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diff --git a/README-hacking.md b/README-hacking.md index 219e825..a86581c 100644 --- a/README-hacking.md +++ b/README-hacking.md @@ -174,150 +174,157 @@ Published works using Maneage The list below shows some of the works that have already been published with (earlier versions of) Maneage, and some that have been recently -submitted for peer review. The previous version of Maneage was called -"Reproducible paper template", with a separate git tree. Maneage is -evolving rapidly, so some details will differ between the different -versions. The more recent papers will tend to be the most useful as good -working examples. - +submitted for peer review. Maneage is evolving rapidly, so some details +will differ between the different versions. The more recent papers will +tend to be the most useful as good working examples if you are just +starting. + +In the list below, by clicking on the paper's publication year, you will be +taken to the paper's indexed page on the [SciX Digital +Library](https://scixplorer.org) (successor to the [NASA +ADS](https://ui.adsabs.harvard.edu)) which contains further bibliographic +information like title, DOI and etc, in a unified format (independent of +which journal the paper is published in). - Eskandarlou et - al. [2026](https://ui.adsabs.harvard.edu/abs/2025arXiv251012940E), - Astronomy and Astrophysics (A&A), accepted. The project's version - controlled source is on + al. ([2026](https://scixplorer.org/abs/2026A%26A...705A..67E), A&A, + Volume 705, id.A67, 14 pp; + arXiv:[2510.12940](https://arxiv.org/abs/2510.12940)). The project's + version controlled source is on [Gitlab](https://gitlab.com/Sepideh.Esk/psf-j-plus), necessary software, outputs and backup of history are available at [zenodo.17348653](http://doi.org/10.5281/zenodo.17348653); and the archived git history is available at [swh:1:dir:fc95ed9ad173de6fa64690e3d71ab041c630f32c](https://archive.softwareheritage.org/swh:1:dir:fc95ed9ad173de6fa64690e3d71ab041c630f32c;origin=https://gitlab.com/Sepideh.Esk/psf-j-plus;visit=swh:1:snp:31bb4550902f7902a0a65d0674106271de776d3e;anchor=swh:1:rev:4860c70d6285a60300e429889e8637e98568a915). - - - Saremi et - al. [2025](https://ui.adsabs.harvard.edu/abs/2025A%26A...701A.116S), - Astronomy and Astrophysics (A&A), Volume 701, id.A116. The project's + - Saremi et al. ([2025](https://scixplorer.org/abs/2025A%26A...701A.116S), + A&A, Volume 701, id.A116, 18 pp.; + arXiv:[2508.02780](https://arxiv.org/abs/2508.02780)). The project's version controlled source is on [Gitlab](https://gitlab.com/nasim-projects/pipeline), necessary software, outputs and backup of history are available at [zenodo.16152699](https://doi.org/10.5281/zenodo.16152699); and the archived git history is available at [swh:1:dir:b3657cfb6053fd976695bd63c15cb99e5095648a](https://archive.softwareheritage.org/swh:1:dir:b3657cfb6053fd976695bd63c15cb99e5095648a;origin=https://gitlab.com/nasim-projects/pipeline;visit=swh:1:snp:ab7c6f0b9999f42d77154103c1bc082fa23b325c;anchor=swh:1:rev:afeb282c01983cba2a11eb4b2f25d5a40d35c164). - - Eskandarlou & Akhlaghi - [2024](https://ui.adsabs.harvard.edu/abs/2024RNAAS...8..168E), Research - Notes in American Astronomical Society (RNAAS), Volume 8, Issue 6, - id.168. The project's version controlled source is on + ([2024](https://scixplorer.org/abs/2024RNAAS...8..168E), RNAAS, Volume + 8, Issue 6, id.168; + arXiv:[2406.14619](https://arxiv.org/abs/2406.14619)). The project's + version controlled source is on [Codeberg](https://codeberg.org/gnuastro/papers) (the `polar-plot` branch). Necessary software, outputs and backup of history are available at [zenodo.11403643](https://doi.org/10.5281/zenodo.11403643); and the archived git history is available at [swh:1:dir:4e09bf85f9f87336fa55920bf67e7bcf6d58bbd5](https://archive.softwareheritage.org/swh:1:dir:4e09bf85f9f87336fa55920bf67e7bcf6d58bbd5;origin=https://codeberg.org/gnuastro/papers;visit=swh:1:snp:557ee1a90de465659659ecc46df0c5ce29d0bb61;anchor=swh:1:rev:375e12e52080006be6a28e10980e79ef54d13d1d). - - Infante-Sainz et - al. [2024](https://ui.adsabs.harvard.edu/abs/2024RNAAS...8...22I), - Research Notes in American Astronomical Society (RNAAS), Volume 8, Issue - 1, id.22. The project's version controlled source is on + al. ([2024](https://scixplorer.org/abs/2024RNAAS...8...22I), RNAAS, + Volume 8, Issue 1, id.22; + arXiv:[2401.05303](https://arxiv.org/abs/2401.05303)). The project's + version controlled source is on [Codeberg](https://codeberg.org/gnuastro/papers) (the `radial-profile` branch). Necessary software, outputs and backup of history are available at [zenodo.10124582](https://doi.org/10.5281/zenodo.10124582); and the archived git history is available at [swh:1:dir:d5029e066916cb64f0d95d20eb88294acc78b2b1](https://archive.softwareheritage.org/swh:1:dir:d5029e066916cb64f0d95d20eb88294acc78b2b1;origin=https://codeberg.org/gnuastro/papers;visit=swh:1:snp:b065324c2ef3b48bc26e8f30e48102a1abd2052f;anchor=swh:1:rev:61764447b16da44538e5ddbf7fb69937ba138e81). - - Infante-Sainz & Akhlaghi - [2024](https://ui.adsabs.harvard.edu/abs/2024RNAAS...8...10I), Research - Notes in American Astronomical Society (RNAAS), Volume 8, Issue 1, - id.10. The project's version controlled source is on + ([2024](https://scixplorer.org/abs/2024RNAAS...8...10I), RNAAS, Volume + 8, Issue 1, id.10; + arXiv:[2401.03814](https://arxiv.org/abs/2401.03814)). The project's + version controlled source is on [Codeberg](https://codeberg.org/gnuastro/papers) (the `color-faint-gray` branch). Necessary software, outputs and backup of history are available at [zenodo.10058165](https://doi.org/10.5281/zenodo.10058165); and the archived git history is available at [swh:1:dir:1064a48d4bb58d6684c3df33c6633a04d4141d2d](https://archive.softwareheritage.org/swh:1:dir:1064a48d4bb58d6684c3df33c6633a04d4141d2d;origin=https://codeberg.org/gnuastro/papers;visit=swh:1:snp:a083ff647c571f895d1ccc9f7432fa1b9a1d03a8;anchor=swh:1:rev:ff77b619daa50b05ddd83206d979d1f8a53d040b). - - Eskandarlou et - al. [2023](https://ui.adsabs.harvard.edu/abs/2023RNAAS...7..269E), - Research Notes in American Astronomical Society (RNAAS), Volume 7, Issue - 12, id.269. The project's version controlled source is on + al. ([2023](https://scixplorer.org/abs/2023RNAAS...7..269E), RNAAS, + Volume 7, Issue 12, id.269; + arXiv:[2312.04263](https://arxiv.org/abs/2312.04263)). The project's + version controlled source is on [Codeberg](https://codeberg.org/gnuastro/papers) (the `zeropoint` branch). Necessary software, outputs and backup of history are available at [zenodo.10256845](https://doi.org/10.5281/zenodo.10256845); and the archived git history is available at [swh:1:dir:8b2d1f63be96de3de03aa3e2bb68fa7fa52df56f](https://archive.softwareheritage.org/swh:1:dir:8b2d1f63be96de3de03aa3e2bb68fa7fa52df56f;origin=https://codeberg.org/gnuastro/papers;visit=swh:1:snp:e37e226bab517eef24d854467682b2fcf5d7dc32;anchor=swh:1:rev:ea682783d83707c0e1d114a5de74a100be9f545d). - - - Akhlaghi [2023](https://ui.adsabs.harvard.edu/abs/2023RNAAS...7..211A), - Research Notes in American Astronomical Society (RNAAS), Volume 7, Issue - 10, id.211. The project's version controlled source is on + - Akhlaghi ([2023](https://scixplorer.org/abs/2023RNAAS...7..211A), RNAAS), Volume 7, Issue + 10, id.211; arXiv:[2310.15006](https://arxiv.org/abs/2310.15006)). The + project's version controlled source is on [Codeberg](https://codeberg.org/gnuastro/papers) (the `pointing-simulate` branch). - - Borkowska & Roukema - ([2022](https://ui.adsabs.harvard.edu/abs/2022CQGra..39u5007B), - Classical and Quantum Gravity, arXiv:2112.14174): The live version of - the controlled source is [at + ([2022](https://scixplorer.org/abs/2022CQGra..39u5007B), Classical and + Quantum Gravity, Volume 39, Issue 21, id.215007, 29 pp; + arXiv:[2112.14174](https://arxiv.org/abs/2112.14174)): The live version + of the controlled source is [at Codeberg](https://codeberg.org/boud/gevcurvtest); the main input dataset, a software snapshot, the software tarballs, the project outputs and editing history are available at [zenodo.5806027](https://doi.org/10.5281/zenodo.5806027); and the archived git history is available at [swh:1:rev:54398b720ddbac269ede30bf1e27fe27f07567f7](https://archive.softwareheritage.org/browse/revision/54398b720ddbac269ede30bf1e27fe27f07567f7). - - - Peper & Roukema - ([2021](https://ui.adsabs.harvard.edu/abs/2021MNRAS.505.1223P), MNRAS, - 505, 1223, DOI:10.1093/mnras/stab1342, arXiv:2010.03742): The live - version of the controlled source is [at + - Peper & Roukema ([2021](https://scixplorer.org/abs/2021MNRAS.505.1223P), + MNRAS, 505, 1223; arXiv:[2010.03742](https://arxiv.org/abs/2010.03742)): + The live version of the controlled source is [at Codeberg](https://codeberg.org/boud/elaphrocentre); the main input dataset, a software snapshot, the software tarballs, the project outputs and editing history are available at [zenodo.4699702](https://zenodo.org/record/4699702); and the archived git history is available at [swh:1:rev:a029edd32d5cd41dbdac145189d9b1a08421114e](https://archive.softwareheritage.org/swh:1:rev:a029edd32d5cd41dbdac145189d9b1a08421114e). - - - Roukema ([2021](https://ui.adsabs.harvard.edu/abs/2021PeerJ...911856R), - PeerJ, 9:e11856, arXiv:2007.11779): The live version of the controlled - source is [at Codeberg](https://codeberg.org/boud/subpoisson); the main - input dataset, a software snapshot, the software tarballs, the project - outputs and editing history are available at + - Roukema ([2021](https://scixplorer.org/abs/2021PeerJ...911856R), PeerJ, + Vol. 9, article id. e11856; + arXiv:[2007.11779](https://arxiv.org/abs/2007.11779)): The live version + of the controlled source is [at + Codeberg](https://codeberg.org/boud/subpoisson); the main input dataset, + a software snapshot, the software tarballs, the project outputs and + editing history are available at [zenodo.4765705](https://zenodo.org/record/4765705); and the archived git history is available at [swh:1:rev:72242ca8eade9659031ea00394a30e0cc5cc1c37](https://archive.softwareheritage.org/swh:1:rev:72242ca8eade9659031ea00394a30e0cc5cc1c37). - - - Akhlaghi et - al. ([2021](https://ui.adsabs.harvard.edu/abs/2021CSE....23c..82A), - CiSE, 23(3), 82 DOI:10.1109/MCSE.2021.3072860 arXiv:2006.03018): The - project's version controlled source is [on + - Akhlaghi et al. ([2021](https://scixplorer.org/abs/2021CSE....23c..82A), + CiSE, 23(3), 82; arXiv:[2006.03018](https://arxiv.org/abs/2006.03018)): + The project's version controlled source is [on Gitlab](https://gitlab.com/makhlaghi/maneage-paper), necessary software, outputs and backup of history are available at [zenodo.3872248](https://doi.org/10.5281/zenodo.3872248); and the archived git history is available at [swh:1:dir:45a9e282a86145fe9babef529c8fce52ffe8d717](https://archive.softwareheritage.org/swh:1:dir:45a9e282a86145fe9babef529c8fce52ffe8d717). - - Infante-Sainz et - al. ([2020](https://ui.adsabs.harvard.edu/abs/2020MNRAS.491.5317I), - MNRAS, 491, 5317): The version controlled project source is available - [on GitLab](https://gitlab.com/infantesainz/sdss-extended-psfs-paper) - and is also archived on Zenodo with all the necessary software tarballs: + al. ([2020](https://scixplorer.org/abs/2020MNRAS.491.5317I), MNRAS, 491, + 5317; arXiv:[1911.01430](https://arxiv.org/abs/1911.01430)): The version + controlled project source is available [on + GitLab](https://gitlab.com/infantesainz/sdss-extended-psfs-paper) and is + also archived on Zenodo with all the necessary software tarballs: [zenodo.3524937](https://zenodo.org/record/3524937). - - - Akhlaghi ([2019](https://arxiv.org/abs/1909.11230), IAU Symposium - 355). The version controlled project source is available - [on GitLab](https://gitlab.com/makhlaghi/iau-symposium-355) and is also + - Akhlaghi ([2019](https://scixplorer.org/abs/2019arXiv190911230A), IAU + Symposium 355; + arXiv:[1909.11230](https://arxiv.org/abs/1909.11230)). The version + controlled project source is available [on + GitLab](https://gitlab.com/makhlaghi/iau-symposium-355) and is also archived on Zenodo with all the necessary software tarballs: [zenodo.3408481](https://doi.org/10.5281/zenodo.3408481). +The items below were the precursors to Maneage. In other words, the work to +have reproducible results in the items below lead to what is now +Maneage. They are therefore much less complete than what Maneage is today, +but are important from a historical perspective. - Section 7.3 of Bacon et - al. ([2017](http://adsabs.harvard.edu/abs/2017A%26A...608A...1B), A&A - 608, A1): The version controlled project source is available [on + al. ([2017](https://scixplorer.org/abs/2017A%26A...608A...1B), A&A 608, + A1; arXiv:[1710.03002](https://arxiv.org/abs/1710.03002)): The version + controlled project source is available [on GitLab](https://gitlab.com/makhlaghi/muse-udf-origin-only-hst-magnitudes) and a snapshot of the project along with all the necessary input datasets and outputs is available in [zenodo.1164774](https://doi.org/10.5281/zenodo.1164774). - - Section 4 of Bacon et - al. ([2017](http://adsabs.harvard.edu/abs/2017A%26A...608A...1B), A&A, - 608, A1): The version controlled project is available [on + al. ([2017](https://scixplorer.org/abs/2017A%26A...608A...1B), A&A, 608, + A1; arXiv:[1710.03002](https://arxiv.org/abs/1710.03002)): The version + controlled project is available [on GitLab](https://gitlab.com/makhlaghi/muse-udf-photometry-astrometry) and a snapshot of the project along with all the necessary input datasets is available in [zenodo.1163746](https://doi.org/10.5281/zenodo.1163746). - - Akhlaghi & Ichikawa - ([2015](http://adsabs.harvard.edu/abs/2015ApJS..220....1A), ApJS, 220, - 1): The version controlled project is available [on + ([2015](https://scixplorer.org/abs/2015ApJS..220....1A), ApJS, 220, 1; + arXiv:[1505.01664](https://arxiv.org/abs/1505.01664)): The version + controlled project is available [on GitLab](https://gitlab.com/makhlaghi/NoiseChisel-paper). This is the very first (and much less mature!) incarnation of Maneage: the history of Maneage started more than two years after this paper was |