From 5a8974d1cabd236a1b47909f452be480d0c970bf Mon Sep 17 00:00:00 2001
From: Raul Infante-Sainz <infantesainz@gmail.com>
Date: Fri, 12 Apr 2019 07:30:37 +0100
Subject: Acknowledged Scipy-related packages: Cython, Matplotlib, Numpy and
 Scipy

Until now, name and version of all Python packages were indicated in the
final paper, but not the main paper of them (if it exists).

With this commit, some Python packages (Cython, Matplotlib, Numpy and
Scipy) are now properly acknoledged by citating the source paper.
`mpi4py' is also cited although this package is not yet included into
the pipeline.
---
 reproduce/src/make/dependencies-python.mk | 23 ++++++++++++-----------
 1 file changed, 12 insertions(+), 11 deletions(-)

(limited to 'reproduce')

diff --git a/reproduce/src/make/dependencies-python.mk b/reproduce/src/make/dependencies-python.mk
index a6634ff..221fad2 100644
--- a/reproduce/src/make/dependencies-python.mk
+++ b/reproduce/src/make/dependencies-python.mk
@@ -254,7 +254,7 @@ $(ibidir)/python3: $(tdir)/python-$(python-version).tar.gz \
 #   3) Unpacked directory name after unpacking the tarball
 #   4) site.cfg file (optional)
 #   5) Official software name.(for paper).
-pybuild = cd $(ddir); rm -rf $(3);                                \
+pybuild = cd $(ddir); rm -rf $(3);                            \
 	 if ! $(1) $(2); then echo; echo "Tar error"; exit 1; fi; \
 	 cd $(3);                                                 \
 	 if [ "x$(strip $(4))" != x ]; then                       \
@@ -335,8 +335,8 @@ $(ipydir)/cycler: $(tdir)/cycler-$(cycler-version).tar.gz \
 
 $(ipydir)/cython: $(tdir)/cython-$(cython-version).tar.gz \
                   $(ipydir)/setuptools
-	$(call pybuild, tar xf, $<, Cython-$(cython-version), ,\
-	                Cython $(cython-version))
+	$(call pybuild, tar xf, $<, Cython-$(cython-version)) \
+	&& echo "Cython $(cython-version) \citep{cython2011}" > $@
 
 $(ipydir)/entrypoints: $(tdir)/entrypoints-$(entrypoints-version).tar.gz \
                        $(ipydir)/setuptools
@@ -389,8 +389,8 @@ $(ipydir)/matplotlib: $(tdir)/matplotlib-$(matplotlib-version).tar.gz   \
                       $(ipydir)/numpy                                   \
                       $(ipydir)/pyparsing                               \
                       $(ipydir)/python-dateutil
-	$(call pybuild, tar xf, $<, matplotlib-$(matplotlib-version), ,\
-	                Matplotlib $(matplotlib-version))
+	$(call pybuild, tar xf, $<, matplotlib-$(matplotlib-version))       \
+	&& echo "Matplotlib $(matplotlib-version) \citep{matplotlib2007}" > $@
 
 # Currently mpi4py doesn't build because of some conflict with OpenMPI:
 #
@@ -404,8 +404,8 @@ $(ipydir)/matplotlib: $(tdir)/matplotlib-$(matplotlib-version).tar.gz   \
 $(ipydir)/mpi4py: $(tdir)/mpi4py-$(mpi4py-version).tar.gz    \
                   $(ipydir)/setuptools                       \
                   $(ilidir)/openmpi
-	$(call pybuild, tar xf, $<, mpi4py-$(mpi4py-version), ,\
-	                mpi4py $(mpi4py-version))
+	$(call pybuild, tar xf, $<, mpi4py-$(mpi4py-version))    \
+	&& echo "mpi4py $(mpi4py-version) \citep{mpi4py2011}" > $@
 
 $(ipydir)/numpy: $(tdir)/numpy-$(numpy-version).zip \
                  $(ipydir)/setuptools               \
@@ -418,8 +418,9 @@ $(ipydir)/numpy: $(tdir)/numpy-$(numpy-version).zip \
 	  export LDFLAGS="$(LDFLAGS) -shared";                               \
 	fi;                                                                  \
 	conf="$$(pwd)/reproduce/config/pipeline/dependency-numpy-scipy.cfg"; \
-	$(call pybuild, unzip, $<, numpy-$(numpy-version),$$conf, \
-	                Numpy $(numpy-version))
+	$(call pybuild, unzip, $<, numpy-$(numpy-version),$$conf,            \
+	                Numpy $(numpy-version))                              \
+	&& echo "Numpy $(numpy-version) \citep{numpy2011}" > $@
 
 $(ibidir)/pip3: $(tdir)/pip-$(pip-version).tar.gz \
                 $(ipydir)/setuptools
@@ -464,8 +465,8 @@ $(ipydir)/scipy: $(tdir)/scipy-$(scipy-version).tar.gz \
 	  export LDFLAGS="$(LDFLAGS) -shared";                               \
 	fi;                                                                  \
 	conf="$$(pwd)/reproduce/config/pipeline/dependency-numpy-scipy.cfg"; \
-	$(call pybuild, tar xf, $<, scipy-$(scipy-version),$$conf,\
-	                Scipy $(scipy-version))
+	$(call pybuild, tar xf, $<, scipy-$(scipy-version),$$conf)           \
+	&& echo "Scipy $(scipy-version) \citep{scipy2001}" > $@
 
 $(ipydir)/secretstorage: $(tdir)/secretstorage-$(secretstorage-version).tar.gz \
                          $(ipydir)/cryptography                                \
-- 
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