for computational reproducibility] \centering \vspace{3mm} - \includegraphics[width=0.8\linewidth]{img/digital-tunnel.jpg}\\ + \includegraphics[width=0.88\linewidth]{img/binary-blue.jpg}\\ \vspace{-0.6mm} - \tiny \href{https://tsongas.com/newsletter_articles/the-new-electronic-version-of-the-advantage/digital-tunnel-wallpaper/}{https://tsongas.com} + \tiny \href{https://commons.wikimedia.org/wiki/File:Binary_blue.jpg}{Wikimedia Commons} \end{columns} \end{frame} @@ -499,23 +521,16 @@ for computational reproducibility] \begin{frame}{Science is a tricky business} - \begin{center} - \includegraphics[width=0.9\linewidth]{img/nature-cartoon.jpg} - \end{center} - - \vspace{-0.3cm}\hfill - {\tiny Image from nature.com - (``\href{https://www.nature.com/articles/d41586-017-07522-z}{Five - ways to fix statistics}'', Nov 2017)}\hspace{7mm} - \vspace{-1mm} \begin{tcolorbox}[boxsep=0pt,left=1mm,right=1mm,top=1mm,bottom=1mm] - \small Data analysis [...] is a \alert{human + \large Data analysis [...] is a \alert{human behavior}. Researchers who hunt hard enough will turn up a result that fits statistical criteria, but their \alert{discovery} will probably be a \alert{false positive}. - \hfill Five ways to fix statistics, Nature, 551, Nov 2017. + \vspace{3mm} + \small + \hfill Five ways to fix statistics (Nature, 551, Nov 2017; DOI:\textcolor{blue}{\href{https://doi.org/10.1038/d41586-017-07522-z}{10.1038/d41586-017-07522-z}}). \end{tcolorbox} \end{frame} @@ -1332,6 +1347,19 @@ for computational reproducibility] + \begin{frame}{Software Heritage IDs (SWHID); persistent identifier for source code (or any text!)} + + \vspace{5mm} + \includegraphics[width=\linewidth]{img/SWHIDs.png} + \vspace{5mm} + + {\hfill\small For more details, see SoftwareHeritage FAQ (at \textcolor{blue}{\url{https://www.softwareheritage.org/faq}}}) + \end{frame} + + + + + \begin{frame}{Project source and its execution} \begin{tcolorbox} Programs \textcolor{gray}{[here: Scientific projects]} must be |
