diff options
author | Mohammad Akhlaghi <mohammad@akhlaghi.org> | 2019-07-24 14:38:29 +0100 |
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committer | Mohammad Akhlaghi <mohammad@akhlaghi.org> | 2019-07-24 14:38:29 +0100 |
commit | dbf525a90a096931551274f3e2fce49e00d0bf72 (patch) | |
tree | 89f62d3b1519acdca89f419daa2f697832c5037c | |
parent | 9901c3b2db0a3f85105489faa860fc27227ad4ac (diff) |
Temporary software building done in shared memory if available
Until now, the template would unpack the software and build them directly
in the build directory of each project. After installation, the whole
unpacked directory is deleted. However, building the software involves the
reading and writing of millions of files, so on the long run, it can be bad
for the non-volatile memory (HDDs or SSDs), it can also be slightly slow.
To fix this, if the system has a shared-memory directory (commonly named
`/dev/shm'), we can do the temporary building of the software there. The
great thing about this unique directory is that it is actually in the RAM,
not on the HDD/SSD. This can slightly improve the speed (not much
probably), but more importantly it will not do any long-term harm to the
host's HDDs/SSDs.
With this commit, when there is a shared memory directory mounted in
`/dev/shm', and it has enough space (currently set to 2GB), the
`./configure' script will make `.build/software/build-tmp' as a symbolic
link to a fixed directory there. Otherwise, it will just build it as a
directory in the project's shared directory.
The structure has been defined in such a way that we can later easily add
different standard shared-memory locations (for different operating
systems).
This completes task #15336.
-rw-r--r-- | .file-metadata | bin | 6179 -> 6106 bytes | |||
-rwxr-xr-x | configure | 52 |
2 files changed, 46 insertions, 6 deletions
diff --git a/.file-metadata b/.file-metadata Binary files differindex c5db26b..b74b9e0 100644 --- a/.file-metadata +++ b/.file-metadata @@ -640,10 +640,6 @@ if ! [ -d $tardir ]; then mkdir $tardir; fi instdir=$sdir/installed if ! [ -d $instdir ]; then mkdir $instdir; fi -# Temporary software un-packing. -tmpblddir=$sdir/build-tmp -if ! [ -d $tmpblddir ]; then mkdir $tmpblddir; fi - # To record software versions and citation. verdir=$instdir/version-info if ! [ -d $verdir ]; then mkdir $verdir; fi @@ -707,6 +703,47 @@ ln -s $topdir/reproduce/software/config/gnuastro .gnuastro # ------------------------------------------ +# Temporary software un-packing/build directory: if the host has the +# standard `/dev/shm' mounting-point, we'll do it in shared memory (on the +# RAM), to avoid harming/over-using the HDDs/SSDs. The RAM of most systems +# today (>8GB) is large enough for the parallel building of the software. +# +# For the name of the directory under `/dev/shm' (for this project), we'll +# use the names of the two parent directories to the current/running +# directory, separated by a `-' instead of `/'. We'll then appended that +# with the user's name (in case multiple users may be working on similar +# project names). Maybe later, we can use something like `mktemp' to add +# random characters to this name and make it unique to every run (even for +# a single user). +tmpblddir=$sdir/build-tmp +if [ -d /dev/shm ]; then + dirname=$(pwd | sed -e's/\// /g' | awk '{l=NF-1; printf("%s-%s",$l, $NF)}') + tbshmdir=/dev/shm/"$dirname"-$(whoami) +else + tbshmdir="" +fi + +# If a shared memory mounted directory exists and there is enough space +# there (in RAM), build a temporary directory for this project. +use_shm=0 +needed_space=2000000 +if [ x"$tbshmdir" != x ]; then + available_space=$(df $tbshmdir | awk 'NR==2{print $4}') + if [ $available_space -gt $needed_space ]; then + use_shm=1 + if ! [ -d $tbshmdir ]; then mkdir $tbshmdir; fi + fi +fi + +# If no shared memory directory was created, just build the temporary build +# directory under the project build directory. +if [ x$use_shm = x0 ]; then + if ! [ -d $tmpblddir ]; then mkdir $tmpblddir; fi +else + if ! [ -d $tmpblddir ]; then ln -s $tbshmdir $tmpblddir; fi +fi + + @@ -1283,8 +1320,11 @@ fi # --------------------------------- # # By the time the script reaches here the temporary software build -# directory should be empty, so just delete it. -rm -rf $tmpblddir +# directory should be empty, so just delete it. Note `tmpblddir' may be a +# symbolic link to shared memory. So, to work in any scenario, first delete +# the contents of the directory (if it has any), then delete `tmpblddir'. +.local/bin/rm -rf $tmpblddir/* +.local/bin/rm -rf $tmpblddir |