8 files changed, 20 insertions, 13 deletions
diff --git a/tex/delete-me-demo.tex b/tex/src/delete-me-demo.tex
index 65aa1c7..8174bc8 100644
--- a/tex/delete-me-demo.tex
+++ b/tex/src/delete-me-demo.tex
@@ -3,7 +3,7 @@
   %% The displayed WFPC2 image.
   \node[anchor=south west] (img) at (0,0)
        {\includegraphics[width=0.5\linewidth]
-         {\bdir/tex/delete-me-demo/wfpc2.pdf}};
+         {tex/pipeline/delete-me-demo/wfpc2.pdf}};
 
   %% Its label
   \node[anchor=south west] at (0.45\linewidth,0.45\linewidth)
@@ -25,7 +25,7 @@
       ]
     \addplot [const plot mark mid, fill=red]
     table [x index=0, y index=1]
-    {\bdir/tex/delete-me-demo/wfpc2-hist.txt}
+    {tex/pipeline/delete-me-demo/wfpc2-hist.txt}
     \closedcycle;
   \end{axis}
 
diff --git a/tex/delete-me.tex b/tex/src/delete-me.tex
index 32be11c..fc1a1f9 100644
--- a/tex/delete-me.tex
+++ b/tex/src/delete-me.tex
@@ -11,7 +11,7 @@
 
     %% A particular plot.
     \addplot+[scatter, only marks]
-    table {\bdir/tex/delete-me/data.txt};
+    table {tex/pipeline/delete-me/data.txt};
 
   \end{axis}
 \end{tikzpicture}
diff --git a/tex/preamble-biblatex.tex b/tex/src/preamble-biblatex.tex
index b0660a9..bd99502 100644
--- a/tex/preamble-biblatex.tex
+++ b/tex/src/preamble-biblatex.tex
@@ -7,7 +7,7 @@
 %% just be copied there and used.
 %%
 %% USAGE:
-%%  - `tex/references.tex': the file containing Bibtex source of each
+%%  - `tex/src/references.tex': the file containing Bibtex source of each
 %%     reference. The file suffix doesn't have to be `.bib'. This naming
 %%     helps in clearly identifying the files and avoiding places that
 %%     complain about `.bib' files.
@@ -41,7 +41,7 @@
     backend=biber,natbib]{biblatex}
 \DeclareFieldFormat[article]{pages}{#1}
 \DeclareFieldFormat{pages}{\mkfirstpage[{\mkpageprefix[bookpagination]}]{#1}}
-\addbibresource{tex/references.tex}
+\addbibresource{tex/src/references.tex}
 \renewbibmacro{in:}{}
 \renewcommand*{\bibfont}{\footnotesize}
 \DefineBibliographyStrings{english}{references = {References}}
diff --git a/tex/preamble-header.tex b/tex/src/preamble-header.tex
index eb83c27..eb83c27 100644
--- a/tex/preamble-header.tex
+++ b/tex/src/preamble-header.tex
diff --git a/tex/preamble-necessary.tex b/tex/src/preamble-necessary.tex
index bef5a2f..e6ac18e 100644
--- a/tex/preamble-necessary.tex
+++ b/tex/src/preamble-necessary.tex
@@ -1,4 +1,4 @@
-%% Some (commonly) necessary LaTeX packages.
+%% Necessary (independent of style) macros for this project.
 %%
 %% These are a set of packages that have been commonly necessary in most
 %% LaTeX usages. However, if any are not needed in your work, please feel
@@ -8,6 +8,13 @@
 
 
 
+%% Values from the analysis.
+\input{tex/pipeline/macros/pipeline.tex}
+
+
+
+
+
 % Macros for to help in typing, remove them if you don't need them, but
 % this can help as a demo on how you can simply writing of commonly used
 % words that need special formatting (like software names).
diff --git a/tex/preamble-pgfplots.tex b/tex/src/preamble-pgfplots.tex
index 26b98d6..4999656 100644
--- a/tex/preamble-pgfplots.tex
+++ b/tex/src/preamble-pgfplots.tex
@@ -33,12 +33,12 @@
 %%    present in the location LaTeX is run).
 %%
 %%  - Use `\includetikz{XXXX}' to make/use the figure. If a `makepdf' LaTeX
-%%    macro is not defined, then it will simply assume a `XXXX.pdf' file
-%%    exists in the `\bdir/tex/build/tikz' directory and simply import
-%%    it. If `makepdf' is defined, then TiKZ/PGFPlot will be called to
-%%    (possibly) build the plot based on `tex/XXXX.tex'. Note that if the
-%%    contents of `tex/XXXX.tex' hasn't changed since the las
-%%    build. TiKZ/PGFPlots won't rebuild the plot.
+%%    macro is not defined, then \includetikz will assume a `XXXX.pdf' file
+%%    exists in `tex/tikz' and simply import it. If `makepdf' is defined,
+%%    then TiKZ/PGFPlot will be called to (possibly) build the plot based
+%%    on `tex/XXXX.tex'. Note that if the contents of `tex/src/XXXX.tex'
+%%    hasn't changed since the last build. TiKZ/PGFPlots won't rebuild the
+%%    plot.
 
 
 
@@ -69,7 +69,7 @@
 \newcommand{\includetikz}[1]{%
   \ifdefined\makepdf%
     \tikzsetnextfilename{#1}%
-    \input{tex/#1.tex}%
+    \input{tex/src/#1.tex}%
   \else
     \includegraphics[width=\linewidth]{tex/tikz/#1.pdf}
   \fi
diff --git a/tex/preamble-style.tex b/tex/src/preamble-style.tex
index fb08df7..fb08df7 100644
--- a/tex/preamble-style.tex
+++ b/tex/src/preamble-style.tex
diff --git a/tex/references.tex b/tex/src/references.tex
index b3998a2..b3998a2 100644
--- a/tex/references.tex
+++ b/tex/src/references.tex