Described the first analysis phase with a demo subMakefile

Until now, there was no explanation on an actual analysis phase, therefore
with this commit an example scenario with a readable Makefile is included.
The Data lineage graph was also simplified to both be more readable, and
also to correspond to this new explanation and subMakefile.

Some random edits/typos were also corrected and some references added for
discussion.

1 files changed, 59 insertions, 0 deletions

diff --git a/tex/src/references.tex b/tex/src/references.tex
index 2a67584..f4dee1d 100644
--- a/tex/src/references.tex
+++ b/tex/src/references.tex
@@ -12,6 +12,24 @@
 
 
 
+@ARTICLE{konkol20,
+       author = {{Konkol}, Markus and {N{\"u}st}, Daniel and {Goulier}, Laura},
+        title = "{Publishing computational research -- A review of infrastructures for reproducible and transparent scholarly communication}",
+      journal = {arXiv},
+         year = 2020,
+        month = jan,
+        pages = {2001.00484},
+archivePrefix = {arXiv},
+       eprint = {2001.00484},
+ primaryClass = {cs.DL},
+       adsurl = {https://ui.adsabs.harvard.edu/abs/2020arXiv200100484K},
+      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+
+
+
+
 @ARTICLE{infante20,
        author = {{Infante-Sainz}, Ra{\'u}l and {Trujillo}, Ignacio and
          {Rom{\'a}n}, Javier},
@@ -49,6 +67,47 @@ archivePrefix = {arXiv},
 
 
 
+@ARTICLE{miksa19a,
+     author = {Tomasz Miksa and Paul Walk and Peter Neish},
+      title = {RDA DMP Common Standard for Machine-actionable Data Management Plans},
+       year = {2019},
+    journal = {RDA},
+      pages = {doi:10.15497/rda00039},
+        doi = {10.15497/rda00039},
+}
+
+
+
+
+
+@ARTICLE{miksa19b,
+     author = {Tomasz Miksa and Stephanie Simms and Daniel Mietchen and Sarah Jones},
+      title = {Ten principles for machine-actionable data management plans},
+       year = {2019},
+    journal = {PLoS Computational Biology},
+     volume = {15},
+      pages = {e1006750},
+        doi = {10.1371/journal.pcbi.1006750},
+}
+
+
+
+
+
+@ARTICLE{dicosmo19,
+     author = {Roberto {Di Cosmo} and Francois Pellegrini},
+      title = {Encouraging a wider usage of software derived from research},
+       year = {2019},
+    journal = {\doihref{https://www.ouvrirlascience.fr/wp-content/uploads/2020/02/Opportunity-Note_software-derived-from-research_EN.pdf}{Ouvrir la science}},
+     volume = {},
+      pages = {},
+        doi = {},
+}
+
+
+
+
+
 @ARTICLE{perignon19,
      author = {Christophe P\'erignon and Kamel Gadouche and Christophe Hurlin and Roxane Silberman and Eric Debonnel},
       title = {Certify reproducibility with confidential data},