9 files changed, 217 insertions, 181 deletions
diff --git a/reproduce/software/config/checksums.conf b/reproduce/software/config/checksums.conf
index 1a81ef1..01ef8c8 100644
--- a/reproduce/software/config/checksums.conf
+++ b/reproduce/software/config/checksums.conf
@@ -15,53 +15,53 @@
 
 # Basic/low-level programs and libraires (installed in any case)
 # --------------------------------------------------------------
-bash-checksum = 2ce67af3ff6b6c9d87b2e98986da937ee100a4cecefd50f01ccdbaeb53e45ff80b1e84d5861619dd3058259223a1f0748e5850aa2dab13b3350fb8a955c3024e
-binutils-checksum = 028c64a9ac34def97ddb4ead355776999c4e3376857e865c536ed74593292437f5bd2049c036a506129f596ba78898b0cefec5c677b6cd76e7d18dfac9c64a33
+bash-checksum = 52fa7d14e5f05d7b1b5f64ca110388db119fd6b8d4cc25011e0e25848491507e610259091c56f3ca7a7688ee2547f8a98de2005626b35c29558e71f28e29b848
+binutils-checksum = efbc5957bd22804a860261886598778347e82f9cbc0728d21d26748b7296e34328fdc16252868169594a001a301babbcd0964d9c508523736bc79cac2aff8efc
 bzip2-checksum = 929cb1b2d0db8a505e2bafe3ce2c893c8f132dd617c0110e86e19f116b570a85de3c8a635483b530456fc8f8b6698c8190d21313e47607f442807b10489ac86e
-cert-checksum = 25b689ebac01ebde136bcef1ef4aa18389fcc618375755001f153b37060cfb327fd6d6afac25d4ddfcf78fd6678fa00ce49ba688e725e4a4c657c37cba4ec3ca
-coreutils-checksum = 887ca0ea9e6918c9e959033e625537335902a118af8384a050bbdfadf1c7fa30a92521dd4d9714055d869c1619c20f0f6bcecb89a99f22278a74668b393a5cf0
-curl-checksum = 9158e35f1f8bee8236df933b0011bc1865bcf10182725b9578824abbfa9cc4dc1e468ab97a5c30bb791cba23e224e395189a6a70b314a500dac1222e4bf21908
-dash-checksum = 794290f8270f05a134966088af5a7f5abd5c7a06e7057108aa49ad18af43643a038cd926192b81cfc9169d9d419b03c9e815483936bbaf102fe7a462f84f358d
-diffutils-checksum = 597cd0a14087722b78469e2238fcee25e78108f53ca43fbff1194d87625b4c7498a205f68c7bb44fcd437b8d642bba263ac40170780aede006076b11956fd06e
-file-checksum = 22acda3d760fa19f94c67086ae5ea8243afbc896be10d3905b92610fe58cdc5954ce4f6756a2cc2a2c241572c37a56b4d6813b14a37f51d718314c6dc9b201fb
-findutils-checksum = 8f1887781e3f97aec1144dbda6da9590489ffb7dd28e47a5c574c0382398988f015a6f4364b90a66a9e35b3c0e79d8a71c573402b3f95f7f9482f2d47687a4a9
+certpem-checksum = d1198511bf1f61a624691c182ecdd57ff468030a4af8b0f0ef248a5ce1f42ed883c684fc5aafdd791d5d3aa24504fbfbab11043231594b1c4e21fdb7247e5a33
+coreutils-checksum = 2afaee98b305f000ab1c9e25b5fec6413c3e385c685f2afe94e3676593c09efca39d007cfda2b3b122e68e94204d2ebe7f50b39300899d8720518d6f74bce019
+curl-checksum = f391f696d725ace63271fe614ab3067b8d55d04be3a160c70bbca388de93670e5fb986dd5dd45e1b62c0327b2b1374ab229bdb5c9df746f70823e0721c9f048d
+dash-checksum = f21a2ac71606a5ae8dbda5639d111f385cc44c357c580a83e453b33faa32c92fd83f8ca6c5d2cf720343f8ab1cfec247ca499596f78ee19f62d67cd1d7ae0c69
+diffutils-checksum = 52582c860a4ce544f0c1a3e61bd9a1ce5f13e1c677b67d3713982439760e40b60267b222de3ef0a27065652822d9880a206899528d7ff8d60c7e64b64721b3e1
+file-checksum = b843b3c25656e8dec52e64eed6f581b29faf36540e0604a803d61c0f0eca830a01a947b81970b0d8a24a1336a37ae5c96bb2ade59daa16c544b1e82fc7db24e8
+findutils-checksum = 826c643e7f5c5d6976a47eabcd9807e51350d09ee8fc7dc931f2d9276f938f65aa0bd97e6213aa979742234784c120e1a6850a52207c327e1c1a465feb374053
 flock-checksum = f711815035e21b46572bf80e730a55822e5abf4cb29749e476ee6cf4d5027e9a7deeacf5f6b8c37f18f17a0cc7a6d98fb0be3936e97b122707f1cb2306d1e1d9
-gawk-checksum = 60a9fb36e57c0819576f5b2e48b0cf82210dd0cc45f65529c15d53ae66f8d0674929434bd7ed6fa4beaafc81c6b0ccd8c56d21b5326f7b03dcf958cafca03c3a
-gcc-checksum = be8a7e21fb7ee3be80b814708d6ffb63093fa103a51eb736b3717ac506ed4afcc7571bfe0d475f072e82bed439225d20c07e5d1bbf449a9bc4e10b82e4d8dead
-gettext-checksum = f3083af79341bfdc849118333c1598812c12bc225d998181694648187088050160deb4777c252f72a7158e914c2967416489bc6167ef8505664497f2fb94ecbf
-git-checksum = 2ade8fe6e9bbc88ebfe72348b13e7c68acbd066dfd6bcdd0de4949ec22aa25d02246efb25e7a7868eef1739c8e8cc7bb73c4caffe0060046bbf738f601eac2a7
-gmp-checksum = 2bec8840bceaeac542ce1f7870d5b971b631b055b49751ba4f78f98229d7eb9cd97c0a668f6d7cf81a53bf0b3d5d70e682af523f8f0eee0d7390727ff2bbb271
-grep-checksum = e8c28da23fcef11825c54794b3eebffd0eaf84b7ebf5e187fd06b5d4aeff2af1ac097f0166151b3f11f332dc72abf6097188d578f549496f4c7c96ccf479a61e
-gzip-checksum = 43bfed5da4f376f9ee295fb505648e364bd85d38c22f0de79024e5fd2b7e341f7fef8fed0d49a0f0484164fb5c6ce02b1b1951891807bc2b50e1a3e8f7990548
-isl-checksum = e257c19d861da6615c0be303bd8800d5e1a1c71595126da573c7a8d91fea6c41b9cacc2378caf5272949c6719c8835584a6c7fd05246bf4ffe56031543f648e3
-less-checksum = 31f733ecf4170b4f5dcf467b902d0753833f852739b03bf611137aea3672c03e00e9418fd5e289e82624c2dd42b0de06cb65a7a637dae78e7647e5c6ecf9fb57
-libiconv-checksum = 01e1b073ae6a82320d8759c973ca27c217377f2afd7a27f52f944d1d6e9079e407a7a4d2352f6b38541e49a85cb27dd39ce2f5f74f44ff42775901cda72e1159
-libtool-checksum = e0bdf6194e77beff0273a487b6345a0707addf1c7f57c35663550c5ef6f41dfcadaaac9df30ada639f5c066fa17a4ce7155bbfc0c920e1a1eadd55dae8183754
-libunistring-checksum = f1e92717fc043c2d7c454e44700559b0bd75457fdf3da5e803d9d58d8ebdff261bc73f380f6350bb04ce04071687c0317d09b4e8615003187948be1cd4d0bab3
-libxml2-checksum = 0fdc16aa7536adfe1deaadd19cdc20101dd3b081bd0a2e59d8ecc2965b2ef4c30d2e2447ab5b0cdb861c57ddb89ace1bd4ce120d9436b751b37724a90981ba8c
-lzip-checksum = 9b18ab9b7ef9a7d1c2da06b48fd018399e94405a5ada457885b778c59caa3faed0e73e1da398516621dc9e721587785b57ef1f8a12c1b0e116ebce5129f0f24d
+gawk-checksum = 13cb59a4ef43e5b0d10f13263dcf5ccd72d9344f3ecc512589ed7f6d059baf8a5ae375d38f7654695e29f0694fc33deba3c7c008d61f09e67df57bf81e573f0c
+gcc-checksum = 40f239730fc0165a0ef48f252a886e9cbe7a95ed53fe2c7a16531d7f3d6faabecb2d868cc895a25f7561e7bb90892e3372652953efd8ac35359a6ac2e18a4447
+gettext-checksum = c53f3a09cbb62a3ba8870f1310da336c084bfc83534d7e9c236f7660f503d638654a91301558f1e4880ead2d629dcd92f7c3dd7e0d981d445b74215d836d19ea
+git-checksum = 6e7ac2188cf3204fceeebffc46f34a8180e53a887987a8e1b9d6c90f84073e4b86d45f39488f69432b1cd0962cd8fbd434c07128fc2e430cd2ec20f1a1fc8b61
+gmp-checksum = ad65de00ecb46cf454ed6c40d2a57ce2528f5fa64df1284dfa15036f1e8cf27760a09a4ecdfcc39048faffb71339bba30d99dd365c54173dbc2ba629bee2fad9
+grep-checksum = b1ad850671290120ca0ced6d1744622d99a903c6e638dd231e89a70a2ab48c382100e218697b6fbbbda8c99316679a7c681383a5e954790bbffb9719bd0d6d8e
+gzip-checksum = 19ef6f51ee8274c08aa188ebd26634a40f91c057ff1ad3253719a7fa0c7ac857de5cf289990e0b9fc67d89ca3abb50db6dbaa7664d2c58275c844712834d5e10
+isl-checksum = 615827a86e809c9645e090786008f8b37d7efc7fee6501ff81e937a299a5a72e7998a3965457d1380cb04f7e765b600276d87b7b59cae22d82aa65e71294f499
+less-checksum = 3b52347e1b779a52c89cb18da85a0963eed500e1e94cd3952c0693c56fd0eec4e8606eb02053d451ac92ec8c6e196edd1341eac54515ed84483112513f41f210
+libiconv-checksum = 1f33fcf7f617990812a26e15092dbb2f9e81400cee117eefd40ade813f7ca17c0b9a50a7a9881b4ab0b9c0be8475528204c347d940cbc667a918570e0bde051a
+libtool-checksum = 2aa6d535b4d644393d7ca5c8f174b09923dbdb50d947ba40917aad75c8cecf957fec7a54717bd3670c44130331b1f08fae3694e32c79c8e187c31e909b3d401b
+libunistring-checksum = 6ca6a2dea2c09b6e8e63eb7ff73ab62b2e2f7c412766209c9f6da5b13a109e3a7cb41e67aaee1fb2b46549965b7df13c508000e40594570abe71819dc9cc2eaf
+libxml2-checksum = 7c2c65ae5017be5d695ec5a0e9bf443fe130d33beec97f31bcdbe74c22ac7745ce02524ca603e701035576bdca91c4cb1cbe67ccad5525f9a4566451a8f0c935
+lzip-checksum = 513b7ecdee1d6f12298cbbb025286c887c5e6588e1268b489735955f822a8e305e7a8d4d06054a77b2f4c40f8d82e9e6d779cd73d4227ca3cdfe4002b9e42a98
 m4-checksum = 7f8845f99e64d6a45859b9d80b03352a5526b3de0311ca4d6dd6850e504d26dfc90cd21d1640b10382f786213f8fdf20183bff424b3c41ea11432315993ab829
-make-checksum = ddf0fdcb9ee1b182ef294c5da70c1275288c99bef60e63a25c0abed2ddd44aba1770be4aab1db8cac81e5f624576f2127c5d825a1824e1c7a49df4f16445526b
-mpc-checksum = 85e044749c2a001a70af2c11fc4bac58709ca7df11bf6da3b03cca852ef336eb37c4fb1dafdffde2d13df35caa7c296a7cba19a4625b82dc3cccc5066ac95774
-mpfr-checksum = 23a30040511809b6a8ed33d5ef83f903e987f0e4b8e87c9bfa627fdf0ca6400330bda4fd727cf1d37f04f7804c77663ed983c6b5ed26f5d5bd772bf13f1f9eb5
-nano-checksum = 0995899c5bae17411461870d5a5fc61da43679938cd2bf909ae96a0e3ecd3f47319f57397983ef53abe076c34147ec77eb87de0167ce17d1933fddd95983e0a9
-ncurses-checksum = 68b7c0388304791ce82ab86ea5c5725357f07bbae0c230af3e4722f75617778b6e28d1f0c1d65871379670e54fcc96ecd54f529a3462d207f3d930e6dad5a2dd
-openssl-checksum = 722588b8d9f8b7a1c607475f441c47a7097b12f1885a471767424c7509103589a9e2647b5da35f5218fac6edee5c7946e4f2eb6962b434b14142330cf7403ef1
+make-checksum = 154a0247297a7b0131ff63fa8636d651b33aacc8f4a0dad1db176995b20c2039f4fd58eeb2ec27cc0ca7a95c1853199a4ee35a14afc5084995ecc1d694203412
+mpc-checksum = 76e0720e6287d8b7a3eaa09dc5baa5a2b61dde88198c9e1bc9c458a268a44035d11fbab1c8019501a7ee2d5745c7eddfb0bb3c7297110a0fd9e027acb42d0fc3
+mpfr-checksum = c6013b0f573271a3bc41bc3eb28c61f099c6fc5409096a27624b5ec049e6305a1c48275c6f244d0cbe1fe65f649704c7d5f6487ad24308f6b3becc17032fc222
+nano-checksum = e559c09057ff75cd650f02744dff801750a159785234189e48f976bb4ab90142aca2577a283f80d8eecdc4f2b6c0a55bfe6da69e6aaecc5812f32f923075ca9c
+ncurses-checksum = c94eccc1b23a9c6ca9b27881674b19802942802cf21084bd80e45e0b9e50a2d99e0e18a1ecd5cf3e686949982ca93132a7fe2f117a7c4307283db5012b11a2d5
+openssl-checksum = c4c44ab8e4a6d39e6aa69b096a831645c33d5675619d31da6e441452f67e487489b33041a34038a0f8ad596506e17ce8695a8f87bae861700481ecf6b9742b76
 patchelf-checksum = f74409c00e7e50a88590267fa0c173f71239f1471985792f7bcdab750d202a9a25383c015987608bbcd6ace5b3642645d46dba63199ba54fabbcb51ae7fca8f6
-perl-checksum = 0cb49a0891ed0b8963093556af232b424d97eea5af659b00a6781c1de446da730a318c5d75d1d8cb7d7572cd4adb1423e4b9019bad96aa17da0de28a19f36399
+perl-checksum = d53da403f2232b487f11df4b0b889babf58350715c7430515ba32e2e7d9996308c5d75ee626906a9f3c56872672c9cfe3880e10c7bb084c178c7c76bb2a5346f
 pkgconfig-checksum = c37ab9336ac15a73bf5a23101f3fd8a04810f39b0679634e420e5d7bbd60a80cfc919122694cf83965beb071d2780681efc8d954ce99d77eb235a4dc7497e250
-podlators-checksum = c653205fd1e8e570750584cdb3a813a1250ae6f66d4e654b3521b80052867a3a6ba15ad3d7c8a22065f1febc36175257f9b5685570fcf0a87908c2dc9d42cb3d
-readline-checksum = e7afacba7da0ec0f98c5cfd1a25873a1803c1beee9f8b2bb603844415466e9406512b69e1624412be3a48dc49ed048433599b0f9693986a5253debbc5631e0ae
-sed-checksum = 90d8fa16b2570baee061c128d6db688a3354796a6499014f12dc4c5966b34cbb8a04a47914e4ff8dc1815444ad0235565efef2a327b67c485e3324c2a1d07d78
-tar-checksum = 98d938d76a55dca1d1ba9a13f1aa2a3e8ae25ea422843e93daab98d373f4a72eebf052c88c87122ac16ed629863dc3fdb86dddf18d3ab5a2565b06f49b7d02bd
-texinfo-checksum = 6a706bd0f973b9bbe4fdbc3bfd475cc9699eb410d276cbc19a73255924313006e1b80a87803fa30f7245e3fcb610c829da31e38c91e791e19f11ca8b998914c4
+podlators-checksum = 2e1e8547b0c890101a9fb8d80807b164a0a708820617a6826127930f85115285a0e4d62ddf8ce2401df14c021521a1b3ce0cad0d308e08f7b3d0c49d1b0dd36f
+readline-checksum = ca08305c5a6d5eb6656a7cdff73aab65c1234de62db8da90335e9ea140b1d4f8a867204bdc49ead3acc5e5236358130e73032bd73de5dfe1eee5bb2c76be5cb2
+sed-checksum = e801dacce45a08671e65897f85be0a37a29d97f61e846ca17ff870d3ab9f5a639dba73457491087ff637df4a81099b864d2496d59acf17a07916b43bfe0ae480
+tar-checksum = f8d0b543dc4a2a57d61d8a183d7a64d611d11f033c64683f022a7f1f956d352d364a959903a2549ab1256c1a068de51052960cf34a70f355b80e237f654bfac7
+texinfo-checksum = 06e7d95d73380c16f064e119bd8717942fb464c1cbc532fb1833d2d5dfc3cbbcab2a9001a1d03721c347f676e1db22c2a0f78d19d22df379d0393527be411ef3
 unzip-checksum = 5c1f3c417d5feed64b8c5dbc26b51dd84130b9ea43d77e810cc9e82cee6e965fa76e2636e5ba11a029eae3454a815a6081cc2828079fa3994c511d555b82f12c
 valgrind-checksum = a99e09e6d957ce435e64f4ce7b1a14e7e266282578171ce4e3bb3f405ce304e4df3b43d2fca59a6024c176f60c2ac82b3992afc810386e8de03c72f262b32702
-wget-checksum = cbce817981864d4dc424b330126b0d06231907004f1fcfc8d105ffc043bab59e93421738d36cf95013cc03b5b9f9813b1c242a3ef3926a907889ca78dfb336d4
-which-checksum = f886f5828359584b204f20a3b712d29c14879288e6255ab612784fce167bc9467c246bf48f9c52780069a95fe25761c3edda358428893967f4a1a1e5e874b2d5
-xz-checksum = a92bc2619f668a9e462945423035a090bc91c010d0788db8fb300851a3f93c04af2d433bc545195979d51312f59667c5814e46dd711b67fa8f89c0864873b81c
+wget-checksum = 75ba60150baf673def8ff5f2688af57d89d699f1b5105cb1a6bc0ce88778be191c74757665d773ac84fdab975851ca9015b30f12f31877fd752500efb49e0034
+which-checksum = cbda59450d35c2fa04f9072db43584ff745844cdb129bce1a382eb50bcd19815f0bbf12f2b03f748cb3f585acf0a16eb2e661b71f9066469236d28e9fa40f168
+xz-checksum = d897a55ae5ee7d778c68edff83c53e6624619f233acd529439fade305681d07b7665ba1d370cf84abb38c7f3f8f88c3d127974c4f59667843814211802501080
 zip-checksum = 433eda6a27074746a960952fa3b08028d5ba43fe976a1306dbace9209be5f89aa0554b17bba5815cd00984c0f64559c5fa0b754b620f6d646a2b145a8b599acc
-zlib-checksum = 97493906504451830655b300b4144deeeb9f41bdb9b3f3a3d5635c2b16bf90d543841dc70d028f1cee6b52ad1c604fdc18b18f559d1e4ed6523e6b3ce76fd8c5
+zlib-checksum = 8f0b28c7d0d5d1906c2c03586f4ad3188a7c7eb73d25295a7acaa88cdf87b7c82ac609282b9b12d2b4d5a368169e4bb5f88ba3b840b57e1cf32c78f2ee3ecd86
 
 
 
@@ -79,44 +79,44 @@ apr-checksum = d0ddf8b10dd8d3a831b94e541d387414cc4d507ad48ff752d3274fb808afe6628
 apr-util-checksum = 6589948e3f9daf4ecd700bdbd2053fcb83005cec9d339278dda067996ba696e4a947116f066cee03214458aa15e0cb6f0df0103e7bc6f8f32327722eb7265f35
 astrometrynet-checksum = 33bf92ec1d5aad50525739f5afb3abd2abe27c8b0cce35a6923831b7b7c35930cb6f14425df47c60dc5561cd27b4af55ea6ccdabaa2d444c81a6c86c7ef9629c
 atlas-checksum = 13634a63c686800bef8affcf4e8f5f89d08f485fc557eb1b9ba51a405926014e659e439268f655984bb7f59ffe497d594cd7a607103826f1046325d89796e1b0
-autoconf-checksum = daf3d17178d8c2d0f872a50217ba4d8a1481bad7e70ee5a58c5599717a01209cbd58e6149c72f6c4829b96dcf602bcfb828d47e32a9cfe3e5710c45f4f1736e7
-automake-checksum = 728284b89ab4607b5de5db6b8bf5ad8730cbd8ac094f583b93bb92c59dee35e021e823cddd412b0507b18a12cbbbfbec0fb0447c23d0afd167769641fe0755e5
+autoconf-checksum = 99edec992950b85f7709323247772d1ec0f6ebfd2b066d83af65e856e8ab2facfab257f43d316fc5a8905fec0ce3c24768afd2873a1b85c795c8c120ae5f9277
+automake-checksum = f4b6485c7358554860b370d587bb5cd6c6c1050529eceb2bb0a0aecd408347405b3d1aa2c63e4a0aa38dc394178ea1e05599f1b5b6951c0e3d8f2f85639ffc71
 bison-checksum = 08c3e9bcf9fc01bc8b3a6c5e5f8ecdf628e07d6ce0874341e9df6d7b2925db7720a29b3be9a98d644f05a9e55e1130e5d182cb764e1481891414df93aeb2794f
 boost-checksum = cc7b78311538d6e8a6849d58da3b4d3062dc6b816f91a06b86609e6f1538d87ef9308c27af4db7a644e7c8e2b3de73c9f011a739e75262a0f36affdc313947f3
 cairo-checksum = 5de8528196b450d01da5cd4562dec0dd8c31028b77640b6c611172f7c5ad1dc9a4d30bd4e38259344c3ee42b979e29be702a3190aae5fbf47c82c79ee0c14a8e
 cdsclient-checksum = 24584eedeb84ab4666cbd2ed0b7264c92c63c9cf090595b75b01dd46f848419d6a7e5cff4db3946695f879d0ee2bfbeb527e88c2be85e769b577302d9b2ad2b7
-cfitsio-checksum = 18dcaec9907c0d6d09c28a1238b0ab1425268aa6c83ca163a2ea8df404cc8fcaa5b9a5b17ed585d415d56ee9a2647b0cfcd6e03da91a1a2f75cf0db530287270
-cmake-checksum = 7587ff2bc7f0d75e4a19798081d13f10545fc49fdf06e913fd1606db2056204471f3536c0e2c46924013c4d64ff1f4e0422eff5dd6b911bce65c01e8510d24be
+cfitsio-checksum = fd40e0cec22bf3a35a7c48ad61a6ebad5a54d3230606c7492161c067b7ccd303ed34d149427bf1d3365e7a3082d89b51df46fc8a9c3d3c0b1eef8756374d711e
+cmake-checksum = 3904964eeb256ae4443d000a24ebdbfd76c677aec08d006f8665020f1ebf2008c65b6a1cffd6fb5b8a29cdb52420415ed2e0e2ea258db2e9888dc48068fc3941
 eigen-checksum = 39c1944e0daca50bb01e929edc98e2bfc234accb30ca019dcccfc7b02db5cc81035592be219ae93cc3ec16fe0255e7e4d1f29ca2ad3dfee7e63546c47cb2f807
 emacs-checksum = 91313dced8cd74f9e4a996eef42806aad00fb2576fc77b3694bb7b670624b6a1551ff49c2a3326dbeeba916e5732ca5975b5dc40b3b063f6e73a22839009abe9
-expat-checksum = 526f2ec03978f853ff76a911b5a168f58a7eac83b8405536afe2a6acf4611ebcb96acbc5df809fd18e4edeb7ca5059a3ce56dcbd12cb33eecf742c6361d83d19
+expat-checksum = c006dff4ee90ee3722df94ef227cfaab3ee4ebf7ee8193a65b904798b4d185e89c863c75a1e8eae9c120bfbf79336c1e31a8b6aa3042f4131b9a1eb0e97c6643
 fftw-checksum = 28bd2f620399a415181027d30d7ea193aa487c7a277c9943d0051488908fd87e2731de0dfc3bebd22a6121d1deaa46037be8296a8a9cdb711f9fde4510c3d368
 flex-checksum = a18e0dcdd21bd51779fd70e5efc2d77fa7b2a56d4d0e929d8abb437f86d7fcfa2cd09b8268185698200866dac8bec4444c5a7cff3140c515eaa49fc77c5aea66
-freetype-checksum = b3c7289cda3f89fa6e51143f2d1f1c82fa34808d0caa9262e7be5498c8f0fdb14e88d31ec9928e3add71f03208e40adb2fa94c2a4b4c6b7bfb81daf64b1578cb
+freetype-checksum = fb2d89421633a56d4276b192106d930c9f29cf2b70c52d9e13ba0c6a2679b6f69c20ab9f14480522992c263b493f198f24593bdeddb5806a4d801ab7604a5926
 gdb-checksum = 4afd6660d2bbc4c48ce726062fb42217bdaa5974774407358b2624036a2ace48ed853746e4d6b83b9a409cd8fefc622b0727c79da8826e28e3d1444fa3a9d148
-ghostscript-checksum = b8ca229c118bd29f0fadb87a65975011d793d8245652eb7e2d2cc1c0e90be1d545b0bfc216703766e35aedd096a1c3ddb6ad9ed8d3c71efa0a9f9904a524e903
+ghostscript-checksum = 2d6422d434cbe6612d4e995022322e17d0167d0d92fe1f6fe122da73558a81fa43025458411e38363a0e30a573cbc6cf997ae7aa562501787d0af88bf1b5b387
 ghostscript-fonts-gnu-checksum = d8de17e5d920bd3803ecdc07aca224fa5b9a26db847ddae0ecc79488dc3e867ab3155a8565f20df7855e5228bc7f36a549b082ba0b8b56c9b948d6cfb655fdc0
 ghostscript-fonts-std-checksum = 40e01f88dd113c3120686c11da1c4cf4ee77c8db315b21cc936c3ccfb42cad4949e207298ec6d78d03327ff05122fcd75ac82d5e7cdc9698d4bbf1f72b19756a
-gnuastro-checksum = 3af26ab271d0015642e7290c96899f433c24ae93685fff3dddcef697acf590981da03a7c598b01f31ff042ec99fc4e4759a5622af73bb6ee989c3c2060be7936
+gnuastro-checksum = d27399993ab65d1864c915fe107efb298c758e1f24e3f300830f8f120768dd3a54daea1d2af5537e9dd3b50a13a51edd237f434bfbb442ab992828b2dab1386a
 gperf-checksum = 854cdb24337f14b0d4199cc97c4a1d2ec7f953ad8125a47a932d93f79bdc067e2de231859ac0e842f14b1a8d80c5606fdc2c295a370df5e85ea15023b478805b
-gsl-checksum = f9b92ef783d922f97fa40e934314648c627002e0b5c8067e6ca9b691cfacd6363efe68216db75ae1a093053c7aa6b56fda2769bd2e10b2c3a373339d7a0fc9c5
+gsl-checksum = 9a46b431eed536182f31e1ecad781ade214ac8bd885ac88bbfd02b6e08482c294775a529e561d358c1f0211d8d20db4ec99b448b9006c3bf7599c076d3fbbcc3
 hdf5-checksum = 58d6d9a1c201efa0863d9c31d189b4d40b1a9b1fb1ab9cb3fdeb4463f508c043e467aa4d44484c2af111d4e2fb775223286da69568774e6edef285208290c67b
 healpix-checksum = c11949e92aae9919fd41de91cbab72beffe2519c1203ab153ba217c6b6c81f2c10ceb07b683da0d04fb53ef5c80a9b208bdbb5379f379b7da9d0611d2430cc8e
-help2man-checksum = 94346bed1c6b4f41384a216af55464ee142a47c40fa9d2dcc8bd86a4ecd64afb4ee7c1a06efbc9c6c7f4f275936dc21840ead193a8cc45840808d6d361be5e3d
+help2man-checksum = 83dca38c2020c85a66da882cd994b4e291eb6a0584149b7b3a74fec1444399ec5ecfc6296080fbc34071cd9f8ec5c931e249fde1f755c7f40930cecafb3efab0
 icu-checksum = ab14b52a3fdf2dcde6b5160ab7218eac381b850d3c278324379741c49d71fa6040fbacca94c6937e6c9fc15843761121deff302ca6854da5ca1cd5b26a34e839
 imagemagick-checksum = 2132614540b7422c9772fcebe7e8e358994efcfb53d8e48fa52992313b09b191847e395bad305322c377a4697014353bb8c15adc4edfd712e038504fc7f17c5e
 imfit-checksum = 15edd2349232c1c8e611b31d3a46b0700112d274515f54d0a0085bb4bfa6d3d5f8a15cd926516e043a29ce841accf3534ae58dbfb952d858dc9445199c957096
 lapack-checksum = ff670e194a1d8c998f05e6143e01a09e6b43176c511217ea3c77742afd9f2566251c50fc23aeb916442401f7118c1d1fe21f0172382a7f4f2c516c1d7d873e24
 libbsd-checksum = 5c7d98474000af1271a36ab769e54aba41578e0b0f06e47af2986d6821b6586ac430ec04cc51b7836823834dd9d0aec9f4ab3af088b94f963b89729fa2cc95d8
-libffi-checksum = 6a4d46567512c3ce69a11c8d01fa0397cf653ea6207b5a86192a52367006f0f27fc08b9ae3559ef45da69433c7c39818199b29ac06bc2c7dc0fafefe7ae7b32d
-libgit2-checksum = 7db8792f4280c484e324aa0f862714cd2ff3ea5c93aaf6953b08f9f2d7423e742d78f6fad11b5e5823747c81188e12432f247ee99dfaf331e4ce293713904ab2
-libidn-checksum = 8606bbdacc48b7fd572104896615acf0ca88f7c11a60c9eafc2ddb8477110a1f62c5684dbd5adf45b6417d9fc04a46add26052f63e464a81b3f4192443d13447
-libjpeg-checksum = 420397a802d81aac7c093aa056bd306f4c617a1deaa42b75179b9497da90568d560624e5423675030fcade69fa2cbca5203060e9fe9f0ef67e5025926b2e1dbc
+libffi-checksum = 027416da7066bd36ac0c9ed8228693e5eeeb5e11dc17afcd7ed7faa66a9e57f505e94dffaf18f8978e6b40964938d4289aa3b5fe8778abe8fb97a68138b8b120
+libgit2-checksum = dd8a2acb214a2f6ba05a0a51a05fa7c04e09f482fe166a6d74f072c8335f23a1bbd3358395c3fa6cbb0811369940be26e3463f9c8fe48d70fce062b69ac996b2
+libidn-checksum = 0ffb80ca195ef0b1b4aec7bb45499d64fbf6b45eb0f68c4ea83193148dc3e761a0098d996722c2ac6e54f18d25057fa8c54b55a9d15593924eb733a30cf8137c
+libjpeg-checksum = 312b0abf986dc937d57dad31b49472258cb6175f9dbc8796a67ed0971a4410bba40d87fae136e42677521dc14df376771982f9acdccf5143ac7edc9d2e91a34d
 libmd-checksum = a598b61dcbd7c3daf25a4affccfcdb2f6d58a0d2057b4f24e8fb92cddbeb0d62f1f5e3dd55195dd83be405d187184a331ea080b936b6c336ad4271be03b0beb0
 libnsl-checksum = a3c8f674357674b7ed4b26c05adde607f39be8d6dc9ff715448e1fcc5fc23d11fbb4ce85a6e493b79bdb0bb450dc3ffb1fb480715779f738d7bc016fae91621d
-libpaper-checksum = e1f37dfbbcc467c2269e228fa71893fd6c4738e1fd6cf24ce6e2ded568cfeeed80da097e51e833aa48e4ab9e1be0a5c75f9f4cf8bf2f050214c85013e9c24043
-libpng-checksum = 8bf8aaccf4b9efe15a18f0c7a0a6a942eba7bcdbaf61313f50af7e04a237ccc12f380b53ed88e5efa2d20b13f1a0f9f365b6bd7824d32350b3b3d9c6fa63eef6
-libtiff-checksum = 4e0da3df4b853f2017d99f23c5ed83d9f0d20743ce4caaf2ab915fa2d392858a7a74f91b1fd8a00055d1e82e26a5eb165aec6411709ea66478dce16062ccb93e
+libpaper-checksum = 8532e5e95b53e0dcb2b2c4c161d3840a34087b5870d449950a853dc312a4016fb1443851385ddfaf4196ad3b2d431e0d861efe82e1a0442392c435c4455acd76
+libpng-checksum = c4eff9a427302c6f228b93a5a6b74d1e667439ce77f20c086d91ec6efa932a0e7f5752b976f4af5cd07574c5e4999c86e2b9cae3e82cc448ee61f3d0dde9253d
+libtiff-checksum = 72ce12ce317ab2a5c188d3aeb575004eacf890dcb2729e9cb46f73c15cde2132624b4e229539af01626e59ea6a4a7380b4b5f90d5fecad787197b8b901615d20
 libtirpc-checksum = bcb6b5c062c1301aa1246ec93ae0a5c1d221b8421126d020863517cb814b43ed038fb6c0c2faf4e68ff133b69abefe4f4d42bfc870671da6c27ca941a30b155a
 metastore-checksum = ac1230686535a652e95024abaf6c5585bdab36f4e092bee5fa4deff2a913cd60f3a6bd8020c6887ccab97f0da3a284a0d4619fad5464a269e7b2040d6f7e6aaf
 missfits-checksum = 32727f5eb30573a1cedacb8900e2536867e4815059eee32e64e3db65be9291b8a91b9f45b2c9f3cf6fc2a8cc448012ea3d502bdd9dee516008e17d5086aee795
@@ -128,7 +128,7 @@ patch-checksum = 75d4e1544484da12185418cd4a1571994398140a91ac606fa08dd067004187d
 pcre-checksum = abac4c4f9df9e61d7d7761a9c50843882611752e1df0842a54318f358c28f5953025eba2d78997d21ee690756b56cc9f1c04a5ed591dd60654cc78ba16d9ecfb
 pixman-checksum = 333732b99994f7ea636d647e0b6123075351b27601b5b6370c9bc821a1ab3921386ddb92b51e015f3fc35104ba09be1e0d7bef47f0b4f73036b01d1d70396dd9
 plplot-checksum = 2c5a36d84ebd948402c924d304427b5702bc75bdd22753c9b3b910b382dfdcc26910382aae452f02d86b25c1c813bbe1f40c9305de1d2809d575975f610fdf10
-python-checksum = b3d6b4187b31167b382e195037d7ca01d5e9c112fceb0f12a30c101dbcc91079601c01aa449f9d33d2fc53c795c33305e80c891e986a0e24cbecc14beaf90199
+python-checksum = de940d7eceee69b8a04f12c613753f61db53ddac1c5cde5388dd342e88a09bae8da1f56b71b96f20997f6203d169e92e9e2558c43b38dbc323221d7bb362abfc
 r-cran-checksum = 54cc07956a70c09b5a533188eb063d2a9dc67a8aa5648ec7f9c107f626220c9f6e17ab7175e65dd54a8d608a1ca4106c8ad2856709eb995ab66439b5f033e725
 rpcsvc-proto-checksum = c3011d7d7ef97a4a751f6921df1a23e1dd8ac50fb0690c759d37010ed7be27968a2130e3b8872cb48d5914216f9d539096a424f1ec38a75f7ed899748151c6f4
 scamp-checksum = c7a192f357c6808acd16d1c5d2657c5c8c2f61e4fecb8a4b18d39b07f4c444f85d5029c21571d41ec3ba9c8d075de8bd660b0e029bf5dd63e3819e963430a938
@@ -137,27 +137,27 @@ sextractor-checksum = 4035710f9b8a20a0bb1a3913dab2dadd8444c179bf6dee425e0e8bb66a
 swarp-checksum = 810af6ea0a2dfc7b78b0f6aaa486b80c29f517b90c29f5037d05f31f761e96a55c8b5dcc259e1b435b25f45f01dac45ddba61da84000a69676cce119880bb05d
 swig-checksum = ecb1d940f584c23df036a8f77288916003f861851dfdf836ddc5bc45b95312f9259150084191c1d9f086c006e64e12a4db22f7ea382fbb71667b811b8f99995d
 tides-checksum = c3360ff0d023b43749ba09a33302ca059f017a157b3ce7cdcf4f1a1578e90d3e7fa420077043adbee6b1ebf94bd698c8d6b279012f36d2a05b4de5351e30e108
-util-linux-checksum = 5f2534266a71cf61373d5b79f5a130191a06e5a3cc025982747be0d336b7ff60bded56cb1e0b42705f01dbd3ff8634928760554c53fef10045e68775c945854f
+util-linux-checksum = 9d421976a344f982f2bd910f0c888a7df4370a1e367c7d2582d03a58cb8500f1fe65cf6a7164c492a9ebd76bff04560c344b3a0f63ecdb372bfea2379b383030
 vim-checksum = 85d083fcf3638f2c3a049b88da46d569d6a250ae132f3821d440c07c4792befffc09e4235241ca96d7b0307a1bb96cd2222ac8a63fb41c6add8c2bdc6c17aabb
-wcslib-checksum = f2ee5b0b6aa8e6ef2923a85d0213e7d66c54b6cdee5c6843abc97436b699215479815db2766ae76af1f1bd6eef4f46cd8510dd87bae8272a4a7c770c32ab7535
+wcslib-checksum = cc72804611df1b0087faed2ec19edbc17352cc631559edc8ceb03792162837cdaa6bbf144897c69a58c9fab7e569a1958149be7eaea6552d72190406e4755d12
 xlsxio-checksum = 22870fda7bd4eefd5fea2a9ad7530c9049135129d9b69805091777e6b54b2fc6c3f0e69c6954f36bce54eebbfeccaf637cce9e271a593221a4296d6632470a6c
 yaml-checksum = dadd7d8e0d88b5ebab005e5d521d56d541580198aa497370966b98c904586e642a1cd4f3881094eb57624f218d50db77417bbfd0ffdce50340f011e35e8c4c02
 
 # Xorg related packages
-fontconfig-checksum = 4786b8419bdead24fe16cdb152b898d2676a59c534fd301f02e5343fd4fe54780fea06521e7c0bf45b794dbb08b0f17359eb5c6f1fe4e31d71dfd952c8fa3da2
-libice-checksum = 9e3488abaff115ac919e5df85479044579802b38a10597425e13466c22c149ef56a8adba77e2adbbcccb8d2e72e23976313f4af3dcee66128b768c971c513932
-libpthread-stubs-checksum = a99695c007e17d81879d5c113652c5e1edab2d63aac9b2984c4f334d85e2cebc1d0b4e8134d6196ed8eea4d4da41972fca27bb8a0c76c2946460f785233a2c03
-libsm-checksum = b9eec391f0438e85e32cf771afbb35bf215119ec31d9e31be40c1b653f2c3e894c2d19add0d6ff69e944d1230f681275e8abad86a8912ec37c1c41e0f1ce4d00
+fontconfig-checksum = e71c684ffcc75015b1aa13918d6598a213b926630317e4babf876fc503e0444ed3211277080a08505cc26da033ee8e673bf5e246cb9d75d2fbe18a43160a0dad
+libice-checksum = c38b5f14d8ac92c5c2507f4369a70c5e2738ee547765ea7a160fc6a0ebc217deb042bad65e16b76a1874ebd131eacc5f53e9630bded5ae1805a7c4c61ff5f357
+libpthread-stubs-checksum = 7895a95e4674fb0c4f206abf744818f58272597f0dd84480a1a217cb4358ff413d153f5e13f748867904e104cf26c43ff8d59a33e0f0a7cfaa81ee21d5d847fd
+libsm-checksum = 7b03a81ae81704ed97426e596849ec1209771f6ca4db296aedd7a698750b586cd56d149690922686c52c64c1c582672474fce00816dddca2c90ad9bded51a269
 libx11-checksum = c5ee35af06a90bfa0e9c5f42feea9887c5beb88960a7658f8465524a360e400a5640e5dcda741549d7ecf470e7142d3728a32659e12f95a316203655a408db42
-libxau-checksum = bdca8935aa1a52bcd2748004d26c7405725c18021a4d9a67604c98c1ec3957cc85b5d987d2fcd9fa4ae5e59b6bbd6ab75712beee2d448bd733a7e3ffeb18e62f
-libxcb-checksum = 85effa5ac6c158df2affbe1a9085ebd2c52ddceaa8d972035afaea2a1f1d3031357bac2586237438cfc20a51468e620b0ff8775d057446ce2ef0768d947e9f25
-libxdmcp-checksum = cb1d4650f97d66e73acd2465ec7d757b9b797cce2f85e301860a44997a461837eea845ec9bd5b639ec5ca34c804f8bdd870697a5ce3f4e270b687c9ef74f25ec
-libxext-checksum = 58f4e87f200bfde2b9a2cd85c1c39d5462b702e12274ffa5fae5bd3a08b3dfab1290b399c31224c86627d927106e4dbfcdec6152c11b169834442008228796d4
-libxt-checksum = 9ec0f95ae073360ea7a80ffca2dcd998c991363b79696550c4f88edf2c9cbf740caca23929660b77fffca4ca292465a101398e9e891cd00db85f8eceaa78cde0
-util-macros-checksum = b29c388c60b8318a478656f0552210b2194ee302c082f694e5426ac5c3f4b97fc3e377cd6a7b2b97c3da3442cfb4a5e42dbae18e151ae39f5f84554016a01155
-xcb-proto-checksum = b1e2c12c9d66e729815e782af47cfd50ede4c771fe0d0607a423a3bcddfb5f2fdf5c8b58b17cfccf508104cf5ad6cc05be8bad5f96807538322050ecd65fa320
-xorgproto-checksum = 32852ca4d682207dd1399274714f26da6a995c3f4a20c3ef197e8dfd637f6782d4ce02cb8721ca0179e4618a585beacc53e74537869434dc3096d4ad47e10c26
-xtrans-checksum = 1c2fdd7cb906f012f7db5d42466734f89608bf3376b6bf4b115c2efbf71c4247587cc218ccfcfaa6d50f0cf336865d10fc604515b25bc6e95917db8acb7e3000
+libxau-checksum = db9c8ce453a650a493f83e30d4fa3b50aabaf01e98b5e24f666c32238f46a8c2c120cd18ac8fda447c3c7f9bf300f9e3a08a1cd2bd1c4ef4ace72a54cfb8243c
+libxcb-checksum = e360337777e578c76251b793dc4e7e9203271f4dd0e1032abbc092f96fa228717fbb702965dff061264cca52f2540c983f4085fa486ced0145ebcc4b9e5b766a
+libxdmcp-checksum = 3c25a8d37f2ea553ebadfd9d886592f9c181e7da0a73b5e7bc853f15f0cddbae39483e55dc417c47ed55b45b8401e633efcb02d692af715b1ec1549b75a67378
+libxext-checksum = 99b2dc7b1e65e78b3335138176a1031a8259820b60abe0ebc87b0c8cc1d3bc9f65aca8b43942811ff78b4e85640e0d4cd63b092423b1351daf32bc4109debf88
+libxt-checksum = 776457c702a8685cdda0c2c0b1d1c441f8e20513b89f83b031c3037ae132b56dec53027465c15b2c2d7d5dd0e6933840b5325de8a7242ef0daa76ae5f28016a5
+util-macros-checksum = a9facbdcf973bfb202832b57207731152e7d58ca4ba034b4de31b931256af55daa651d0463309bed5ad84ed892b19b319c919aab77c849e08deac083d1445529
+xcb-proto-checksum = ea92650cacf0a864381fa29ec5e0c9562435cdbd8604ada5639a79e6aa359b3ef0d7ad0a10c5b1599fa1ddd49d86fade4048526445a9525c2978fa984a34f7fb
+xorgproto-checksum = 1b52be01bea4c22c0bd92ea073d1a11e08e9233e93e28d578a7cb247385f3a270b4fb4ce463cb853f3e1a9c6acb45da456e5f6caf4cfa7676a9e316e98bd22cc
+xtrans-checksum = 84f1142994f93882c9c68a4a85a218290c1c979162dbd4c5ee6b6becf0f96b69685d292cae1793ce65db8d7f1fe3f8955499f4b2ced771081894921512e2e16a
 
 # Python packages
 # ---------------
diff --git a/reproduce/software/config/urls.conf b/reproduce/software/config/urls.conf
index a5998d5..b742fb1 100644
--- a/reproduce/software/config/urls.conf
+++ b/reproduce/software/config/urls.conf
@@ -20,7 +20,7 @@
 #bash-url = http://akhlaghi.org/src
 #binutils-url = http://ftp.gnu.org/gnu/binutils
 #bzip2-url = https://sourceware.org/pub/bzip2
-#cert-url = http://akhlaghi.org/maneage-software
+#certpem-url = http://akhlaghi.org/maneage-software
 #coreutils-url = http://ftp.gnu.org/gnu/coreutils
 #curl-url = https://curl.haxx.se/download
 #dash-url = http://gondor.apana.org.au/~herbert/dash/files
@@ -62,7 +62,7 @@
 #which-url = http://ftp.gnu.org/gnu/which
 #xz-url = http://tukaani.org/xz
 #zip-url = $(shell echo ftp://ftp.info-zip.org/pub/infozip/src/zip$$(echo $(zip-version) | sed -e's/\.//').tgz)
-#zlib-url = http://www.zlib.net
+#zlib-url = https://zlib.net/current/zlib.tar.gz # The version is in the tar
 
 
 
@@ -111,13 +111,13 @@
 #imfit-url = http://www.mpe.mpg.de/~erwin/resources/imfit
 #lapack-url = http://www.netlib.org/lapack
 #libbsd-url = http://libbsd.freedesktop.org/releases
-#libffi-url = https://sourceware.org/libffi/
+#libffi-url = https://github.com/libffi/libffi
 #libgit2-url = http://akhlaghi.org/src
 #libidn-url = https://ftp.gnu.org/gnu/libidn
 #libjpeg-url = http://ijg.org/files
 #libmd-url = https://archive.hadrons.org/software/libmd/
 #libnsl-url = http://akhlaghi.org/maneage-software
-#libpaper-url=http://ftp.debian.org/debian/pool/main/libp/libpaper/
+#libpaper-url = http://ftp.debian.org/debian/pool/main/libp/libpaper/
 #libpng-url = https://download.sourceforge.net/libpng
 #libtiff-url = https://download.osgeo.org/libtiff
 #libtirpc-url = https://downloads.sourceforge.net/libtirpc
@@ -139,7 +139,7 @@
 #swarp-url = https://www.astromatic.net/download/swarp
 #swig-url = https://sourceforge.net/projects/swig/files/swig/swig-$(swig-version)
 #tides-url = http://akhlaghi.org/maneage-software
-#util-linux-url = https://mirrors.edge.kernel.org/pub/linux/utils/util-linux/v2.35/
+#util-linux-url = https://mirrors.edge.kernel.org/pub/linux/utils/util-linux/v2.40
 #valgrind-url = https://sourceware.org/pub/valgrind
 #vim-url = ftp://ftp.vim.org/pub/vim/unix
 #wcslib-url = ftp://ftp.atnf.csiro.au/pub/software/wcslib
@@ -158,6 +158,7 @@
 #libxdmcp-url = https://www.x.org/pub/individual/lib
 #libxext-url = https://www.x.org/pub/individual/lib
 #libxext-url = https://www.x.org/archive/individual/lib/
+#libxt-url = https://www.x.org/archive/individual/lib
 #util-macros-url = https://www.x.org/pub/individual/util
 #xcb-proto-url = https://xorg.freedesktop.org/archive/individual/proto
 #xorgproto-url = https://xorg.freedesktop.org/archive/individual/proto
diff --git a/reproduce/software/config/versions.conf b/reproduce/software/config/versions.conf
index e8b8542..07bdb9e 100644
--- a/reproduce/software/config/versions.conf
+++ b/reproduce/software/config/versions.conf
@@ -17,51 +17,51 @@
 # --------------------------------------------------------------
 #
 # CLASS:BASIC (important identifier for 'awk'; don't modify this line)
-bash-version = 5.2-rc2
-binutils-version = 2.39
+bash-version = 5.2.37
+binutils-version = 2.43.1
 bison-version = 3.8.2
-coreutils-version = 9.1
-curl-version = 7.84.0
-dash-version = 0.5.11-057cd65
-diffutils-version = 3.8
-file-version = 5.42
-findutils-version = 4.9.0
+coreutils-version = 9.6
+curl-version = 8.11.1
+dash-version = 0.5.12
+diffutils-version = 3.10
+file-version = 5.46
+findutils-version = 4.10.0
 flock-version = 0.4.0
-gawk-version = 5.1.1
-gcc-version = 12.1.0
-gettext-version = 0.21
-git-version = 2.37.1
-gmp-version = 6.2.1
-grep-version = 3.7
-gzip-version = 1.12
-help2man-version = 1.49.2
-isl-version = 0.24
-less-version = 590
-libiconv-version = 1.17
-libtool-version = 2.4.7
-libunistring-version = 1.0
-libxml2-version = 2.9.12
-lzip-version = 1.23
+gawk-version = 5.3.1
+gcc-version = 14.2.0
+gettext-version = 0.23.1
+git-version = 2.48.1
+gmp-version = 6.3.0
+grep-version = 3.11
+gzip-version = 1.13
+help2man-version = 1.49.3
+isl-version = 0.27
+less-version = 668
+libiconv-version = 1.18
+libtool-version = 2.5.4
+libunistring-version = 1.3
+libxml2-version = 2.13.5
+lzip-version = 1.25
 m4-version = 1.4.19
-make-version = 4.3
-mpc-version = 1.2.1
-mpfr-version = 4.1.0
-nano-version = 6.4
-ncurses-version = 6.3
-openssl-version = 3.0.5
-perl-version = 5.36.0
+make-version = 4.4.1
+mpc-version = 1.3.1
+mpfr-version = 4.2.1
+nano-version = 8.3
+ncurses-version = 6.5
+openssl-version = 3.4.0
+perl-version = 5.40.1
 pkgconfig-version = 0.29.2
-podlators-version = 4.14
-readline-version = 8.2-rc2
-sed-version = 4.8
-tar-version = 1.34
-texinfo-version = 6.8
+podlators-version = 6.0.2
+readline-version = 8.2.13
+sed-version = 4.9
+tar-version = 1.35
+texinfo-version = 7.2
 unzip-version = 6.0
-wget-version = 1.21.2
-which-version = 2.21
-xz-version = 5.2.5
+wget-version = 1.25.0
+which-version = 2.23
+xz-version = 5.6.3
 zip-version = 3.0
-zlib-version = 1.2.11
+zlib-version = 1.3.1
 
 # Version-dependent build
 # -----------------------
@@ -78,7 +78,7 @@ bzip2-version = 1.0.8
 # '/etc/ssl/cert.pem' (which may be a symbolic link to its actual
 # location). The current version was taken from an up-to-date ArchLinux at
 # the date that is also equal to the version.
-certpem-version = 2021-10-15
+certpem-version = 2025-02-10
 
 # PatchELF
 # --------
@@ -107,38 +107,38 @@ apr-util-version = 1.6.1
 apr-version = 1.7.0
 astrometrynet-version = 0.91
 atlas-version = 3.10.3
-autoconf-version = 2.71
-automake-version = 1.16.5
+autoconf-version = 2.72
+automake-version = 1.17
 boost-version = 1.77.0
 cairo-version = 1.16.0
 cdsclient-version = 3.84
-cfitsio-version = 4.1.0
-cmake-version = 3.24.0
+cfitsio-version = 4.5.0
+cmake-version = 3.31.5
 eigen-version = 3.4.0
 emacs-version = 28.1
-expat-version = 2.4.1
+expat-version = 2.6.4
 fftw-version = 3.3.10
 flex-version = 2.6.4-410-74a89fd
-freetype-version = 2.11.0
+freetype-version = 2.13.3
 gdb-version = 11.1
 ghostscript-fonts-gnu-version = 6.0
 ghostscript-fonts-std-version = 8.11
-ghostscript-version = 9.56.1
-gnuastro-version = 0.18
+ghostscript-version = 10.04.0
+gnuastro-version = 0.23
 gperf-version = 3.1
-gsl-version = 2.7
+gsl-version = 2.8
 icu-version = 70.1
 imagemagick-version = 7.1.0-13
 imfit-version = 1.6.1
 libbsd-version = 0.11.3
-libffi-version = 3.4.2
-libidn-version = 1.38
-libjpeg-version = 9e
+libffi-version = 3.4.7
+libidn-version = 1.42
+libjpeg-version = 9f
 libmd-version = 1.0.4
 libnsl-version = 1.2.0-4a062cf
-libpaper-version = 1.1.28
-libpng-version = 1.6.37
-libtiff-version = 4.4.0
+libpaper-version = 1.1.29
+libpng-version = 1.6.46
+libtiff-version = 4.7.0
 libtirpc-version = 1.2.6
 metastore-version = 1.1.2-23-fa9170b
 missfits-version = 2.8.0
@@ -149,7 +149,7 @@ patch-version = 2.7.6
 pcre-version = 8.44
 pixman-version = 0.40.0
 plplot-version = 5.15.0
-python-version = 3.10.6
+python-version = 3.13.2
 r-cran-version = 4.1.2
 rpcsvc-proto-version = 1.4
 scamp-version = 2.10.0
@@ -158,33 +158,33 @@ sextractor-version = 2.25.0
 swarp-version = 2.41.5
 swig-version = 4.0.2
 tides-version = 2.0
-util-linux-version = 2.38.1
+util-linux-version = 2.40.4
 valgrind-version = 3.18.1
 vim-version = 9.0
-wcslib-version = 7.11
+wcslib-version = 8.4
 xlsxio-version = 0.2.21
 yaml-version = 0.2.5
 
 # Xorg packages
-fontconfig-version = 2.14.0
-libice-version = 1.0.10
-libpthread-stubs-version = 0.4
-libsm-version = 1.2.3
+fontconfig-version = 2.16.0
+libice-version = 1.1.2
+libpthread-stubs-version = 0.5
+libsm-version = 1.2.5
 libx11-version = 1.8
-libxau-version = 1.0.9
-libxcb-version = 1.15
-libxdmcp-version = 1.1.3
-libxext-version = 1.3.4
-libxt-version = 1.2.1
-util-macros-version = 1.19.3
-xcb-proto-version = 1.15
-xorgproto-version = 2022.1
-xtrans-version = 1.4.0
+libxau-version = 1.0.12
+libxcb-version = 1.17.0
+libxdmcp-version = 1.1.5
+libxext-version = 1.3.6
+libxt-version = 1.3.1
+util-macros-version = 1.20.2
+xcb-proto-version = 1.17.0
+xorgproto-version = 2024.1
+xtrans-version = 1.5.2
 
 # Version-dependent build
 # -----------------------
 lapack-version = 3.8.0
-libgit2-version = 1.3.0
+libgit2-version = 1.9.0
 
 # Netpbm's questions in the configure steps maybe change with different or
 # new versions.
diff --git a/reproduce/software/make/basic.mk b/reproduce/software/make/basic.mk
index 68c40b3..628a0e2 100644
--- a/reproduce/software/make/basic.mk
+++ b/reproduce/software/make/basic.mk
@@ -774,7 +774,7 @@ $(ibidir)/openssl-$(openssl-version): $(ibidir)/podlators-$(podlators-version) \
 #	First download the certificates and copy them into the
 #	installation directory.
 	tarball=cert.pem-$(certpem-version)
-	$(call import-source, $(cert-url), $(cert-checksum))
+	$(call import-source, $(certpem-url), $(certpem-checksum))
 	cp $(tdir)/cert.pem-$(certpem-version) $(idir)/etc/ssl/cert.pem
 
 #	Now download the OpenSSL tarball.
diff --git a/reproduce/software/make/high-level.mk b/reproduce/software/make/high-level.mk
index 2274c45..fdab193 100644
--- a/reproduce/software/make/high-level.mk
+++ b/reproduce/software/make/high-level.mk
@@ -118,11 +118,16 @@ else
 
 endif
 
+# Disable the TeXLive target if `--offline`
+ifneq ($(strip $(offline)),1)
+  target-texlive := $(itidir)/texlive
+endif
+
 # Ultimate Makefile target.
 all: $(foreach p, $(targets-proglib), $(ibidir)/$(p)) \
      $(foreach p, $(targets-python), $(ipydir)/$(p)) \
      $(foreach p, $(targets-r-cran),  $(ircrandir)/$(p)) \
-     $(itidir)/texlive
+     $(target-texlive)
 
 # Define the shell environment
 # ----------------------------
@@ -433,11 +438,14 @@ $(ibidir)/cfitsio-$(cfitsio-version):
 #	Continue the standard build on the customized tarball. Note that
 #	with the installation of CFITSIO, 'fpack' and 'funpack' are not
 #	installed by default. Because of that, they are added explicity.
+#
+#	Note that older versions of CFITSIO (before 4.4.0) require a
+#	specific 'shared' target for the building of the shared libraries.
 	export gbuild_tar=$(ddir)/$$customtar
 	$(call gbuild, cfitsio-$(cfitsio-version), , \
 	               --enable-sse2 --enable-reentrant \
 	               --with-bzip2=$(idir), , \
-	               make shared fpack funpack)
+	               make fpack funpack)
 	rm $$customtar
 	echo "CFITSIO $(cfitsio-version)" > $@
 
@@ -921,8 +929,8 @@ $(ibidir)/libgit2-$(libgit2-version): $(ibidir)/cmake-$(cmake-version)
 	              -DUSE_SSH=OFF -DBUILD_CLAR=OFF \
 	              -DTHREADSAFE=ON -DUSE_ICONV=OFF )
 	if [ x$(on_mac_os) = xyes ]; then
-	  install_name_tool -id $(ildir)/libgit2.1.3.dylib \
-	                        $(ildir)/libgit2.1.3.dylib
+	  install_name_tool -id $(ildir)/libgit2.1.9.dylib \
+	                        $(ildir)/libgit2.1.9.dylib
 	fi
 	echo "Libgit2 $(libgit2-version)" > $@
 
@@ -1156,7 +1164,9 @@ $(ibidir)/ghostscript-$(ghostscript-version): \
 	            --disable-cups \
 	            --enable-dynamic \
 	            --disable-compile-inits \
-	            CFLAGS="-DPNG_ARM_NEON_OPT=0"
+		    --disable-hidden-visibility \
+		    CFLAGS="-DPNG_ARM_NEON_OPT=0" \
+		    LDFLAGS=-Wl,--copy-dt-needed-entries
 
 #	Build and install the program and the shared libraries.
 	make    V=1 -j$(numthreads)
@@ -1642,7 +1652,10 @@ $(ibidir)/swig-$(swig-version):
 # '$(ibdir)'. If any program does need 'util-linux' libraries, they can
 # simply add the proper directories to the environment variables, see
 # 'fontconfig' for example.
-$(ibidir)/util-linux-$(util-linux-version): | $(idircustom)
+$(ibidir)/util-linux-$(util-linux-version): \
+                     $(ibidir)/autoconf-$(autoconf-version) \
+                     $(ibidir)/automake-$(automake-version) \
+                     | $(idircustom)
 
 #	Import the source.
 	tarball=util-linux-$(util-linux-version).tar.lz
@@ -1663,18 +1676,20 @@ $(ibidir)/util-linux-$(util-linux-version): | $(idircustom)
 	  git apply util-linux-$(util-linux-version)-macos.patch
 	fi
 
-#       The 'mkswap' feature needs low-level file system and kernel headers
-#       that are not always available (in particular on older Linux
-#       kernels). Also, creating SWAP space will need root permissions, so
-#       its not something a Maneager may need! Unfortunately there is no
-#       configuration option to disable this so we'll have to disable it
-#       manually by commenting the relevant files in the
-#       'configure.ac'. Having a more recent 'configure.ac' will trigger
-#       the './configure' script to be re-created after the first run, but
-#       it is pretty fast and not a problem.
+#	The 'mkswap' feature needs low-level file system and kernel headers
+#	that are not always available (in particular on older Linux
+#	kernels). Also, creating SWAP space will need root permissions, so
+#	its not something a Maneager may need! Unfortunately there is no
+#	configuration option to disable this so we'll have to disable it
+#	manually by commenting the relevant files in the
+#	'configure.ac'.
 	sed -e's|UL_BUILD_INIT(\[mkswap\], \[yes\])|UL_BUILD_INIT(\[mkswap\], \[no\])|' \
 	    -i configure.ac
 
+#	Having updated 'configure.ac', we need to re-generate the
+#	'./configure' script with 'autoreconf' (which is part of Autoconf
+#	and needs Automake; hence why they are dependencies.
+	autoreconf -f
 
 #	Configure Util-linux
 	export CONFIG_SHELL=$(ibdir)/bash
@@ -1682,6 +1697,7 @@ $(ibidir)/util-linux-$(util-linux-version): | $(idircustom)
 	            --disable-dependency-tracking \
 	            --enable-libmount-support-mtab \
 	            --disable-silent-rules \
+	            --disable-liblastlog2 \
 	            --disable-mountpoint \
 	            --disable-libmount \
 	            --disable-unshare \
diff --git a/reproduce/software/make/python.mk b/reproduce/software/make/python.mk
index deeccf2..43e2e77 100644
--- a/reproduce/software/make/python.mk
+++ b/reproduce/software/make/python.mk
@@ -106,13 +106,17 @@ $(ibidir)/python-$(python-version): $(ibidir)/libffi-$(libffi-version)
 #	libraries to link to and those are blocked at this level). So we
 #	need to add an extra line on top of the 'os.system' funciton and
 #	put '/usr/lib' in 'LD_LIBRARY_PATH' within Python's environment for
-#	system calls (with 'os.putenv').
-	awk '{if(/os.system\(/) \
-	       { print "    os.putenv(\"LD_LIBRARY_PATH\", \"$$LD_LIBRARY_PATH:$(sys_library_sh_path)\");"; \
-	         print $$0;} \
-	      else print $$0}' \
-	    setup.py > setup-tmp.py
-	mv setup-tmp.py setup.py
+#	system calls (with 'os.putenv'). As of Python 3.13.2 the tarball no
+#	longer has an 'setup.py'. But when it did, the change below was
+#	necessary.
+	if [ -f setup.py ]; then
+	   awk '{if(/os.system\(/) \
+	          { print "    os.putenv(\"LD_LIBRARY_PATH\", \"$$LD_LIBRARY_PATH:$(sys_library_sh_path)\");"; \
+	            print $$0;} \
+	         else print $$0}' \
+	       setup.py > setup-tmp.py
+	   mv setup-tmp.py setup.py
+	fi
 
 #	Do the basic installation and delete the temporary directory.
 	./configure SHELL=$(ibdir)/bash \
diff --git a/reproduce/software/make/xorg.mk b/reproduce/software/make/xorg.mk
index 3f99fab..864c32a 100644
--- a/reproduce/software/make/xorg.mk
+++ b/reproduce/software/make/xorg.mk
@@ -79,7 +79,7 @@ $(ibidir)/libxau-$(libxau-version): $(ibidir)/xorgproto-$(xorgproto-version)
 
 # Library implementing the X Display Manager Control Protocol.
 $(ibidir)/libxdmcp-$(libxdmcp-version): $(ibidir)/libxau-$(libxau-version)
-	tarball=libXdmcp-$(libxdmcp-version).tar.bz2
+	tarball=libXdmcp-$(libxdmcp-version).tar.lz
 	$(call import-source, $(libxdmcp-url), $(libxdmcp-checksum))
 	$(call gbuild, libXdmcp-$(libxdmcp-version),,$(XORG_CONFIG), V=1)
 	echo "libXdmcp (Xorg) $(libxdmcp-version)" > $@
diff --git a/reproduce/software/shell/configure.sh b/reproduce/software/shell/configure.sh
index 857f3b5..f226ced 100755
--- a/reproduce/software/shell/configure.sh
+++ b/reproduce/software/shell/configure.sh
@@ -1612,11 +1612,11 @@ fi
 # which will download the DOI-resolved webpage, and extract the Zenodo-URL
 # of the most recent version from there (using the 'coreutils' tarball as
 # an example, the directory part of the URL for all the other software are
-# the same). This is not done if the option '--debug' is used.
+# the same). This is not done if the options '--debug' or `--offline` are used.
 zenodourl=""
 user_backup_urls=""
 zenodocheck=.build/software/zenodo-check.html
-if [ x$debug = x ]; then
+if [ x$debug = x ] && [ x$offline = x ]; then
   if $downloader $zenodocheck https://doi.org/10.5281/zenodo.3883409; then
       zenodourl=$(sed -n -e'/coreutils/p' $zenodocheck \
                       | sed -n -e'/http/p' \
@@ -1723,6 +1723,7 @@ fi
                on_mac_os=$on_mac_os \
                sys_cpath=$sys_cpath \
                host_cc=$host_cc \
+               offline=$offline \
                -j$numthreads
 
 
diff --git a/reproduce/software/shell/tarball-prepare.sh b/reproduce/software/shell/tarball-prepare.sh
index e12ff98..09e1c89 100755
--- a/reproduce/software/shell/tarball-prepare.sh
+++ b/reproduce/software/shell/tarball-prepare.sh
@@ -159,12 +159,19 @@ for f in $allfiles; do
     name=$(echo $(basename $f) \
 	       | sed -e 's/.tar.*//' -e's/_/-/')
 
+    # Lzip will not be available to unpack Lzip itself, so just use Tar.
+    if [[ $name =~ ^lzip ]]; then
+      outname=$name.tar
+    else
+      outname=$name.tar.lz
+    fi
+
     # Skip previously packed files
-    if [ -f $odir/$name.tar.lz ]; then
+    if [ -f $odir/$outname ]; then
 
         # Print the info message if not in quiet mode
         if [ -z $quiet ]; then
-            echo "$scriptname: $odir/$name.tar.lz: already present in output directory"
+            echo "$scriptname: $odir/$outname: already present in output directory"
         fi
 
         # skip this file
@@ -206,19 +213,26 @@ for f in $allfiles; do
     # Put the current date on all the files because some packagers will not
     # add dates to their release tarballs, resulting in dates of the
     # Unix-time zero'th second (1970-01-01 at 00:00:00)!
-    touch $(find "$name"/ -type f)
+    # -print0 is needed for those tarballs that has paths with spaces. For
+    # the same reason it's needed also `xargs -0`. (`xargs` is needed also
+    # for large tarballs such as gcc's)
+    find "$name"/ -type f -print0 | xargs -0 touch
 
     # Pack with recommended options
     tar -c -Hustar --owner=root --group=root \
         -f $name.tar $name/
-    lzip -9 $name.tar
+
+    # Lzip will not be available when unpacking Lzip, so we just use Tar.
+    if [[ ! $name =~ ^lzip ]]; then
+        lzip -9 $name.tar
+    fi
 
     # Move the compressed file from the temporary directory to the target
     # output directory
-    mv $name.tar.lz $odir/
+    mv $outname $odir/
 
     # Print the sha512sum along with the filename for a quick reference
-    echo $(sha512sum $odir/$name.tar.lz)
+    echo $(sha512sum $odir/$outname)
 
     # Clean up the temporary directory
     rm -rf $tmpdir