Replaced all occurances of pipeline in text

All occurances of "pipeline" have been chanaged to "project" or "template"
withint the text (comments, READMEs, and comments) of the template. The
main template branch is now also named `template'.

This was all because `pipeline' is too generic and couldn't be
distinguished from the base, and customized project.

1 files changed, 12 insertions, 15 deletions

diff --git a/reproduce/src/make/dependencies.mk b/reproduce/src/make/dependencies.mk
index 72cb7c4..fd9bffa 100644
--- a/reproduce/src/make/dependencies.mk
+++ b/reproduce/src/make/dependencies.mk
@@ -1,4 +1,4 @@
-# Build the reproduction pipeline dependencies (programs and libraries).
+# Build the project's dependencies (programs and libraries).
 #
 # ------------------------------------------------------------------------
 #                      !!!!! IMPORTANT NOTES !!!!!
@@ -46,7 +46,7 @@ ipydir  = $(BDIR)/dependencies/installed/version-info/python
 
 # Define the top-level programs to build (installed in `.local/bin').
 #
-# About ATLAS: currently the core pipeline does not depend on ATLAS but many
+# About ATLAS: currently the template does not depend on ATLAS but many
 # high level software depend on it. The current rule for ATLAS is tested
 # successfully on Mac (only static) and GNU/Linux (shared and static). But,
 # since it takes a few hours to build, it is not currently a target.
@@ -486,12 +486,12 @@ $(ibidir)/cmake: $(tdir)/cmake-$(cmake-version).tar.gz \
 
 # cURL (and its library, which is needed by several programs here) can
 # optionally link with many different network-related libraries on the host
-# system that we are not yet building in the pipeline. Many of these are
+# system that we are not yet building in the template. Many of these are
 # not relevant to most science projects, so we are explicitly using
 # `--without-XXX' or `--disable-XXX' so cURL doesn't link with them. Note
-# that if it does link with them, the pipeline will crash when the library
-# is updated/changed by the host, and the whole purpose of this pipeline is
-# avoid dependency on the host as much as possible.
+# that if it does link with them, the configuration will crash when the
+# library is updated/changed by the host, and the whole purpose of this
+# project is avoid dependency on the host as much as possible.
 $(ibidir)/curl: $(tdir)/curl-$(curl-version).tar.gz
 	$(call gbuild, $<, curl-$(curl-version), ,       \
 	               LIBS="-pthread"                   \
@@ -526,7 +526,7 @@ $(ibidir)/git: $(tdir)/git-$(git-version).tar.xz \
 # Metastore is used (through a Git hook) to restore the source modification
 # dates of files after a Git checkout. Another Git hook saves all file
 # metadata just before a commit (to allow restoration after a
-# checkout). Since this pipeline is managed in Makefiles, file modification
+# checkout). Since this project is managed in Makefiles, file modification
 # dates are critical to not having to redo the whole analysis after
 # checking out between branches.
 #
@@ -583,8 +583,8 @@ $(ibidir)/metastore: $(tdir)/metastore-$(metastore-version).tar.gz \
 	  echo "metastore couldn't be installed!"
 	  echo
 	  echo "Its used for preserving timestamps on Git commits."
-	  echo "Its useful for development, not simple running of the pipeline."
-	  echo "So we won't stop the pipeline because it wasn't built."
+	  echo "Its useful for development, not simple running of the project."
+	  echo "So we won't stop the configuration because it wasn't built."
 	  echo "*****************"
 	fi
 
@@ -634,8 +634,8 @@ $(ibidir)/zip: $(tdir)/zip-$(zip-version).tar.gz
 # Since we want to avoid complicating the PATH, we are putting a symbolic
 # link of all the TeX Live executables in $(ibdir). But symbolic links are
 # hard to track for Make (as a target). Also, TeX in general is optional
-# for the pipeline (the processing is the main target, not the generation
-# of the final PDF). So we'll make a simple ASCII file called
+# for the project (the processing is the main target, not the generation of
+# the final PDF). So we'll make a simple ASCII file called
 # `texlive-ready-tlmgr' and use its contents to mark if we can use it or
 # not.
 $(itidir)/texlive-ready-tlmgr: $(tdir)/install-tl-unx.tar.gz \
@@ -648,7 +648,7 @@ $(itidir)/texlive-ready-tlmgr: $(tdir)/install-tl-unx.tar.gz \
 	rm -rf install-tl-*
 	tar xf $(tdir)/install-tl-unx.tar.gz
 	cd install-tl-*
-	sed -e's|@installdir[@]|$(idir)|g' -e's|@topdir[@]|'"$$topdir"'|g' \
+	sed -e's|@installdir[@]|$(idir)|g' \
 	    $$topdir/reproduce/config/pipeline/texlive.conf > texlive.conf
 
         # TeX Live's installation may fail due to any reason. But TeX Live
@@ -688,9 +688,6 @@ $(itidir)/texlive: reproduce/config/pipeline/dependency-texlive.mk \
 	if [ x"$$res" = x"NOT!" ]; then
 	  echo "" > $@
 	else
-          # The current directory is necessary later.
-	  topdir=$$(pwd)
-
           # Install all the extra necessary packages. If LaTeX complains
           # about not finding a command/file/what-ever/XXXXXX, simply run
           # the following command to find which package its in, then add it