The Make demo is now broken into multiple slides

Until now, there was only one slide, with many boxes and arrows
connecting them. It was too complicated to understand for the viewers.

With this commit, it is broken up into separate slides, with each
box/arrow added on each slide as we progress. This helps clearly show
the logic behind all the connections.

The LaTeX source of this graph is in the paper that describes the
project, I will later bring that source into the slides too (and
remove all the extra figures).

18 files changed, 70 insertions, 11 deletions

diff --git a/img/make-demo-1-raw.pdf b/img/make-demo-1-raw.pdf
new file mode 100644
index 0000000..ec9530b
--- /dev/null
+++ b/img/make-demo-1-raw.pdf
diff --git a/img/make-demo-10-texsources.pdf b/img/make-demo-10-texsources.pdf
new file mode 100644
index 0000000..9a57969
--- /dev/null
+++ b/img/make-demo-10-texsources.pdf
diff --git a/img/make-demo-11-downloadtex.pdf b/img/make-demo-11-downloadtex.pdf
new file mode 100644
index 0000000..4277da7
--- /dev/null
+++ b/img/make-demo-11-downloadtex.pdf
diff --git a/img/make-demo-12-analysis1tex.pdf b/img/make-demo-12-analysis1tex.pdf
new file mode 100644
index 0000000..46c75cb
--- /dev/null
+++ b/img/make-demo-12-analysis1tex.pdf
diff --git a/img/make-demo-13-analysis2tex.pdf b/img/make-demo-13-analysis2tex.pdf
new file mode 100644
index 0000000..38188d8
--- /dev/null
+++ b/img/make-demo-13-analysis2tex.pdf
diff --git a/img/make-demo-14-analysis3tex.pdf b/img/make-demo-14-analysis3tex.pdf
new file mode 100644
index 0000000..a71a3ca
--- /dev/null
+++ b/img/make-demo-14-analysis3tex.pdf
diff --git a/img/make-demo-15-initializetex.pdf b/img/make-demo-15-initializetex.pdf
new file mode 100644
index 0000000..bc2570a
--- /dev/null
+++ b/img/make-demo-15-initializetex.pdf
diff --git a/img/make-demo-16-projectex.pdf b/img/make-demo-16-projectex.pdf
new file mode 100644
index 0000000..0d46859
--- /dev/null
+++ b/img/make-demo-16-projectex.pdf
diff --git a/img/make-demo-17-paper.pdf b/img/make-demo-17-paper.pdf
new file mode 100644
index 0000000..888b299
--- /dev/null
+++ b/img/make-demo-17-paper.pdf
diff --git a/img/make-demo-2-input1.pdf b/img/make-demo-2-input1.pdf
new file mode 100644
index 0000000..9b342fd
--- /dev/null
+++ b/img/make-demo-2-input1.pdf
diff --git a/img/make-demo-3-out1a.pdf b/img/make-demo-3-out1a.pdf
new file mode 100644
index 0000000..92189ad
--- /dev/null
+++ b/img/make-demo-3-out1a.pdf
diff --git a/img/make-demo-4-out3a.pdf b/img/make-demo-4-out3a.pdf
new file mode 100644
index 0000000..0f25649
--- /dev/null
+++ b/img/make-demo-4-out3a.pdf
diff --git a/img/make-demo-5-out2a.pdf b/img/make-demo-5-out2a.pdf
new file mode 100644
index 0000000..52f0599
--- /dev/null
+++ b/img/make-demo-5-out2a.pdf
diff --git a/img/make-demo-6-out3b.pdf b/img/make-demo-6-out3b.pdf
new file mode 100644
index 0000000..c429d6b
--- /dev/null
+++ b/img/make-demo-6-out3b.pdf
diff --git a/img/make-demo-7-input2.pdf b/img/make-demo-7-input2.pdf
new file mode 100644
index 0000000..aff99d9
--- /dev/null
+++ b/img/make-demo-7-input2.pdf
diff --git a/img/make-demo-8-out1b.pdf b/img/make-demo-8-out1b.pdf
new file mode 100644
index 0000000..fe6f123
--- /dev/null
+++ b/img/make-demo-8-out1b.pdf
diff --git a/img/make-demo-9-out2b.pdf b/img/make-demo-9-out2b.pdf
new file mode 100644
index 0000000..b25a4ea
--- /dev/null
+++ b/img/make-demo-9-out2b.pdf
diff --git a/reproducible-paper.tex b/reproducible-paper.tex
index 9543f6e..8cebe7b 100644
--- a/reproducible-paper.tex
+++ b/reproducible-paper.tex
@@ -101,7 +101,15 @@
     top color=white,
     bottom color=green!50!black!20 } }
 
-
+%% For the make demo
+\newcommand{\makedemoslide}[2] {
+  \begin{frame}{#2}
+    \begin{center}\includegraphics[width=0.8\linewidth]{#1}\end{center}
+    \footnotesize \textcolor{green!50!black}{Green boxes} are \emph{source}
+    files (hand-written), \textcolor{blue}{Blue boxes} are \emph{built}
+    files (automatically generated).
+  \end{frame}
+  }
 
 
 
@@ -883,10 +891,41 @@
 
 
 
-  \begin{frame}{With Make, we can record the full data lineage}
-  \centering
-    \includegraphics[width=0.8\linewidth]{img/analysis-diagram.pdf}
-  \end{frame}
+  %% Make demo.
+  \makedemoslide{img/make-demo-1-raw.pdf}
+                {Source files (containing instructions and configuration parameters).}
+  \makedemoslide{img/make-demo-2-input1.pdf}
+                {First built/output file (downloaded dataset).}
+  \makedemoslide{img/make-demo-3-out1a.pdf}
+                {Downloaded file is used to build analysis-1's first output.}
+  \makedemoslide{img/make-demo-4-out3a.pdf}
+                {Second built file is for analysis-3, also depends on
+                  a value in a configuration file.}
+  \makedemoslide{img/make-demo-5-out2a.pdf}
+                {First input is also used to build another file (using
+                  two configuration parameters).}
+  \makedemoslide{img/make-demo-6-out3b.pdf}
+                {\texttt{out-bb.dat} is built after \texttt{out-2a.dat}.}
+  \makedemoslide{img/make-demo-7-input2.pdf}
+                {We now need a second input file, which is downloaded.}
+  \makedemoslide{img/make-demo-8-out1b.pdf}
+                {\texttt{out-1b.dat} depends on \texttt{out-1a.dat},
+                  \texttt{input2.dat} and \texttt{param-1.conf}.}
+  \makedemoslide{img/make-demo-9-out2b.pdf}
+                {SUMMARY: The exact lineage of data is thus recorded in Makefiles.}
+
+
+
+
+
+
+
+
+
+
+
+
+
 
 
 
@@ -959,12 +998,32 @@
     \end{center}
   \end{frame}
 
-  \begin{frame}{We have the full data lineage (raw input $\rightarrow$ every number and plot in paper's PDF)}
-  \centering
-    \includegraphics[width=0.8\linewidth]{img/analysis-diagram.pdf}
-  \end{frame}
-
-
+  \makedemoslide{img/make-demo-9-out2b.pdf}
+                {Recall that the data lineage was already recorded in Makefiles.}
+  \makedemoslide{img/make-demo-10-texsources.pdf}
+                {Makefiles are also used to connect the analysis with with paper.}
+  \makedemoslide{img/make-demo-11-downloadtex.pdf}
+                {Information from the raw inputs is stored in \texttt{download.tex}.}
+  \makedemoslide{img/make-demo-12-analysis1tex.pdf}
+                {Values to report from the first analysis step are kept in
+                  \texttt{analysis1.tex}.}
+  \makedemoslide{img/make-demo-13-analysis2tex.pdf}
+                {Values to report from the second analysis step are kept in
+                  \texttt{analysis2.tex}.}
+  \makedemoslide{img/make-demo-14-analysis3tex.pdf}
+                {Values to report from the third analysis step are kept in
+                  \texttt{analysis3.tex}.}
+  \makedemoslide{img/make-demo-15-initializetex.pdf}
+                {General project information are stored in \texttt{initialize.tex}.}
+  \makedemoslide{img/make-demo-16-projectex.pdf}
+                {All the \TeX{} macros are loaded into the single
+                  \texttt{project.tex} (after the analysis is complete).}
+  \makedemoslide{img/make-demo-17-paper.pdf}
+                {With the paper's \LaTeX{} source, \texttt{project.tex} is
+                 used to build the final PDF paper.}
+  \makedemoslide{img/make-demo-17-paper.pdf}
+                {Full data lineage (raw input $\leftrightarrow$ every
+                  number/paragraph and plot in paper's PDF) is recorded.}