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authorRaul Infante-Sainz <infantesainz@gmail.com>2019-04-12 07:30:37 +0100
committerRaul Infante-Sainz <infantesainz@gmail.com>2019-04-12 07:30:37 +0100
commit5a8974d1cabd236a1b47909f452be480d0c970bf (patch)
tree6993306433351f3bae968ca339e8e7f1e512fca2 /reproduce
parent7540d7d7b3c57b2442002e46a7e879f31e503752 (diff)
Acknowledged Scipy-related packages: Cython, Matplotlib, Numpy and Scipy
Until now, name and version of all Python packages were indicated in the final paper, but not the main paper of them (if it exists). With this commit, some Python packages (Cython, Matplotlib, Numpy and Scipy) are now properly acknoledged by citating the source paper. `mpi4py' is also cited although this package is not yet included into the pipeline.
Diffstat (limited to 'reproduce')
-rw-r--r--reproduce/src/make/dependencies-python.mk23
1 files changed, 12 insertions, 11 deletions
diff --git a/reproduce/src/make/dependencies-python.mk b/reproduce/src/make/dependencies-python.mk
index a6634ff..221fad2 100644
--- a/reproduce/src/make/dependencies-python.mk
+++ b/reproduce/src/make/dependencies-python.mk
@@ -254,7 +254,7 @@ $(ibidir)/python3: $(tdir)/python-$(python-version).tar.gz \
# 3) Unpacked directory name after unpacking the tarball
# 4) site.cfg file (optional)
# 5) Official software name.(for paper).
-pybuild = cd $(ddir); rm -rf $(3); \
+pybuild = cd $(ddir); rm -rf $(3); \
if ! $(1) $(2); then echo; echo "Tar error"; exit 1; fi; \
cd $(3); \
if [ "x$(strip $(4))" != x ]; then \
@@ -335,8 +335,8 @@ $(ipydir)/cycler: $(tdir)/cycler-$(cycler-version).tar.gz \
$(ipydir)/cython: $(tdir)/cython-$(cython-version).tar.gz \
$(ipydir)/setuptools
- $(call pybuild, tar xf, $<, Cython-$(cython-version), ,\
- Cython $(cython-version))
+ $(call pybuild, tar xf, $<, Cython-$(cython-version)) \
+ && echo "Cython $(cython-version) \citep{cython2011}" > $@
$(ipydir)/entrypoints: $(tdir)/entrypoints-$(entrypoints-version).tar.gz \
$(ipydir)/setuptools
@@ -389,8 +389,8 @@ $(ipydir)/matplotlib: $(tdir)/matplotlib-$(matplotlib-version).tar.gz \
$(ipydir)/numpy \
$(ipydir)/pyparsing \
$(ipydir)/python-dateutil
- $(call pybuild, tar xf, $<, matplotlib-$(matplotlib-version), ,\
- Matplotlib $(matplotlib-version))
+ $(call pybuild, tar xf, $<, matplotlib-$(matplotlib-version)) \
+ && echo "Matplotlib $(matplotlib-version) \citep{matplotlib2007}" > $@
# Currently mpi4py doesn't build because of some conflict with OpenMPI:
#
@@ -404,8 +404,8 @@ $(ipydir)/matplotlib: $(tdir)/matplotlib-$(matplotlib-version).tar.gz \
$(ipydir)/mpi4py: $(tdir)/mpi4py-$(mpi4py-version).tar.gz \
$(ipydir)/setuptools \
$(ilidir)/openmpi
- $(call pybuild, tar xf, $<, mpi4py-$(mpi4py-version), ,\
- mpi4py $(mpi4py-version))
+ $(call pybuild, tar xf, $<, mpi4py-$(mpi4py-version)) \
+ && echo "mpi4py $(mpi4py-version) \citep{mpi4py2011}" > $@
$(ipydir)/numpy: $(tdir)/numpy-$(numpy-version).zip \
$(ipydir)/setuptools \
@@ -418,8 +418,9 @@ $(ipydir)/numpy: $(tdir)/numpy-$(numpy-version).zip \
export LDFLAGS="$(LDFLAGS) -shared"; \
fi; \
conf="$$(pwd)/reproduce/config/pipeline/dependency-numpy-scipy.cfg"; \
- $(call pybuild, unzip, $<, numpy-$(numpy-version),$$conf, \
- Numpy $(numpy-version))
+ $(call pybuild, unzip, $<, numpy-$(numpy-version),$$conf, \
+ Numpy $(numpy-version)) \
+ && echo "Numpy $(numpy-version) \citep{numpy2011}" > $@
$(ibidir)/pip3: $(tdir)/pip-$(pip-version).tar.gz \
$(ipydir)/setuptools
@@ -464,8 +465,8 @@ $(ipydir)/scipy: $(tdir)/scipy-$(scipy-version).tar.gz \
export LDFLAGS="$(LDFLAGS) -shared"; \
fi; \
conf="$$(pwd)/reproduce/config/pipeline/dependency-numpy-scipy.cfg"; \
- $(call pybuild, tar xf, $<, scipy-$(scipy-version),$$conf,\
- Scipy $(scipy-version))
+ $(call pybuild, tar xf, $<, scipy-$(scipy-version),$$conf)       \
+ && echo "Scipy $(scipy-version) \citep{scipy2001}" > $@
$(ipydir)/secretstorage: $(tdir)/secretstorage-$(secretstorage-version).tar.gz \
$(ipydir)/cryptography \