diff options
| author | Boud Roukema <boud@cosmo.torun.pl> | 2020-04-19 15:58:51 +0200 |
|---|---|---|
| committer | Boud Roukema <boud@cosmo.torun.pl> | 2020-04-19 15:58:51 +0200 |
| commit | e682332669b804bdecaf3eddd2521bcfe0eb7241 (patch) | |
| tree | b48e749effb35c4df49a39dbbb0b3222fc969db7 /paper.tex | |
| parent | d4fb323e74aa5065e9ac84e99ed2d26e09c27156 (diff) | |
Clickable URLs for the 19 earlier reproducibility solutions
In this commit, the URLs for the 19 "earlier solutions" at the
beginning of "3 Principles" are recovered from
tex/src/paper-long.tex and put behind the package names
as clickable words.
To reduce the chance that these are interpreted as references,
"Project1 (yyy1), Project2 (yyy1)" is changed to "yyy1: Project1,
Project2". We cannot add full references because of the 8000-word
space constraint.
With a minor word improvement, this commit overall reduces the word
count very slightly, by 9, according to
pdftotext paper.pdf |wc paper.txt
before and after the commit.
Diffstat (limited to 'paper.tex')
| -rw-r--r-- | paper.tex | 2 |
1 files changed, 1 insertions, 1 deletions
@@ -201,7 +201,7 @@ As a consequence, before starting with the technical details it is important to The core principle of Maneage is simple: science is defined by its method, not its result. \citet{buckheit1995} summarize this nicely by noting that modern scientific papers are merely advertisements of a scholarship, the actual scholarship is the coding behind the analysis that ultimately generated the plots/results. -Various solutions have been proposed for this since the early 1990s, for example RED (1992), Apache Taverna (2003), GenePattern (2004), Galaxy (2010), WINGS (2010), Image Processing On Line journal (IPOL, 2011), Active papers (2011), SHARE (2011), Verifiable Computational Result (2011), SOLE (2012), Sciunit (2015), Binder (2017), Popper (2017), WholeTale (2019), and many more. +Many solutions have been proposed for this since the early 1990s, including: 1992: \href{https://sep.stanford.edu/doku.php?id=sep:research:reproducible}{RED}; 2003: \href{https://taverna.incubator.apache.org}{Apache Taverna}; 2004: \href{https://www.genepattern.org}{GenePattern}; 2010: \href{https://galaxyproject.org}{Galaxy}, \href{https://wings-workflows.org}{WINGS}; 2011: \href{https://www.ipol.im}{Image Processing On Line journal} (IPOL), \href{https://www.activepapers.org}{Active papers}, \href{https://is.ieis.tue.nl/staff/pvgorp/share}{SHARE}, \href{https://vcr.stanford.edu}{Verifiable Computational Result}; 2012: \href{https://osf.io/ns2m3}{SOLE}; 2015: \href{https://sciunit.run}{Sciunit}; 2017: \href{https://mybinder.org}{Binder}, \href{https://falsifiable.us}{Popper}; 2019: \href{https://wholetale.org}{WholeTale}. To highlight the uniqueness of Maneage in this plethora of tools, a more elaborate list of principles are required: \begin{enumerate}[label={\bf P\arabic*}] |