aboutsummaryrefslogtreecommitdiff
path: root/reproduce/software/config/installation
diff options
context:
space:
mode:
Diffstat (limited to 'reproduce/software/config/installation')
-rw-r--r--reproduce/software/config/installation/LOCAL.mk.in16
-rw-r--r--reproduce/software/config/installation/numpy-scipy.cfg46
-rw-r--r--reproduce/software/config/installation/texlive.conf35
-rw-r--r--reproduce/software/config/installation/texlive.mk22
-rw-r--r--reproduce/software/config/installation/versions.mk123
5 files changed, 242 insertions, 0 deletions
diff --git a/reproduce/software/config/installation/LOCAL.mk.in b/reproduce/software/config/installation/LOCAL.mk.in
new file mode 100644
index 0000000..785bb6a
--- /dev/null
+++ b/reproduce/software/config/installation/LOCAL.mk.in
@@ -0,0 +1,16 @@
+# Local project configuration.
+#
+# This is just a template for the `./configure' script to fill in. Please
+# don't make any change to this file.
+#
+# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+#
+# Copying and distribution of this file, with or without modification, are
+# permitted in any medium without royalty provided the copyright notice and
+# this notice are preserved. This file is offered as-is, without any
+# warranty.
+BDIR = @bdir@
+INDIR = @indir@
+DEPENDENCIES-DIR = @ddir@
+DOWNLOADER = @downloader@
+GROUP-NAME = @groupname@
diff --git a/reproduce/software/config/installation/numpy-scipy.cfg b/reproduce/software/config/installation/numpy-scipy.cfg
new file mode 100644
index 0000000..4b7a7b0
--- /dev/null
+++ b/reproduce/software/config/installation/numpy-scipy.cfg
@@ -0,0 +1,46 @@
+# THIS IS A COPY OF NUMPY'S site.cfg.example, CUSTOMIZED FOR THIS TEMPLATE
+# ------------------------------------------------------------------------
+
+# This file provides configuration information about non-Python
+# dependencies for numpy.distutils-using packages. Create a file like this
+# called "site.cfg" next to your package's setup.py file and fill in the
+# appropriate sections. Not all packages will use all sections so you
+# should leave out sections that your package does not use.
+#
+# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+#
+# Copying and distribution of this file, with or without modification, are
+# permitted in any medium without royalty provided the copyright notice and
+# this notice are preserved. This file is offered as-is, without any
+# warranty.
+
+# IMPORTANT NOTE
+# --------------
+#
+# The `ALL' grouping does't apply to ATLAS!!!!!
+
+ [ALL]
+ library_dirs = @LIBDIR@
+ include_dirs = @INCDIR@
+
+
+# FFT libraries
+# -------------
+# There are two FFT libraries that we can configure here: FFTW (2 and 3) and djbfft.
+# Note that these libraries are not used by numpy or scipy.
+#
+# http://fftw.org/
+# https://cr.yp.to/djbfft.html
+#
+# Given only this section, numpy.distutils will try to figure out which version
+# of FFTW you are using.
+
+# Even with this section, Numpy apparently does not use fftw. But we will
+# keep it here for the future (if a solution is found).
+[fftw]
+libraries = fftw3
+#
+# For djbfft, numpy.distutils will look for either djbfft.a or libdjbfft.a .
+#[djbfft]
+#include_dirs = /usr/local/djbfft/include
+#library_dirs = /usr/local/djbfft/lib
diff --git a/reproduce/software/config/installation/texlive.conf b/reproduce/software/config/installation/texlive.conf
new file mode 100644
index 0000000..53054e1
--- /dev/null
+++ b/reproduce/software/config/installation/texlive.conf
@@ -0,0 +1,35 @@
+# Basic profile for build. Values to set:
+#
+# installdir: Install directory
+#
+# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+#
+# Copying and distribution of this file, with or without modification, are
+# permitted in any medium without royalty provided the copyright notice and
+# this notice are preserved. This file is offered as-is, without any
+# warranty.
+selected_scheme scheme-basic
+TEXDIR @installdir@/texlive/2018
+TEXMFCONFIG @installdir@/texlive2018/texmf-config
+TEXMFLOCAL @installdir@/texlive/texmf-local
+TEXMFSYSCONFIG @installdir@/texlive/2018/texmf-config
+TEXMFSYSVAR @installdir@/texlive/2018/texmf-var
+TEXMFVAR @installdir@/texlive2018/texmf-var
+instopt_adjustpath 0
+instopt_adjustrepo 1
+instopt_letter 0
+instopt_portable 0
+instopt_write18_restricted 1
+tlpdbopt_autobackup 1
+tlpdbopt_backupdir @installdir@/texlive/2018/backups
+tlpdbopt_create_formats 1
+tlpdbopt_desktop_integration 1
+tlpdbopt_file_assocs 1
+tlpdbopt_generate_updmap 0
+tlpdbopt_install_docfiles 1
+tlpdbopt_install_srcfiles 1
+tlpdbopt_post_code 1
+tlpdbopt_sys_bin @installdir@/bin
+tlpdbopt_sys_info @installdir@/share/info
+tlpdbopt_sys_man @installdir@/share/man
+tlpdbopt_w32_multi_user 1
diff --git a/reproduce/software/config/installation/texlive.mk b/reproduce/software/config/installation/texlive.mk
new file mode 100644
index 0000000..0acf5ab
--- /dev/null
+++ b/reproduce/software/config/installation/texlive.mk
@@ -0,0 +1,22 @@
+# Necessary packages to install in TeX Live.
+#
+# If any extra TeX package is necessary to build your paper, just add its
+# name to this variable (you can check in `ctan.org' to find the official
+# name).
+#
+# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+#
+# Copying and distribution of this file, with or without modification, are
+# permitted in any medium without royalty provided the copyright notice and
+# this notice are preserved. This file is offered as-is, without any
+# warranty.
+
+
+# Note on `tex' and `fancyhdr': These two packages are installed along with
+# the basic installation scheme that we used to install tlmgr, they will be
+# ignored in the `tlmgr install' command, but will be used later when we
+# want their versions.
+texlive-packages = tex fancyhdr ec newtx fontaxes xkeyval etoolbox xcolor \
+ setspace caption footmisc datetime fmtcount titlesec \
+ preprint ulem biblatex biber logreq pgf pgfplots fp \
+ courier tex-gyre txfonts times
diff --git a/reproduce/software/config/installation/versions.mk b/reproduce/software/config/installation/versions.mk
new file mode 100644
index 0000000..149f9ae
--- /dev/null
+++ b/reproduce/software/config/installation/versions.mk
@@ -0,0 +1,123 @@
+# Versions of the various dependencies
+#
+# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+# Copyright (C) 2019 Raul Infante-Sainz <infantesainz@gmail.com>
+#
+# This Makefile is free software: you can redistribute it and/or modify it
+# under the terms of the GNU General Public License as published by the
+# Free Software Foundation, either version 3 of the License, or (at your
+# option) any later version.
+#
+# This Makefile is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
+# Public License for more details.
+#
+# A copy of the GNU General Public License is available at
+# <http://www.gnu.org/licenses/>.
+
+# C/C++ programs and libraries.
+atlas-version = 3.10.3
+bash-version = 5.0
+binutils-version = 2.31.1
+cfitsio-version = 3.45
+cmake-version = 3.14.2
+coreutils-version = 8.31
+curl-version = 7.63.0
+diffutils-version = 3.7
+fftw-version = 3.3.8
+file-version = 5.36
+findutils-version = 4.6.0.199-e3fc
+flock-version = 0.2.3
+freetype-version = 2.9
+gawk-version = 5.0.0
+gcc-version = 8.3.0
+ghostscript-version = 9.26
+git-version = 2.21.0
+gmp-version = 6.1.2
+gnuastro-version = 0.8
+grep-version = 3.3
+gsl-version = 2.5
+gzip-version = 1.10
+hdf5-version = 1.10.5
+isl-version = 0.18
+libbsd-version = 0.9.1
+libffi-version = 3.2.1
+libjpeg-version = v9b
+libpng-version = 1.6.36
+libtiff-version = 4.0.10
+libtool-version = 2.4.6
+lzip-version = 1.20
+m4-version = 1.4.18
+make-version = 4.2.90
+metastore-version = 1.1.2-23-fa9170b
+mpfr-version = 4.0.2
+mpc-version = 1.1.0
+ncurses-version = 6.1
+openblas-version = 0.3.5
+openmpi-version = 4.0.1
+openssl-version = 1.1.1a
+patchelf-version = 0.9
+pkgconfig-version = 0.29.2
+python-version = 3.7.3
+readline-version = 8.0
+sed-version = 4.7
+tar-version = 1.32
+unzip-version = 6.0
+wget-version = 1.20.3
+which-version = 2.21
+xz-version = 5.2.4
+zip-version = 3.0
+zlib-version = 1.2.11
+
+# Special libraries
+# -----------------
+#
+# When updating the version of these libraries, please look into the build
+# rule first: In one way or another, the version string becomes necessary
+# during their build and must be accounted for.
+bzip2-version = 1.0.6
+lapack-version = 3.8.0
+libgit2-version = 0.26.0
+wcslib-version = 6.2
+
+# Python packages
+# ---------------
+#
+# IMPORTANT: Fix url in `reproduce/src/make/dependencies.mk'
+# if changing the version
+asn1crypto-version = 0.24.0
+astroquery-version = 0.3.9
+astropy-version = 3.1.1
+beautifulsoup4-version = 4.7.1
+certifi-version = 2018.11.29
+cffi-version = 1.12.2
+chardet-version = 3.0.4
+cryptography-version = 2.6.1
+cycler-version = 0.10.0
+cython-version = 0.29.6
+entrypoints-version = 0.3
+h5py-version = 2.9.0
+html5lib-version = 1.0.1
+idna-version = 2.8
+jeepney-version = 0.4
+kiwisolver-version = 1.0.1
+keyring-version = 18.0.0
+matplotlib-version = 3.0.2
+mpi4py-version = 3.0.1
+numpy-version = 1.16.2
+pip-version = 19.0.2
+pycparser-version = 2.19
+pyparsing-version = 2.3.1
+pypkgconfig-version = 1.5.1
+python-dateutil-version = 2.8.0
+requests-version = 2.21.0
+scipy-version = 1.2.1
+secretstorage-version = 3.1.1
+setuptools-version = 40.8.0
+setuptools_scm-version = 3.2.0
+six-version = 1.12.0
+soupsieve-version = 1.8
+urllib3-version = 1.24.1
+virtualenv-version = 16.4.0
+webencodings-version = 0.5.1