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Diffstat (limited to 'README')
| -rw-r--r-- | README | 15 |
1 files changed, 8 insertions, 7 deletions
@@ -27,14 +27,15 @@ Running the pipeline 2. Configure the environment (top-level directories in particular) and build all the necessary software for use in the next step. It is - recommended to modify the directories. Please read the comments (lines - starting with an `#') in the file that is opened by `./configure' and - set the directories accordingly. + recommended to modify the directories. Please read the description of + each necessary input clearly and set the best value. Note that the + configure scripts also downloads, builds and locally installs many + programs (pipeline dependencies). So it may take a while to complete. $ ./configure -3. Run the following command to reproduce all the analysis and build the - final `paper.pdf' on 8 threads. If your CPU has a different number of - threads, change the number. +3. Run the following command (local build of Make) to reproduce all the + analysis and build the final `paper.pdf' on *8* threads. If your CPU has + a different number of threads, change the number. - $ .local/bin/make -j8 + $ ./.local/bin/make -j8 |