diff options
| -rwxr-xr-x | configure | 50 | ||||
| -rw-r--r-- | reproduce/analysis/make/paper.mk | 2 | ||||
| -rw-r--r-- | reproduce/analysis/make/top.mk | 16 | ||||
| -rw-r--r-- | reproduce/software/config/installation/texlive.mk | 4 | ||||
| -rw-r--r-- | reproduce/software/make/basic.mk | 758 | ||||
| -rw-r--r-- | reproduce/software/make/build-rules.mk | 105 | ||||
| -rw-r--r-- | reproduce/software/make/high-level.mk | 386 | ||||
| -rw-r--r-- | reproduce/software/make/python.mk | 266 |
8 files changed, 795 insertions, 792 deletions
@@ -519,10 +519,10 @@ if [ $rewritepconfig = yes ]; then create_file_with_notice $pconf # Write the values. - sed -e's|@bdir[@]|'"$bdir"'|' \ - -e's|@indir[@]|'"$indir"'|' \ - -e's|@ddir[@]|'"$ddir"'|' \ - -e's|@downloader[@]|'"$downloader"'|' \ + sed -e's|@bdir[@]|'"$bdir"'|' \ + -e's|@indir[@]|'"$indir"'|' \ + -e's|@ddir[@]|'"$ddir"'|' \ + -e's|@downloader[@]|'"$downloader"'|' \ -e's|@groupname[@]|'"$reproducible_paper_group_name"'|' \ $pconf.in >> $pconf else @@ -959,12 +959,12 @@ fi # Bash, Make, or AWK. In this step, we'll install such low-level basic # tools, but we have to be very portable (and use minimal features in all). make -f reproduce/software/make/basic.mk \ - rpath_command=$rpath_command \ - static_build=$static_build \ - needs_ldl=$needs_ldl \ - on_mac_os=$on_mac_os \ - numthreads=$numthreads \ - host_cc=$host_cc \ + rpath_command=$rpath_command \ + static_build=$static_build \ + needs_ldl=$needs_ldl \ + on_mac_os=$on_mac_os \ + numthreads=$numthreads \ + host_cc=$host_cc \ -j$numthreads @@ -984,10 +984,10 @@ else numthreads=$jobs fi ./.local/bin/make -f reproduce/software/make/high-level.mk \ - rpath_command=$rpath_command \ - static_build=$static_build \ - on_mac_os=$on_mac_os \ - numthreads=$numthreads \ + rpath_command=$rpath_command \ + static_build=$static_build \ + on_mac_os=$on_mac_os \ + numthreads=$numthreads \ -j$numthreads @@ -1057,22 +1057,22 @@ function prepare_name_version() { # Count how many names there are. This is necessary to identify the # last element. - num=$(.local/bin/cat $@ \ + num=$(.local/bin/cat $@ \ | .local/bin/sed '/^\s*$/d' \ | .local/bin/wc -l) # Put them all in one paragraph. - .local/bin/cat $@ \ - | .local/bin/sort \ - | .local/bin/awk 'NF>0 { \ - c++; \ - if(c==1) \ - { \ - if('$num'==1) printf("%s", $0); \ - else printf("%s", $0); \ - } \ + .local/bin/cat $@ \ + | .local/bin/sort \ + | .local/bin/awk 'NF>0 { \ + c++; \ + if(c==1) \ + { \ + if('$num'==1) printf("%s", $0); \ + else printf("%s", $0); \ + } \ else if(c=='$num') printf(" and %s\n", $0); \ - else printf(", %s", $0) \ + else printf(", %s", $0) \ }' fi } diff --git a/reproduce/analysis/make/paper.mk b/reproduce/analysis/make/paper.mk index 549b7c0..c1d5b33 100644 --- a/reproduce/analysis/make/paper.mk +++ b/reproduce/analysis/make/paper.mk @@ -118,7 +118,7 @@ $(texbdir)/paper.bbl: tex/src/references.tex $(mtexdir)/dependencies-bib.tex \ # to run everything cleanly from there, it is necessary to add the current # directory (top project directory) to the `TEXINPUTS' environment # variable. -paper.pdf: $(mtexdir)/project.tex paper.tex $(texbdir)/paper.bbl \ +paper.pdf: $(mtexdir)/project.tex paper.tex $(texbdir)/paper.bbl \ | $(tikzdir) $(texbdir) # If `$(mtexdir)/project.tex' is empty, don't build the PDF. diff --git a/reproduce/analysis/make/top.mk b/reproduce/analysis/make/top.mk index a85c530..b753979 100644 --- a/reproduce/analysis/make/top.mk +++ b/reproduce/analysis/make/top.mk @@ -68,12 +68,12 @@ ifeq (x$(reproducible_paper_group_name),x$(GROUP-NAME)) all: paper.pdf else all: - @if [ "x$(GROUP-NAME)" = x ]; then \ + @if [ "x$(GROUP-NAME)" = x ]; then \ echo "Project is NOT configured for groups, please run"; \ - echo " $$ .local/bin/make"; \ - else \ - echo "Project is configured for groups, please run"; \ - echo " $$ ./for-group $(GROUP-NAME) make -j8"; \ + echo " $$ .local/bin/make"; \ + else \ + echo "Project is configured for groups, please run"; \ + echo " $$ ./for-group $(GROUP-NAME) make -j8"; \ fi endif @@ -110,9 +110,9 @@ endif # a `foreach' loop in the next step to explicitly request loading them in # the same order that they are defined here (we aren't just using a # wild-card like the configuration Makefiles). -makesrc = initialize \ - download \ - delete-me \ +makesrc = initialize \ + download \ + delete-me \ paper diff --git a/reproduce/software/config/installation/texlive.mk b/reproduce/software/config/installation/texlive.mk index 0acf5ab..b3e1235 100644 --- a/reproduce/software/config/installation/texlive.mk +++ b/reproduce/software/config/installation/texlive.mk @@ -17,6 +17,6 @@ # ignored in the `tlmgr install' command, but will be used later when we # want their versions. texlive-packages = tex fancyhdr ec newtx fontaxes xkeyval etoolbox xcolor \ - setspace caption footmisc datetime fmtcount titlesec \ - preprint ulem biblatex biber logreq pgf pgfplots fp \ + setspace caption footmisc datetime fmtcount titlesec \ + preprint ulem biblatex biber logreq pgf pgfplots fp \ courier tex-gyre txfonts times diff --git a/reproduce/software/make/basic.mk b/reproduce/software/make/basic.mk index f210d79..f2442ff 100644 --- a/reproduce/software/make/basic.mk +++ b/reproduce/software/make/basic.mk @@ -90,117 +90,117 @@ all: $(foreach p, $(top-level-programs), $(ibidir)/$(p)) # its easier to just keep a with the others. $(lockdir): | $(BDIR); mkdir $@ downloadwrapper = ./reproduce/analysis/bash/download-multi-try -tarballs = $(foreach t, bash-$(bash-version).tar.lz \ - binutils-$(binutils-version).tar.lz \ - bzip2-$(bzip2-version).tar.gz \ - cert.pem \ - coreutils-$(coreutils-version).tar.xz \ - curl-$(curl-version).tar.gz \ - diffutils-$(diffutils-version).tar.xz \ - file-$(file-version).tar.gz \ - findutils-$(findutils-version).tar.lz \ - gawk-$(gawk-version).tar.lz \ - gcc-$(gcc-version).tar.xz \ - git-$(git-version).tar.xz \ - gmp-$(gmp-version).tar.lz \ - grep-$(grep-version).tar.xz \ - gzip-$(gzip-version).tar.gz \ - isl-$(isl-version).tar.bz2 \ - libbsd-$(libbsd-version).tar.xz \ - libtool-$(libtool-version).tar.xz \ - lzip-$(lzip-version).tar.gz \ - m4-$(m4-version).tar.gz \ - make-$(make-version).tar.lz \ - metastore-$(metastore-version).tar.gz \ - mpfr-$(mpfr-version).tar.xz \ - mpc-$(mpc-version).tar.gz \ - ncurses-$(ncurses-version).tar.gz \ - openssl-$(openssl-version).tar.gz \ - patchelf-$(patchelf-version).tar.gz \ - pkg-config-$(pkgconfig-version).tar.gz \ - readline-$(readline-version).tar.gz \ - sed-$(sed-version).tar.xz \ - tar-$(tar-version).tar.gz \ - unzip-$(unzip-version).tar.gz \ - wget-$(wget-version).tar.lz \ - which-$(which-version).tar.gz \ - xz-$(xz-version).tar.gz \ - zip-$(zip-version).tar.gz \ - zlib-$(zlib-version).tar.gz \ +tarballs = $(foreach t, bash-$(bash-version).tar.lz \ + binutils-$(binutils-version).tar.lz \ + bzip2-$(bzip2-version).tar.gz \ + cert.pem \ + coreutils-$(coreutils-version).tar.xz \ + curl-$(curl-version).tar.gz \ + diffutils-$(diffutils-version).tar.xz \ + file-$(file-version).tar.gz \ + findutils-$(findutils-version).tar.lz \ + gawk-$(gawk-version).tar.lz \ + gcc-$(gcc-version).tar.xz \ + git-$(git-version).tar.xz \ + gmp-$(gmp-version).tar.lz \ + grep-$(grep-version).tar.xz \ + gzip-$(gzip-version).tar.gz \ + isl-$(isl-version).tar.bz2 \ + libbsd-$(libbsd-version).tar.xz \ + libtool-$(libtool-version).tar.xz \ + lzip-$(lzip-version).tar.gz \ + m4-$(m4-version).tar.gz \ + make-$(make-version).tar.lz \ + metastore-$(metastore-version).tar.gz \ + mpfr-$(mpfr-version).tar.xz \ + mpc-$(mpc-version).tar.gz \ + ncurses-$(ncurses-version).tar.gz \ + openssl-$(openssl-version).tar.gz \ + patchelf-$(patchelf-version).tar.gz \ + pkg-config-$(pkgconfig-version).tar.gz \ + readline-$(readline-version).tar.gz \ + sed-$(sed-version).tar.xz \ + tar-$(tar-version).tar.gz \ + unzip-$(unzip-version).tar.gz \ + wget-$(wget-version).tar.lz \ + which-$(which-version).tar.gz \ + xz-$(xz-version).tar.gz \ + zip-$(zip-version).tar.gz \ + zlib-$(zlib-version).tar.gz \ , $(tdir)/$(t) ) $(tarballs): $(tdir)/%: | $(lockdir) - if [ -f $(DEPENDENCIES-DIR)/$* ]; then \ - cp $(DEPENDENCIES-DIR)/$* $@; \ - else \ - n=$$(echo $* | sed -e's/[0-9\-]/ /g' \ - -e's/\./ /g' \ - | awk '{print $$1}' ); \ - \ - mergenames=1; \ - if [ $$n = bash ]; then w=http://akhlaghi.org/src; \ + if [ -f $(DEPENDENCIES-DIR)/$* ]; then \ + cp $(DEPENDENCIES-DIR)/$* $@; \ + else \ + n=$$(echo $* | sed -e's/[0-9\-]/ /g' \ + -e's/\./ /g' \ + | awk '{print $$1}' ); \ + \ + mergenames=1; \ + if [ $$n = bash ]; then w=http://akhlaghi.org/src; \ elif [ $$n = binutils ]; then w=http://ftp.gnu.org/gnu/binutils; \ - elif [ $$n = bzip ]; then w=http://akhlaghi.org/src; \ - elif [ $$n = cert ]; then w=http://akhlaghi.org/src; \ + elif [ $$n = bzip ]; then w=http://akhlaghi.org/src; \ + elif [ $$n = cert ]; then w=http://akhlaghi.org/src; \ elif [ $$n = coreutils ]; then w=http://ftp.gnu.org/gnu/coreutils;\ - elif [ $$n = curl ]; then w=https://curl.haxx.se/download; \ + elif [ $$n = curl ]; then w=https://curl.haxx.se/download; \ elif [ $$n = diffutils ]; then w=http://ftp.gnu.org/gnu/diffutils;\ - elif [ $$n = file ]; then w=ftp://ftp.astron.com/pub/file; \ - elif [ $$n = findutils ]; then w=http://akhlaghi.org/src; \ - elif [ $$n = gawk ]; then w=http://ftp.gnu.org/gnu/gawk; \ + elif [ $$n = file ]; then w=ftp://ftp.astron.com/pub/file; \ + elif [ $$n = findutils ]; then w=http://akhlaghi.org/src; \ + elif [ $$n = gawk ]; then w=http://ftp.gnu.org/gnu/gawk; \ elif [ $$n = gcc ]; then w=http://ftp.gnu.org/gnu/gcc/gcc-$(gcc-version); \ elif [ $$n = git ]; then w=http://mirrors.edge.kernel.org/pub/software/scm/git; \ elif [ $$n = gmp ]; then w=https://gmplib.org/download/gmp; \ - elif [ $$n = grep ]; then w=http://ftp.gnu.org/gnu/grep; \ - elif [ $$n = gzip ]; then w=http://ftp.gnu.org/gnu/gzip; \ + elif [ $$n = grep ]; then w=http://ftp.gnu.org/gnu/grep; \ + elif [ $$n = gzip ]; then w=http://ftp.gnu.org/gnu/gzip; \ elif [ $$n = isl ]; then w=ftp://gcc.gnu.org/pub/gcc/infrastructure; \ elif [ $$n = libbsd ]; then w=http://libbsd.freedesktop.org/releases; \ - elif [ $$n = libtool ]; then w=http://ftp.gnu.org/gnu/libtool; \ + elif [ $$n = libtool ]; then w=http://ftp.gnu.org/gnu/libtool; \ elif [ $$n = lzip ]; then w=http://download.savannah.gnu.org/releases/lzip; \ - elif [ $$n = m ]; then \ - mergenames=0; \ - w=http://akhlaghi.org/src/m4-1.4.18-patched.tar.gz; \ - elif [ $$n = make ]; then w=http://akhlaghi.org/src; \ - elif [ $$n = metastore ]; then w=http://akhlaghi.org/src; \ + elif [ $$n = m ]; then \ + mergenames=0; \ + w=http://akhlaghi.org/src/m4-1.4.18-patched.tar.gz; \ + elif [ $$n = make ]; then w=http://akhlaghi.org/src; \ + elif [ $$n = metastore ]; then w=http://akhlaghi.org/src; \ elif [ $$n = mpfr ]; then w=http://www.mpfr.org/mpfr-current;\ - elif [ $$n = mpc ]; then w=http://ftp.gnu.org/gnu/mpc; \ - elif [ $$n = ncurses ]; then w=http://ftp.gnu.org/gnu/ncurses; \ - elif [ $$n = openssl ]; then w=http://www.openssl.org/source; \ + elif [ $$n = mpc ]; then w=http://ftp.gnu.org/gnu/mpc; \ + elif [ $$n = ncurses ]; then w=http://ftp.gnu.org/gnu/ncurses; \ + elif [ $$n = openssl ]; then w=http://www.openssl.org/source; \ elif [ $$n = patchelf ]; then w=http://nixos.org/releases/patchelf/patchelf-$(patchelf-version); \ elif [ $$n = pkg ]; then w=http://pkg-config.freedesktop.org/releases; \ elif [ $$n = readline ]; then w=http://ftp.gnu.org/gnu/readline; \ - elif [ $$n = sed ]; then w=http://ftp.gnu.org/gnu/sed; \ - elif [ $$n = tar ]; then w=http://ftp.gnu.org/gnu/tar; \ - elif [ $$n = unzip ]; then \ - mergenames=0; v=$$(echo $(unzip-version) | sed -e's/\.//'); \ - w=ftp://ftp.info-zip.org/pub/infozip/src/unzip$$v.tgz; \ - elif [ $$n = wget ]; then w=http://ftp.gnu.org/gnu/wget; \ - elif [ $$n = which ]; then w=http://ftp.gnu.org/gnu/which; \ - elif [ $$n = xz ]; then w=http://tukaani.org/xz; \ - elif [ $$n = zip ]; then \ - mergenames=0; v=$$(echo $(zip-version) | sed -e's/\.//'); \ - w=ftp://ftp.info-zip.org/pub/infozip/src/zip$$v.tgz; \ - elif [ $$n = zlib ]; then w=http://www.zlib.net; \ - else \ - echo; echo; echo; \ - echo "'$$n' not a basic dependency name (for downloading)." \ - echo; echo; echo; \ - exit 1; \ - fi; \ - \ - if [ $$mergenames = 1 ]; then tarballurl=$$w/"$*"; \ - else tarballurl=$$w; \ - fi; \ - \ - echo "Downloading $$tarballurl"; \ - if [ -f $(ibdir)/wget ]; then \ - downloader="wget --no-use-server-timestamps -O"; \ - else \ - downloader="$(DOWNLOADER)"; \ - fi; \ - \ - touch $(lockdir)/download; \ - $(downloadwrapper) "$$downloader" $(lockdir)/download \ - $$tarballurl $@; \ + elif [ $$n = sed ]; then w=http://ftp.gnu.org/gnu/sed; \ + elif [ $$n = tar ]; then w=http://ftp.gnu.org/gnu/tar; \ + elif [ $$n = unzip ]; then \ + mergenames=0; v=$$(echo $(unzip-version) | sed -e's/\.//'); \ + w=ftp://ftp.info-zip.org/pub/infozip/src/unzip$$v.tgz; \ + elif [ $$n = wget ]; then w=http://ftp.gnu.org/gnu/wget; \ + elif [ $$n = which ]; then w=http://ftp.gnu.org/gnu/which; \ + elif [ $$n = xz ]; then w=http://tukaani.org/xz; \ + elif [ $$n = zip ]; then \ + mergenames=0; v=$$(echo $(zip-version) | sed -e's/\.//'); \ + w=ftp://ftp.info-zip.org/pub/infozip/src/zip$$v.tgz; \ + elif [ $$n = zlib ]; then w=http://www.zlib.net; \ + else \ + echo; echo; echo; \ + echo "'$$n' not a basic dependency name (for downloading)." \ + echo; echo; echo; \ + exit 1; \ + fi; \ + \ + if [ $$mergenames = 1 ]; then tarballurl=$$w/"$*"; \ + else tarballurl=$$w; \ + fi; \ + \ + echo "Downloading $$tarballurl"; \ + if [ -f $(ibdir)/wget ]; then \ + downloader="wget --no-use-server-timestamps -O"; \ + else \ + downloader="$(DOWNLOADER)"; \ + fi; \ + \ + touch $(lockdir)/download; \ + $(downloadwrapper) "$$downloader" $(lockdir)/download \ + $$tarballurl $@; \ fi @@ -221,20 +221,22 @@ $(tarballs): $(tdir)/%: | $(lockdir) # is very annoying and can cause many complications. We thus remove any # part of PATH of that has `ccache' in it before making symbolic links to # the programs we are not building ourselves. -makelink = origpath="$$PATH"; \ - export PATH=$$(echo $(syspath) | tr : '\n' | grep -v ccache \ - | tr '\n' :); \ - a=$$(which $(1) 2> /dev/null); \ - if [ -e $(ibdir)/$(1) ]; then rm $(ibdir)/$(1); fi; \ - if [ x$$a = x ]; then \ - if [ "x$(strip $(2))" = xmandatory ]; then \ - echo "'$(1)' is necessary for higher-level tools."; \ +makelink = origpath="$$PATH"; \ + export PATH=$$(echo $(syspath) \ + | tr : '\n' \ + | grep -v ccache \ + | tr '\n' :); \ + a=$$(which $(1) 2> /dev/null); \ + if [ -e $(ibdir)/$(1) ]; then rm $(ibdir)/$(1); fi; \ + if [ x$$a = x ]; then \ + if [ "x$(strip $(2))" = xmandatory ]; then \ + echo "'$(1)' is necessary for higher-level tools."; \ echo "Please install it for the configuration to continue."; \ - exit 1; \ - fi; \ - else \ - ln -s $$a $(ibdir)/$(1); \ - fi; \ + exit 1; \ + fi; \ + else \ + ln -s $$a $(ibdir)/$(1); \ + fi; \ export PATH="$$origpath" $(ibdir) $(ildir):; mkdir $@ $(ibidir)/low-level-links: | $(ibdir) $(ildir) @@ -264,11 +266,11 @@ $(ibidir)/low-level-links: | $(ibdir) $(ildir) # Necessary libraries: # Libdl (for dynamic loading libraries at runtime) # POSIX Threads library for multi-threaded programs. - for l in dl pthread; do \ - rm -f $(ildir)/lib$$l*; \ - if [ -f /usr/lib/lib$$l.a ]; then \ - ln -s /usr/lib/lib$$l.* $(ildir)/; \ - fi; \ + for l in dl pthread; do \ + rm -f $(ildir)/lib$$l*; \ + if [ -f /usr/lib/lib$$l.a ]; then \ + ln -s /usr/lib/lib$$l.* $(ildir)/; \ + fi; \ done # We want this to be empty (so it doesn't interefere with the other @@ -319,48 +321,48 @@ $(ibidir)/bzip2: $(tdir)/bzip2-$(bzip2-version).tar.gz # # NOTE: the major version number appears in the final symbolic # link. - tdir=bzip2-$(bzip2-version); \ - if [ $(static_build) = yes ]; then \ - makecommand="make LDFLAGS=-static"; \ - makeshared="echo no-shared"; \ - else \ - makecommand="make"; \ - if [ x$(on_mac_os) = xyes ]; then \ - makeshared="echo no-shared"; \ - else \ - makeshared="make -f Makefile-libbz2_so"; \ - fi; \ - fi; \ - cd $(ddir) && rm -rf $$tdir && tar xf $< && cd $$tdir \ - && sed -e 's@\(ln -s -f \)$$(PREFIX)/bin/@\1@' Makefile \ - > Makefile.sed \ - && mv Makefile.sed Makefile \ - && $$makeshared \ - && cp -a libbz2* $(ildir)/ \ - && make clean \ - && $$makecommand \ - && make install PREFIX=$(idir) \ - && cd .. \ - && rm -rf $$tdir \ - && cd $(ildir) \ - && ln -fs libbz2.so.1.0 libbz2.so \ + tdir=bzip2-$(bzip2-version); \ + if [ $(static_build) = yes ]; then \ + makecommand="make LDFLAGS=-static"; \ + makeshared="echo no-shared"; \ + else \ + makecommand="make"; \ + if [ x$(on_mac_os) = xyes ]; then \ + makeshared="echo no-shared"; \ + else \ + makeshared="make -f Makefile-libbz2_so"; \ + fi; \ + fi; \ + cd $(ddir) && rm -rf $$tdir && tar xf $< && cd $$tdir \ + && sed -e 's@\(ln -s -f \)$$(PREFIX)/bin/@\1@' Makefile \ + > Makefile.sed \ + && mv Makefile.sed Makefile \ + && $$makeshared \ + && cp -a libbz2* $(ildir)/ \ + && make clean \ + && $$makecommand \ + && make install PREFIX=$(idir) \ + && cd .. \ + && rm -rf $$tdir \ + && cd $(ildir) \ + && ln -fs libbz2.so.1.0 libbz2.so \ && echo "Bzip2 $(bzip2-version)" > $@ $(ibidir)/unzip: $(tdir)/unzip-$(unzip-version).tar.gz - v=$$(echo $(unzip-version) | sed -e's/\.//'); \ - $(call gbuild, $<, unzip$$v, static,, \ - -f unix/Makefile generic_gcc \ - CFLAGS="-DBIG_MEM -DMMAP",,pwd, \ - -f unix/Makefile \ + v=$$(echo $(unzip-version) | sed -e's/\.//'); \ + $(call gbuild, $<, unzip$$v, static,, \ + -f unix/Makefile generic_gcc \ + CFLAGS="-DBIG_MEM -DMMAP",,pwd, \ + -f unix/Makefile \ BINDIR=$(ibdir) MANDIR=$(idir)/man/man1 ) \ && echo "Unzip $(unzip-version)" > $@ $(ibidir)/zip: $(tdir)/zip-$(zip-version).tar.gz - v=$$(echo $(zip-version) | sed -e's/\.//'); \ - $(call gbuild, $<, zip$$v, static,, \ - -f unix/Makefile generic_gcc \ - CFLAGS="-DBIG_MEM -DMMAP",,pwd, \ - -f unix/Makefile \ + v=$$(echo $(zip-version) | sed -e's/\.//'); \ + $(call gbuild, $<, zip$$v, static,, \ + -f unix/Makefile generic_gcc \ + CFLAGS="-DBIG_MEM -DMMAP",,pwd, \ + -f unix/Makefile \ BINDIR=$(ibdir) MANDIR=$(idir)/man/man1 ) \ && echo "Zip $(zip-version)" > $@ @@ -379,12 +381,12 @@ $(ibidir)/zlib: $(tdir)/zlib-$(zlib-version).tar.gz # Tar to be the last compression-related software (the first-set of # software to be built). $(ibidir)/tar: $(tdir)/tar-$(tar-version).tar.gz \ - $(ibidir)/bzip2 \ - $(ibidir)/unzip \ - $(ibidir)/gzip \ - $(ibidir)/lzip \ - $(ibidir)/zlib \ - $(ibidir)/zip \ + $(ibidir)/bzip2 \ + $(ibidir)/unzip \ + $(ibidir)/gzip \ + $(ibidir)/lzip \ + $(ibidir)/zlib \ + $(ibidir)/zip \ $(ibidir)/xz # Since all later programs depend on Tar, the configuration will be # stuck here, only making Tar. So its more efficient to built it on @@ -434,9 +436,9 @@ $(ibidir)/ncurses: $(tdir)/ncurses-$(ncurses-version).tar.gz \ rm -f $(ibdir)/bash* $(ibdir)/awk* $(ibdir)/gawk* # Standard build process. - $(call gbuild, $<, ncurses-$(ncurses-version), static, \ - --with-shared --enable-rpath --without-normal \ - --without-debug --with-cxx-binding \ + $(call gbuild, $<, ncurses-$(ncurses-version), static, \ + --with-shared --enable-rpath --without-normal \ + --without-debug --with-cxx-binding \ --with-cxx-shared --enable-widec --enable-pc-files \ --with-pkg-config=$(ildir)/pkgconfig, -j$(numthreads)) @@ -477,39 +479,39 @@ $(ibidir)/ncurses: $(tdir)/ncurses-$(ncurses-version).tar.gz \ # # 5. A link is made to also be able to include files from the # `ncurses' headers. - if [ x$(on_mac_os) = xyes ]; then so="dylib"; else so="so"; fi; \ - if [ -f $(ildir)/libncursesw.$$so ]; then \ - \ - sov=$$(ls -l $(ildir)/libncursesw* \ - | awk '/^-/{print $$NF}' \ - | sed -e's|'$(ildir)/libncursesw.'||'); \ - \ - cd "$(ildir)"; \ - for lib in ncurses ncurses++ form panel menu; do \ - ln -fs lib$$lib"w".$$sov lib$$lib.$$so; \ - ln -fs $(ildir)/pkgconfig/"$$lib"w.pc pkgconfig/$$lib.pc; \ - done; \ - for lib in tic tinfo; do \ - ln -fs libncursesw.$$sov lib$$lib.$$so; \ - ln -fs libncursesw.$$sov lib$$lib.$$sov; \ - ln -fs $(ildir)/pkgconfig/ncursesw.pc pkgconfig/$$lib.pc; \ - done; \ - ln -fs libncursesw.$$sov libcurses.$$so; \ - ln -fs libncursesw.$$sov libcursesw.$$sov; \ - ln -fs $(ildir)/pkgconfig/ncursesw.pc pkgconfig/curses.pc; \ - ln -fs $(ildir)/pkgconfig/ncursesw.pc pkgconfig/cursesw.pc; \ - \ - ln -fs $(idir)/include/ncursesw $(idir)/include/ncurses; \ - echo "GNU NCURSES $(ncurses-version)" > $@; \ - else \ - exit 1; \ + if [ x$(on_mac_os) = xyes ]; then so="dylib"; else so="so"; fi; \ + if [ -f $(ildir)/libncursesw.$$so ]; then \ + \ + sov=$$(ls -l $(ildir)/libncursesw* \ + | awk '/^-/{print $$NF}' \ + | sed -e's|'$(ildir)/libncursesw.'||'); \ + \ + cd "$(ildir)"; \ + for lib in ncurses ncurses++ form panel menu; do \ + ln -fs lib$$lib"w".$$sov lib$$lib.$$so; \ + ln -fs $(ildir)/pkgconfig/"$$lib"w.pc pkgconfig/$$lib.pc; \ + done; \ + for lib in tic tinfo; do \ + ln -fs libncursesw.$$sov lib$$lib.$$so; \ + ln -fs libncursesw.$$sov lib$$lib.$$sov; \ + ln -fs $(ildir)/pkgconfig/ncursesw.pc pkgconfig/$$lib.pc; \ + done; \ + ln -fs libncursesw.$$sov libcurses.$$so; \ + ln -fs libncursesw.$$sov libcursesw.$$sov; \ + ln -fs $(ildir)/pkgconfig/ncursesw.pc pkgconfig/curses.pc; \ + ln -fs $(ildir)/pkgconfig/ncursesw.pc pkgconfig/cursesw.pc; \ + \ + ln -fs $(idir)/include/ncursesw $(idir)/include/ncurses; \ + echo "GNU NCURSES $(ncurses-version)" > $@; \ + else \ + exit 1; \ fi -$(ibidir)/readline: $(tdir)/readline-$(readline-version).tar.gz \ +$(ibidir)/readline: $(tdir)/readline-$(readline-version).tar.gz \ $(ibidir)/ncurses - $(call gbuild, $<, readline-$(readline-version), static, \ - --with-curses --disable-install-examples, \ - SHLIB_LIBS="-lncursesw" -j$(numthreads)) \ + $(call gbuild, $<, readline-$(readline-version), static, \ + --with-curses --disable-install-examples, \ + SHLIB_LIBS="-lncursesw" -j$(numthreads)) \ && echo "GNU Readline $(readline-version)" > $@ $(ibidir)/patchelf: $(tdir)/patchelf-$(patchelf-version).tar.gz \ @@ -577,9 +579,9 @@ $(ibidir)/bash: $(tdir)/bash-$(bash-version).tar.lz \ # you disable them all with `--enable-minimal-config' and enable a # subset using the `--enable' options. if [ "x$(static_build)" = xyes ]; then stopt="--enable-static-link";\ - else stopt=""; \ - fi; \ - $(call gbuild, $<, bash-$(bash-version),, \ + else stopt=""; \ + fi; \ + $(call gbuild, $<, bash-$(bash-version),, \ --with-installed-readline=$(ildir) $$stopt, \ -j$(numthreads)) @@ -587,8 +589,8 @@ $(ibidir)/bash: $(tdir)/bash-$(bash-version).tar.lz \ # default. So, we have to manually include it, currently we are # only doing this on GNU/Linux systems (using the `patchelf' # program). - if [ "x$(needpatchelf)" != x ]; then \ - if [ -f $(ibdir)/bash ]; then \ + if [ "x$(needpatchelf)" != x ]; then \ + if [ -f $(ibdir)/bash ]; then \ $(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/bash; fi \ fi @@ -600,10 +602,10 @@ $(ibidir)/bash: $(tdir)/bash-$(bash-version).tar.lz \ # Just to be sure that the installation step above went well, # before making the link, we'll see if the file actually exists # there. - if [ -f $(ibdir)/bash ]; then \ - ln -fs $(ibdir)/bash $(ibdir)/sh; \ - echo "GNU Bash $(bash-version)" > $@; \ - else \ + if [ -f $(ibdir)/bash ]; then \ + ln -fs $(ibdir)/bash $(ibdir)/sh; \ + echo "GNU Bash $(bash-version)" > $@; \ + else \ echo "GNU Bash not built!"; exit 1; fi @@ -624,23 +626,23 @@ $(ibidir)/bash: $(tdir)/bash-$(bash-version).tar.lz \ # this project is avoid dependency on the host as much as possible. $(ibidir)/curl: $(tdir)/curl-$(curl-version).tar.gz \ $(ibidir)/openssl - $(call gbuild, $<, curl-$(curl-version), , \ - LIBS="-pthread" \ - --with-zlib=$(ildir) \ - --with-ssl=$(idir) \ - --without-mesalink \ - --with-ca-fallback \ - --without-librtmp \ - --without-libidn2 \ - --without-wolfssl \ - --without-brotli \ - --without-gnutls \ - --without-cyassl \ - --without-libpsl \ - --without-axtls \ - --disable-ldaps \ - --disable-ldap \ - --without-nss, V=1) \ + $(call gbuild, $<, curl-$(curl-version), , \ + LIBS="-pthread" \ + --with-zlib=$(ildir) \ + --with-ssl=$(idir) \ + --without-mesalink \ + --with-ca-fallback \ + --without-librtmp \ + --without-libidn2 \ + --without-wolfssl \ + --without-brotli \ + --without-gnutls \ + --without-cyassl \ + --without-libpsl \ + --without-axtls \ + --disable-ldaps \ + --disable-ldap \ + --without-nss, V=1) \ && echo "cURL $(curl-version)" > $@ # OpenSSL @@ -659,8 +661,8 @@ $(ibidir)/curl: $(tdir)/curl-$(curl-version).tar.gz \ #openssl-static = no-dso no-dynamic-engine no-shared #endif $(idir)/etc:; mkdir $@ -$(ibidir)/openssl: $(tdir)/openssl-$(openssl-version).tar.gz \ - $(tdir)/cert.pem \ +$(ibidir)/openssl: $(tdir)/openssl-$(openssl-version).tar.gz \ + $(tdir)/cert.pem \ $(ibidir)/bash | $(idir)/etc # According to OpenSSL's Wiki (link bellow), it can't automatically # detect Mac OS's structure. It will need some help. So we'll use @@ -669,27 +671,27 @@ $(ibidir)/openssl: $(tdir)/openssl-$(openssl-version).tar.gz \ # environment variable. # # https://wiki.openssl.org/index.php/Compilation_and_Installation - if [ x$(on_mac_os) = xyes ]; then \ - export KERNEL_BITS=64; \ + if [ x$(on_mac_os) = xyes ]; then \ + export KERNEL_BITS=64; \ copt="shared no-ssl2 no-ssl3 enable-ec_nistp_64_gcc_128"; \ - fi; \ - $(call gbuild, $<, openssl-$(openssl-version), , \ - zlib \ - $$copt \ - $(rpath_command) \ - --openssldir=$(idir)/etc/ssl \ - --with-zlib-lib=$(ildir) \ - --with-zlib-include=$(idir)/include, , , \ - ./config ) && \ - cp $(tdir)/cert.pem $(idir)/etc/ssl/cert.pem; \ - if [ $$? = 0 ]; then \ - if [ x$(on_mac_os) = xyes ]; then \ - echo "No need to fix rpath in libssl"; \ - else \ - patchelf --set-rpath $(ildir) $(ildir)/libssl.so; \ - fi; \ - echo "OpenSSL $(openssl-version)" > $@; \ - fi + fi; \ + $(call gbuild, $<, openssl-$(openssl-version), , \ + zlib \ + $$copt \ + $(rpath_command) \ + --openssldir=$(idir)/etc/ssl \ + --with-zlib-lib=$(ildir) \ + --with-zlib-include=$(idir)/include, , , \ + ./config ) \ + && cp $(tdir)/cert.pem $(idir)/etc/ssl/cert.pem \ + && if [ $$? = 0 ]; then \ + if [ x$(on_mac_os) = xyes ]; then \ + echo "No need to fix rpath in libssl"; \ + else \ + patchelf --set-rpath $(ildir) $(ildir)/libssl.so; \ + fi; \ + echo "OpenSSL $(openssl-version)" > $@; \ + fi # GNU Wget # @@ -705,22 +707,22 @@ $(ibidir)/openssl: $(tdir)/openssl-$(openssl-version).tar.gz \ # host system (especially a crash when these libraries are updated on the # host), they are disabled here. $(ibidir)/wget: $(tdir)/wget-$(wget-version).tar.lz \ - $(ibidir)/pkg-config \ + $(ibidir)/pkg-config \ $(ibidir)/openssl - libs="-pthread"; \ + libs="-pthread"; \ if [ x$(needs_ldl) = xyes ]; then libs="$$libs -ldl"; fi; \ - $(call gbuild, $<, wget-$(wget-version), , \ - LIBS="$$LIBS $$libs" \ - --with-libssl-prefix=$(idir) \ - --with-ssl=openssl \ - --with-openssl=yes \ - --without-metalink \ - --without-libuuid \ - --without-libpsl \ - --without-libidn \ - --disable-pcre2 \ - --disable-pcre \ - --disable-iri ) \ + $(call gbuild, $<, wget-$(wget-version), , \ + LIBS="$$LIBS $$libs" \ + --with-libssl-prefix=$(idir) \ + --with-ssl=openssl \ + --with-openssl=yes \ + --without-metalink \ + --without-libuuid \ + --without-libpsl \ + --without-libidn \ + --disable-pcre2 \ + --disable-pcre \ + --disable-iri ) \ && echo "GNU Wget $(wget-version)" > $@ @@ -752,16 +754,16 @@ $(ibidir)/coreutils: $(tdir)/coreutils-$(coreutils-version).tar.xz \ # The echo after the PatchELF loop is to avoid a crash if the last # file that PatchELF encounters is not usable (and it returns with # an error). - $(call gbuild, $<, coreutils-$(coreutils-version), static, \ - LDFLAGS="$(LDFLAGS)" CPPFLAGS="$(CPPFLAGS)" \ - --disable-silent-rules --with-openssl=yes, \ - -j$(numthreads)) \ - && if [ x$(on_mac_os) != xyes ]; then \ - for f in $(ibdir)/*; do \ - $(ibdir)/patchelf --set-rpath $(ildir) $$f; \ - done; \ - echo "PatchELF applied to all programs."; \ - fi \ + $(call gbuild, $<, coreutils-$(coreutils-version), static, \ + LDFLAGS="$(LDFLAGS)" CPPFLAGS="$(CPPFLAGS)" \ + --disable-silent-rules --with-openssl=yes, \ + -j$(numthreads)) \ + && if [ x$(on_mac_os) != xyes ]; then \ + for f in $(ibdir)/*; do \ + $(ibdir)/patchelf --set-rpath $(ildir) $$f; \ + done; \ + echo "PatchELF applied to all programs."; \ + fi \ && echo "GNU Coreutils $(coreutils-version)" > $@ $(ibidir)/diffutils: $(tdir)/diffutils-$(diffutils-version).tar.xz \ @@ -775,32 +777,32 @@ $(ibidir)/findutils: $(tdir)/findutils-$(findutils-version).tar.lz \ && echo "GNU Findutils $(findutils-version)" > $@ $(ibidir)/gawk: $(tdir)/gawk-$(gawk-version).tar.lz \ - $(ibidir)/bash \ - $(ibidir)/mpfr \ + $(ibidir)/bash \ + $(ibidir)/mpfr \ $(ibidir)/gmp # AWK doesn't include RPATH by default, so we'll have to manually # include it using the `patchelf' program (which was a dependency # of Bash). Just note that AWK produces two executables (for # example `gawk-4.2.1' and `gawk') and a symbolic link `awk' to one # of those executables. - $(call gbuild, $<, gawk-$(gawk-version), static, \ - --with-readline=$(idir)) \ - && if [ "x$(needpatchelf)" != x ]; then \ - if [ -f $(ibdir)/gawk ]; then \ - $(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/gawk; \ - fi; \ - if [ -f $(ibdir)/gawk-$(gawk-version) ]; then \ - $(ibdir)/patchelf --set-rpath $(ildir) \ - $(ibdir)/gawk-$(gawk-version); \ - fi; \ - fi \ + $(call gbuild, $<, gawk-$(gawk-version), static, \ + --with-readline=$(idir)) \ + && if [ "x$(needpatchelf)" != x ]; then \ + if [ -f $(ibdir)/gawk ]; then \ + $(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/gawk; \ + fi; \ + if [ -f $(ibdir)/gawk-$(gawk-version) ]; then \ + $(ibdir)/patchelf --set-rpath $(ildir) \ + $(ibdir)/gawk-$(gawk-version); \ + fi; \ + fi \ && echo "GNU AWK $(gawk-version)" > $@ $(ibidir)/git: $(tdir)/git-$(git-version).tar.xz \ $(ibidir)/curl - $(call gbuild, $<, git-$(git-version), static, \ + $(call gbuild, $<, git-$(git-version), static, \ --without-tcltk --with-shell=$(ibdir)/bash, \ - V=1) \ + V=1) \ && echo "Git $(git-version)" > $@ $(ibidir)/gmp: $(tdir)/gmp-$(gmp-version).tar.lz \ @@ -813,7 +815,7 @@ $(ibidir)/gmp: $(tdir)/gmp-$(gmp-version).tar.lz \ $(ibidir)/glibtool: $(tdir)/libtool-$(libtool-version).tar.xz \ $(ibidir)/m4 $(call gbuild, $<, libtool-$(libtool-version), static, \ - --program-prefix=g) \ + --program-prefix=g) \ && echo "GNU Libtool $(libtool-version)" > $@ $(ibidir)/grep: $(tdir)/grep-$(grep-version).tar.xz \ @@ -854,10 +856,10 @@ else needlibbsd = $(ibidir)/libbsd endif $(ibidir)/metastore: $(tdir)/metastore-$(metastore-version).tar.gz \ - $(ibidir)/coreutils \ - $(ibidir)/gawk \ - $(ibidir)/git \ - $(ibidir)/sed \ + $(ibidir)/coreutils \ + $(ibidir)/gawk \ + $(ibidir)/git \ + $(ibidir)/sed \ $(needlibbsd) # The build command below will change the current directory of this @@ -879,29 +881,29 @@ $(ibidir)/metastore: $(tdir)/metastore-$(metastore-version).tar.gz \ # Note that the -O and -G options used here are currently only in a # fork of `metastore' currently hosted at: # https://github.com/mohammad-akhlaghi/metastore - user=$$(whoami); \ - group=$$(groups | awk '{print $$1}'); \ - cd $$current_dir; \ - if [ -f $(ibdir)/metastore ]; then \ - for f in pre-commit post-checkout; do \ - sed -e's|@USER[@]|'$$user'|g' \ - -e's|@GROUP[@]|'$$group'|g' \ - -e's|@BINDIR[@]|$(ibdir)|g' \ - -e's|@TOP_PROJECT_DIR[@]|'$$current_dir'|g' \ + user=$$(whoami); \ + group=$$(groups | awk '{print $$1}'); \ + cd $$current_dir; \ + if [ -f $(ibdir)/metastore ]; then \ + for f in pre-commit post-checkout; do \ + sed -e's|@USER[@]|'$$user'|g' \ + -e's|@GROUP[@]|'$$group'|g' \ + -e's|@BINDIR[@]|$(ibdir)|g' \ + -e's|@TOP_PROJECT_DIR[@]|'$$current_dir'|g' \ reproduce/software/bash/git-$$f > .git/hooks/$$f; \ - chmod +x .git/hooks/$$f; \ - echo "Metastore (forked) $(metastore-version)" > $@; \ - done; \ - else \ - echo; echo; echo; \ - echo "*****************"; \ - echo "metastore couldn't be installed!"; \ - echo; \ + chmod +x .git/hooks/$$f; \ + echo "Metastore (forked) $(metastore-version)" > $@; \ + done; \ + else \ + echo; echo; echo; \ + echo "*****************"; \ + echo "metastore couldn't be installed!"; \ + echo; \ echo "Its used for preserving timestamps on Git commits."; \ echo "Its useful for development, not simple running of "; \ echo "the project. So we won't stop the configuration "; \ - echo "because it wasn't built."; \ - echo "*****************"; \ + echo "because it wasn't built."; \ + echo "*****************"; \ fi $(ibidir)/mpfr: $(tdir)/mpfr-$(mpfr-version).tar.xz \ @@ -916,11 +918,11 @@ $(ibidir)/pkg-config: $(tdir)/pkg-config-$(pkgconfig-version).tar.gz \ # building Glib (as part of pkg-config). So to be safe, for Mac # systems, we'll make sure it will use LLVM's Clang. if [ x$(on_mac_os) = xyes ]; then export compiler="CC=clang"; \ - else export compiler=""; \ - fi; \ - $(call gbuild, $<, pkg-config-$(pkgconfig-version), static, \ - $$compiler --with-internal-glib \ - --with-pc-path=$(ildir)/pkgconfig) \ + else export compiler=""; \ + fi; \ + $(call gbuild, $<, pkg-config-$(pkgconfig-version), static, \ + $$compiler --with-internal-glib \ + --with-pc-path=$(ildir)/pkgconfig) \ && echo "pkg-config $(pkgconfig-version)" > $@ $(ibidir)/sed: $(tdir)/sed-$(sed-version).tar.xz \ @@ -955,17 +957,17 @@ binutils-prerequisites = $(tdir)/binutils-$(binutils-version).tar.lz \ $(ibidir)/bash endif $(ibidir)/binutils: $(binutils-prerequisites) - if [ x$(on_mac_os) = xyes ]; then \ - $(call makelink,as) \ - $(call makelink,ar) \ - $(call makelink,ld) \ - $(call makelink,nm) \ - $(call makelink,ps) \ - $(call makelink,ranlib) \ - echo "" > $@; \ - else \ + if [ x$(on_mac_os) = xyes ]; then \ + $(call makelink,as); \ + $(call makelink,ar); \ + $(call makelink,ld); \ + $(call makelink,nm); \ + $(call makelink,ps); \ + $(call makelink,ranlib); \ + echo "" > $@; \ + else \ $(call gbuild, $<, binutils-$(binutils-version), static) \ - && echo "GNU Binutils $(binutils-version)" > $@; \ + && echo "GNU Binutils $(binutils-version)" > $@; \ fi # `file' is not a prerequisite of GCC. However, since it is low level, it is @@ -1002,21 +1004,21 @@ ifeq ($(host_cc),1) gcc-prerequisites = else gcc-prerequisites = $(tdir)/gcc-$(gcc-version).tar.xz \ - $(ibidir)/binutils \ - $(ibidir)/isl \ + $(ibidir)/binutils \ + $(ibidir)/isl \ $(ibidir)/mpc endif -$(ibidir)/gcc: $(gcc-prerequisites) \ - $(ibidir)/sed \ - $(ibidir)/bash \ - $(ibidir)/file \ - $(ibidir)/gawk \ - $(ibidir)/grep \ - $(ibidir)/which \ - $(ibidir)/glibtool \ - $(ibidir)/binutils \ - $(ibidir)/coreutils \ - $(ibidir)/diffutils \ +$(ibidir)/gcc: $(gcc-prerequisites) \ + $(ibidir)/sed \ + $(ibidir)/bash \ + $(ibidir)/file \ + $(ibidir)/gawk \ + $(ibidir)/grep \ + $(ibidir)/which \ + $(ibidir)/glibtool \ + $(ibidir)/binutils \ + $(ibidir)/coreutils \ + $(ibidir)/diffutils \ $(ibidir)/findutils # GCC builds is own libraries in '$(idir)/lib64'. But all other @@ -1024,57 +1026,57 @@ $(ibidir)/gcc: $(gcc-prerequisites) \ # single architecture, we can trick GCC into building its libraries # in '$(idir)/lib' by defining the '$(idir)/lib64' as a symbolic # link to '$(idir)/lib'. - if [ $(host_cc) = 1 ]; then \ - $(call makelink,gcc); \ - $(call makelink,g++,mandatory); \ - $(call makelink,gfortran,mandatory); \ - $(call makelink,strip,mandatory); \ - ln -sf $$(which gcc) $(ibdir)/cc; \ - ccinfo=$$(gcc --version | awk 'NR==1'); \ - echo "C compiler (""$$ccinfo"")" > $@; \ - else \ + if [ $(host_cc) = 1 ]; then \ + $(call makelink,gcc); \ + $(call makelink,g++,mandatory); \ + $(call makelink,gfortran,mandatory); \ + $(call makelink,strip,mandatory); \ + ln -sf $$(which gcc) $(ibdir)/cc; \ + ccinfo=$$(gcc --version | awk 'NR==1'); \ + echo "C compiler (""$$ccinfo"")" > $@; \ + else \ rm -f $(ibdir)/gcc* $(ibdir)/g++ $(ibdir)/gfortran $(ibdir)/gcov*;\ - rm -rf $(ildir)/gcc $(ildir)/libcc* $(ildir)/libgcc*; \ + rm -rf $(ildir)/gcc $(ildir)/libcc* $(ildir)/libgcc*; \ rm -rf $(ildir)/libgfortran* $(ildir)/libstdc* rm $(idir)/x86_64*;\ - \ - ln -fs $(ildir) $(idir)/lib64; \ - \ - cd $(ddir); \ - rm -rf gcc-build gcc-$(gcc-version); \ - tar xf $< \ - && mkdir $(ddir)/gcc-build \ - && cd $(ddir)/gcc-build \ - && ../gcc-$(gcc-version)/configure SHELL=$(ibdir)/bash \ - --prefix=$(idir) \ - --with-mpc=$(idir) \ - --with-mpfr=$(idir) \ - --with-gmp=$(idir) \ - --with-isl=$(idir) \ - --with-build-time-tools=$(idir) \ - --enable-shared \ - --disable-multilib \ - --disable-multiarch \ - --enable-threads=posix \ - --with-local-prefix=$(idir) \ - --enable-languages=c,c++,fortran,objc,obj-c++ \ - --disable-libada \ - --disable-nls \ - --enable-default-pie \ - --enable-default-ssp \ - --enable-cet=auto \ - --enable-decimal-float \ - && make SHELL=$(ibdir)/bash -j$$(nproc) \ - && make SHELL=$(ibdir)/bash install \ - && cd .. \ - && rm -rf gcc-build gcc-$(gcc-version) \ - \ - && if [ "x$(on_mac_os)" != xyes ]; then \ - for f in $$(find $(idir)/libexec/gcc); do \ - if ldd $$f &> /dev/null; then \ - patchelf --set-rpath $(ildir) $$f; \ - fi; \ - done; \ - fi; \ - ln -sf $(ibdir)/gcc $(ibdir)/cc \ - && echo "GNU Compiler Collection (GCC) $(gcc-version)" > $@; \ + \ + ln -fs $(ildir) $(idir)/lib64; \ + \ + cd $(ddir); \ + rm -rf gcc-build gcc-$(gcc-version); \ + tar xf $< \ + && mkdir $(ddir)/gcc-build \ + && cd $(ddir)/gcc-build \ + && ../gcc-$(gcc-version)/configure SHELL=$(ibdir)/bash \ + --prefix=$(idir) \ + --with-mpc=$(idir) \ + --with-mpfr=$(idir) \ + --with-gmp=$(idir) \ + --with-isl=$(idir) \ + --with-build-time-tools=$(idir) \ + --enable-shared \ + --disable-multilib \ + --disable-multiarch \ + --enable-threads=posix \ + --with-local-prefix=$(idir) \ + --enable-languages=c,c++,fortran,objc,obj-c++ \ + --disable-libada \ + --disable-nls \ + --enable-default-pie \ + --enable-default-ssp \ + --enable-cet=auto \ + --enable-decimal-float \ + && make SHELL=$(ibdir)/bash -j$$(nproc) \ + && make SHELL=$(ibdir)/bash install \ + && cd .. \ + && rm -rf gcc-build gcc-$(gcc-version) \ + \ + && if [ "x$(on_mac_os)" != xyes ]; then \ + for f in $$(find $(idir)/libexec/gcc); do \ + if ldd $$f &> /dev/null; then \ + patchelf --set-rpath $(ildir) $$f; \ + fi; \ + done; \ + fi; \ + ln -sf $(ibdir)/gcc $(ibdir)/cc \ + && echo "GNU Compiler Collection (GCC) $(gcc-version)" > $@; \ fi diff --git a/reproduce/software/make/build-rules.mk b/reproduce/software/make/build-rules.mk index 07eb088..f888df7 100644 --- a/reproduce/software/make/build-rules.mk +++ b/reproduce/software/make/build-rules.mk @@ -54,46 +54,46 @@ # NOTE: A program might not contain any configure script. In this case, # we'll just pass a non-relevant function like `pwd'. So SED should be used # to modify `confscript' or to set `configop'. -gbuild = if [ x$(static_build) = xyes ] && [ "x$(3)" = xstatic ]; then \ - export LDFLAGS="$$LDFLAGS -static"; \ - fi; \ - check="$(6)"; \ - if [ x"$$check" = x ]; then check="echo Skipping-check"; fi; \ - cd $(ddir); rm -rf $(2); \ - if ! tar xf $(1); then echo; echo "Tar error"; exit 1; fi; \ - cd $(2); \ - \ - if [ x"$(strip $(7))" = x ]; then confscript=./configure; \ - else confscript="$(strip $(7))"; \ - fi; \ - \ - if [ -f $(ibdir)/bash ]; then \ - if [ -f $$confscript ]; then \ - sed -e's|\#\! /bin/sh|\#\! $(ibdir)/bash|' \ - -e's|\#\!/bin/sh|\#\! $(ibdir)/bash|' \ - $$confscript > $$confscript-tmp; \ - mv $$confscript-tmp $$confscript; \ - chmod +x $$confscript; \ - fi; \ - shellop="SHELL=$(ibdir)/bash"; \ - elif [ -f /bin/bash ]; then shellop="SHELL=/bin/bash"; \ - else shellop="SHELL=/bin/sh"; \ - fi; \ - \ - if [ -f $$confscript ]; then \ - if [ x"$(strip $(2))" = x"zlib-$(zlib-version)" ]; then \ - configop="--prefix=$(idir)"; \ - else configop="$$shellop --prefix=$(idir)"; \ - fi; \ - fi; \ - \ - echo; echo "Using '$$confscript' to configure:"; echo; \ - echo "$$confscript $(4) $$configop"; echo; \ - $$confscript $(4) $$configop \ - && make "$$shellop" $(5) \ - && $$check \ - && make "$$shellop" install $(8) \ - && cd .. \ +gbuild = if [ x$(static_build) = xyes ] && [ "x$(3)" = xstatic ]; then \ + export LDFLAGS="$$LDFLAGS -static"; \ + fi; \ + check="$(6)"; \ + if [ x"$$check" = x ]; then check="echo Skipping-check"; fi; \ + cd $(ddir); rm -rf $(2); \ + if ! tar xf $(1); then echo; echo "Tar error"; exit 1; fi; \ + cd $(2); \ + \ + if [ x"$(strip $(7))" = x ]; then confscript=./configure; \ + else confscript="$(strip $(7))"; \ + fi; \ + \ + if [ -f $(ibdir)/bash ]; then \ + if [ -f $$confscript ]; then \ + sed -e's|\#\! /bin/sh|\#\! $(ibdir)/bash|' \ + -e's|\#\!/bin/sh|\#\! $(ibdir)/bash|' \ + $$confscript > $$confscript-tmp; \ + mv $$confscript-tmp $$confscript; \ + chmod +x $$confscript; \ + fi; \ + shellop="SHELL=$(ibdir)/bash"; \ + elif [ -f /bin/bash ]; then shellop="SHELL=/bin/bash"; \ + else shellop="SHELL=/bin/sh"; \ + fi; \ + \ + if [ -f $$confscript ]; then \ + if [ x"$(strip $(2))" = x"zlib-$(zlib-version)" ]; then \ + configop="--prefix=$(idir)"; \ + else configop="$$shellop --prefix=$(idir)"; \ + fi; \ + fi; \ + \ + echo; echo "Using '$$confscript' to configure:"; echo; \ + echo "$$confscript $(4) $$configop"; echo; \ + $$confscript $(4) $$configop \ + && make "$$shellop" $(5) \ + && $$check \ + && make "$$shellop" install $(8) \ + && cd .. \ && rm -rf $(2) @@ -106,16 +106,17 @@ gbuild = if [ x$(static_build) = xyes ] && [ "x$(3)" = xstatic ]; then \ # no way to change it. # # https://stackoverflow.com/questions/21167014/how-to-set-shell-variable-in-makefiles-generated-by-cmake -cbuild = if [ x$(static_build) = xyes ] && [ $(3)x = staticx ]; then \ - export LDFLAGS="$$LDFLAGS -static"; \ - opts="-DBUILD_SHARED_LIBS=OFF"; \ - fi; \ - cd $(ddir) && rm -rf $(2) && tar xf $(1) && cd $(2) && \ - rm -rf project-build && mkdir project-build && \ - cd project-build && \ - cmake .. -DCMAKE_LIBRARY_PATH=$(ildir) \ - -DCMAKE_INSTALL_PREFIX=$(idir) \ - -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON $$opts $(4) && \ - make && make install && \ - cd ../.. && \ +cbuild = if [ x$(static_build) = xyes ] && [ $(3)x = staticx ]; then \ + export LDFLAGS="$$LDFLAGS -static"; \ + opts="-DBUILD_SHARED_LIBS=OFF"; \ + fi; \ + cd $(ddir) && rm -rf $(2) && tar xf $(1) && cd $(2) \ + && rm -rf project-build \ + && mkdir project-build \ + && cd project-build \ + && cmake .. -DCMAKE_LIBRARY_PATH=$(ildir) \ + -DCMAKE_INSTALL_PREFIX=$(idir) \ + -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON $$opts $(4) \ + && make && make install \ + && cd ../.. \ rm -rf $(2) diff --git a/reproduce/software/make/high-level.mk b/reproduce/software/make/high-level.mk index 969cf8a..c930814 100644 --- a/reproduce/software/make/high-level.mk +++ b/reproduce/software/make/high-level.mk @@ -105,34 +105,34 @@ include reproduce/software/make/python.mk # convention, but include the name/version in their tarball names with # another format, we'll do the modification before the download so the # downloaded file has our desired format. -tarballs = $(foreach t, astrometry.net-$(astrometrynet-version).tar.gz \ - atlas-$(atlas-version).tar.bz2 \ - cairo-$(cairo-version).tar.xz \ - cdsclient-$(cdsclient-version).tar.gz \ - cfitsio-$(cfitsio-version).tar.gz \ - cmake-$(cmake-version).tar.gz \ - freetype-$(freetype-version).tar.gz \ - fftw-$(fftw-version).tar.gz \ - ghostscript-$(ghostscript-version).tar.gz \ - gnuastro-$(gnuastro-version).tar.lz \ - gsl-$(gsl-version).tar.gz \ - hdf5-$(hdf5-version).tar.gz \ - install-tl-unx.tar.gz \ - jpegsrc.$(libjpeg-version).tar.gz \ - lapack-$(lapack-version).tar.gz \ - libpng-$(libpng-version).tar.xz \ - libgit2-$(libgit2-version).tar.gz \ - libxml2-$(libxml2-version).tar.gz \ - netpbm-$(netpbm-version).tgz \ - openmpi-$(openmpi-version).tar.gz \ - openblas-$(openblas-version).tar.gz \ - pixman-$(pixman-version).tar.gz \ - scamp-$(scamp-version).tar.lz \ - sextractor-$(sextractor-version).tar.lz \ - swarp-$(swarp-version).tar.gz \ - swig-$(swig-version).tar.gz \ - tiff-$(libtiff-version).tar.gz \ - wcslib-$(wcslib-version).tar.bz2 \ +tarballs = $(foreach t, astrometry.net-$(astrometrynet-version).tar.gz \ + atlas-$(atlas-version).tar.bz2 \ + cairo-$(cairo-version).tar.xz \ + cdsclient-$(cdsclient-version).tar.gz \ + cfitsio-$(cfitsio-version).tar.gz \ + cmake-$(cmake-version).tar.gz \ + freetype-$(freetype-version).tar.gz \ + fftw-$(fftw-version).tar.gz \ + ghostscript-$(ghostscript-version).tar.gz \ + gnuastro-$(gnuastro-version).tar.lz \ + gsl-$(gsl-version).tar.gz \ + hdf5-$(hdf5-version).tar.gz \ + install-tl-unx.tar.gz \ + jpegsrc.$(libjpeg-version).tar.gz \ + lapack-$(lapack-version).tar.gz \ + libpng-$(libpng-version).tar.xz \ + libgit2-$(libgit2-version).tar.gz \ + libxml2-$(libxml2-version).tar.gz \ + netpbm-$(netpbm-version).tgz \ + openmpi-$(openmpi-version).tar.gz \ + openblas-$(openblas-version).tar.gz \ + pixman-$(pixman-version).tar.gz \ + scamp-$(scamp-version).tar.lz \ + sextractor-$(sextractor-version).tar.lz \ + swarp-$(swarp-version).tar.gz \ + swig-$(swig-version).tar.gz \ + tiff-$(libtiff-version).tar.gz \ + wcslib-$(wcslib-version).tar.bz2 \ , $(tdir)/$(t) ) $(tarballs): $(tdir)/%: | $(lockdir) if [ -f $(DEPENDENCIES-DIR)/$* ]; then @@ -140,18 +140,18 @@ $(tarballs): $(tdir)/%: | $(lockdir) else # Remove all numbers, `-' and `.' from the tarball name so we can # search more easily only with the program name. - n=$$(echo $* | sed -e's/[0-9\-]/ /g' -e's/\./ /g' \ + n=$$(echo $* | sed -e's/[0-9\-]/ /g' -e's/\./ /g' \ | awk '{print $$1}' ) # Set the top download link of the requested tarball. mergenames=1 if [ $$n = cfitsio ]; then mergenames=0 - v=$$(echo $(cfitsio-version) | sed -e's/\.//' \ - | awk '{l=length($$1); \ - printf (l==4 ? "%d\n" \ - : (l==3 ? "%d0\n" \ - : (l==2 ? "%d00\n" \ + v=$$(echo $(cfitsio-version) | sed -e's/\.//' \ + | awk '{l=length($$1); \ + printf (l==4 ? "%d\n" \ + : (l==3 ? "%d0\n" \ + : (l==2 ? "%d00\n" \ : "%d000\n") ), $$1)}') w=https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/cfitsio$$v.tar.gz elif [ $$n = astrometry ]; then w=http://astrometry.net/downloads @@ -252,7 +252,7 @@ $(ibidir)/cfitsio: $(tdir)/cfitsio-$(cfitsio-version).tar.gz \ # it manually before doing the standard build. topdir=$(pwd); cd $(ddir); tar xf $< customtar=cfitsio-$(cfitsio-version)-custom.tar.gz - sed cfitsio/configure \ + sed cfitsio/configure \ -e's|/usr/bin/curl-config|$(ibdir)/curl-config|g' \ > cfitsio/configure_tmp mv cfitsio/configure_tmp cfitsio/configure @@ -261,16 +261,16 @@ $(ibidir)/cfitsio: $(tdir)/cfitsio-$(cfitsio-version).tar.gz \ cd $$topdir # Continue the standard build on the customized tarball. - $(call gbuild, $$customtar, cfitsio, static, \ + $(call gbuild, $$customtar, cfitsio, static, \ --enable-sse2 --enable-reentrant) \ - && rm $$customtar \ + && rm $$customtar \ && echo "CFITSIO $(cfitsio-version)" > $@ -$(ibidir)/cairo: $(tdir)/cairo-$(cairo-version).tar.xz \ - $(ibidir)/freetype \ - $(ibidir)/libpng \ +$(ibidir)/cairo: $(tdir)/cairo-$(cairo-version).tar.xz \ + $(ibidir)/freetype \ + $(ibidir)/libpng \ $(ibidir)/pixman - $(call gbuild, $<, cairo-$(cairo-version), static) \ + $(call gbuild, $<, cairo-$(cairo-version), static) \ && echo "Cairo $(cairo-version)" > $@ $(ibidir)/gsl: $(tdir)/gsl-$(gsl-version).tar.gz @@ -278,9 +278,9 @@ $(ibidir)/gsl: $(tdir)/gsl-$(gsl-version).tar.gz && echo "GNU Scientific Library $(gsl-version)" > $@ $(ibidir)/fftw: $(tdir)/fftw-$(fftw-version).tar.gz - $(call gbuild, $<, fftw-$(fftw-version), static, \ - --enable-shared) \ - && cp $(dtexdir)/fftw.tex $(ictdir)/ \ + $(call gbuild, $<, fftw-$(fftw-version), static, \ + --enable-shared) \ + && cp $(dtexdir)/fftw.tex $(ictdir)/ \ && echo "FFTW $(fftw-version) \citep{fftw}" > $@ # Freetype is necessary to install matplotlib @@ -291,11 +291,11 @@ $(ibidir)/freetype: $(tdir)/freetype-$(freetype-version).tar.gz \ $(ibidir)/hdf5: $(tdir)/hdf5-$(hdf5-version).tar.gz \ $(ibidir)/openmpi - export CC=mpicc; \ - export FC=mpif90; \ + export CC=mpicc; \ + export FC=mpif90; \ $(call gbuild, $<, hdf5-$(hdf5-version), static, \ - --enable-parallel \ - --enable-fortran, V=1) \ + --enable-parallel \ + --enable-fortran, V=1) \ && echo "HDF5 library $(hdf5-version)" > $@ $(ibidir)/libjpeg: $(tdir)/jpegsrc.$(libjpeg-version).tar.gz @@ -371,57 +371,57 @@ $(ibidir)/atlas: $(tdir)/atlas-$(atlas-version).tar.bz2 \ # The linking step here doesn't recognize the `-Wl' in the # `rpath_command'. export LDFLAGS=-L$(ildir) - cd $(ddir) \ - && tar xf $< \ - && cd ATLAS \ - && rm -rf build \ - && mkdir build \ - && cd build \ - && ../configure -b 64 -D c -DPentiumCPS=$$core \ - --with-netlib-lapack-tarfile=$(word 2, $^) \ - --cripple-atlas-performance \ - -Fa alg -fPIC --shared $$clangflag \ - --prefix=$(idir) \ - && make \ - && if [ "x$(on_mac_os)" != xyes ]; then \ - cd lib && make -f $$sharedmk && cd .. \ - && for l in lib/*.$$s*; do \ - patchelf --set-rpath $(ildir) $$l; done \ - && cp -d lib/*.$$s* $(ildir) \ + cd $(ddir) \ + && tar xf $< \ + && cd ATLAS \ + && rm -rf build \ + && mkdir build \ + && cd build \ + && ../configure -b 64 -D c -DPentiumCPS=$$core \ + --with-netlib-lapack-tarfile=$(word 2, $^) \ + --cripple-atlas-performance \ + -Fa alg -fPIC --shared $$clangflag \ + --prefix=$(idir) \ + && make \ + && if [ "x$(on_mac_os)" != xyes ]; then \ + cd lib && make -f $$sharedmk && cd .. \ + && for l in lib/*.$$s*; do \ + patchelf --set-rpath $(ildir) $$l; done \ + && cp -d lib/*.$$s* $(ildir) \ && ln -fs $(ildir)/libblas.$$s $(ildir)/libblas.$$m \ && ln -fs $(ildir)/libf77blas.$$s $(ildir)/libf77blas.$$m \ && ln -fs $(ildir)/liblapack.$$f $(ildir)/liblapack.$$s \ && ln -fs $(ildir)/liblapack.$$f $(ildir)/liblapack.$$m; \ - fi \ + fi \ && make install # We need to check the existance of `libptlapack.a', but we can't # do this in the `&&' steps above (it will conflict). So we'll do # the check after seeing if `libtatlas.so' is installed, then we'll # finalize the build (delete the untarred directory). - if [ "x$(on_mac_os)" != xyes ]; then \ + if [ "x$(on_mac_os)" != xyes ]; then \ [ -e lib/libptlapack.a ] && cp lib/libptlapack.a $(ildir); \ - cd $(ddir); \ - rm -rf ATLAS; \ + cd $(ddir); \ + rm -rf ATLAS; \ fi # We'll check the full installation with the static library (not # currently building shared library on Mac. - if [ -f $(ildir)/libatlas.a ]; then \ + if [ -f $(ildir)/libatlas.a ]; then \ echo "ATLAS $(atlas-version)" > $@; \ fi $(ibidir)/openblas: $(tdir)/openblas-$(openblas-version).tar.gz - if [ x$(on_mac_os) = xyes ]; then \ - export CC=clang; \ - fi; \ - cd $(ddir) \ - && tar xf $< \ - && cd OpenBLAS-$(openblas-version) \ - && make \ - && make PREFIX=$(idir) install \ - && cd .. \ - && rm -rf OpenBLAS-$(openblas-version) \ + if [ x$(on_mac_os) = xyes ]; then \ + export CC=clang; \ + fi; \ + cd $(ddir) \ + && tar xf $< \ + && cd OpenBLAS-$(openblas-version) \ + && make \ + && make PREFIX=$(idir) install \ + && cd .. \ + && rm -rf OpenBLAS-$(openblas-version) \ && echo "OpenBLAS $(openblas-version)" > $@ @@ -445,11 +445,11 @@ $(ibidir)/openblas: $(tdir)/openblas-$(openblas-version).tar.gz # problem we have been having so far with Mac systems: # https://libgit2.org/docs/guides/build-and-link $(ibidir)/libgit2: $(tdir)/libgit2-$(libgit2-version).tar.gz \ - $(ibidir)/cmake \ + $(ibidir)/cmake \ $(ibidir)/curl # Build and install the library. - $(call cbuild, $<, libgit2-$(libgit2-version), static, \ - -DUSE_SSH=OFF -DBUILD_CLAR=OFF \ + $(call cbuild, $<, libgit2-$(libgit2-version), static, \ + -DUSE_SSH=OFF -DBUILD_CLAR=OFF \ -DTHREADSAFE=ON ) # Correct the shared library absolute address if necessary. @@ -464,10 +464,10 @@ $(ibidir)/libgit2: $(tdir)/libgit2-$(libgit2-version).tar.gz \ $(ibidir)/wcslib: $(tdir)/wcslib-$(wcslib-version).tar.bz2 \ $(ibidir)/cfitsio # Build and install the library. - $(call gbuild, $<, wcslib-$(wcslib-version), , \ - LIBS="-pthread -lcurl -lm" \ - --with-cfitsiolib=$(ildir) \ - --with-cfitsioinc=$(idir)/include \ + $(call gbuild, $<, wcslib-$(wcslib-version), , \ + LIBS="-pthread -lcurl -lm" \ + --with-cfitsiolib=$(ildir) \ + --with-cfitsioinc=$(idir)/include \ --without-pgplot --disable-fortran) # Correct the shared library absolute address if necessary. @@ -490,27 +490,27 @@ $(ibidir)/wcslib: $(tdir)/wcslib-$(wcslib-version).tar.bz2 \ # installation directory and the Python executable (by default it will look # for /usr/bin/python) $(ibidir)/astrometrynet: $(tdir)/astrometry.net-$(astrometrynet-version).tar.gz \ - $(ibidir)/cairo \ - $(ibidir)/cfitsio \ - $(ibidir)/gsl \ - $(ibidir)/libjpeg \ - $(ibidir)/libpng \ - $(ibidir)/netpbm \ - $(ipydir)/numpy \ - $(ibidir)/python \ - $(ibidir)/swig \ - $(ibidir)/wcslib - cd $(ddir) \ - && if ! tar xf $<; then echo; echo "Tar error"; exit 1; fi \ - && cd astrometry.net-$(astrometrynet-version) \ - && make \ - && make py \ - && make extra \ - && make install INSTALL_DIR=$(idir) PYTHON_SCRIPT="$(ibdir)/python" \ - && cd .. \ - && rm -rf astrometry.net-$(astrometrynet-version) \ - && cp $(dtexdir)/astrometrynet.tex $(ictdir)/ \ - && echo "Astrometry.net $(astrometrynet-version) \citep{astrometrynet}" > $@ + $(ibidir)/cfitsio \ + $(ibidir)/libjpeg \ + $(ibidir)/libpng \ + $(ibidir)/netpbm \ + $(ibidir)/python \ + $(ibidir)/wcslib \ + $(ibidir)/cairo \ + $(ipydir)/numpy \ + $(ibidir)/swig \ + $(ibidir)/gsl + cd $(ddir) \ + && if ! tar xf $<; then echo; echo "Tar error"; exit 1; fi \ + && cd astrometry.net-$(astrometrynet-version) \ + && make \ + && make py \ + && make extra \ + && make install INSTALL_DIR=$(idir) PYTHON_SCRIPT="$(ibdir)/python" \ + && cd .. \ + && rm -rf astrometry.net-$(astrometrynet-version) \ + && cp $(dtexdir)/astrometrynet.tex $(ictdir)/ \ + && echo "Astrometry.net $(astrometrynet-version) \citep{astrometrynet}" > $@ # cdsclient is a set of software written in c to interact with astronomical # database servers. It is a dependency of `scamp' to be able to download @@ -520,15 +520,15 @@ $(ibidir)/astrometrynet: $(tdir)/astrometry.net-$(astrometrynet-version).tar.gz # Otherwise this software will be re-built each time the configure step is # invoked. $(ibidir)/cdsclient: $(tdir)/cdsclient-$(cdsclient-version).tar.gz - cd $(ddir) \ - && tar xf $< \ - && cd cdsclient-$(cdsclient-version) \ - && touch * \ - && ./configure --prefix=$(idir) \ - && make \ - && make install \ - && cd .. \ - && rm -rf cdsclient-$(cdsclient-version) \ + cd $(ddir) \ + && tar xf $< \ + && cd cdsclient-$(cdsclient-version) \ + && touch * \ + && ./configure --prefix=$(idir) \ + && make \ + && make install \ + && cd .. \ + && rm -rf cdsclient-$(cdsclient-version) \ && echo "cdsclient $(cdsclient-version)" > $@ # CMake can be built with its custom `./bootstrap' script. @@ -540,20 +540,20 @@ $(ibidir)/cmake: $(tdir)/cmake-$(cmake-version).tar.gz \ # # On Mac systems, the build complains about `clang' specific # features, so we can't use our own GCC build here. - if [ x$(on_mac_os) = xyes ]; then \ - export CC=clang; \ - export CXX=clang++; \ - fi; \ - cd $(ddir) \ - && rm -rf cmake-$(cmake-version) \ - && tar xf $< \ - && cd cmake-$(cmake-version) \ - && ./bootstrap --prefix=$(idir) --system-curl --system-zlib \ - --system-bzip2 --system-liblzma --no-qt-gui \ - && make LIBS="$$LIBS -lssl -lcrypto -lz" VERBOSE=1 \ - && make install \ - && cd .. \ - && rm -rf cmake-$(cmake-version) \ + if [ x$(on_mac_os) = xyes ]; then \ + export CC=clang; \ + export CXX=clang++; \ + fi; \ + cd $(ddir) \ + && rm -rf cmake-$(cmake-version) \ + && tar xf $< \ + && cd cmake-$(cmake-version) \ + && ./bootstrap --prefix=$(idir) --system-curl --system-zlib \ + --system-bzip2 --system-liblzma --no-qt-gui \ + && make LIBS="$$LIBS -lssl -lcrypto -lz" VERBOSE=1 \ + && make install \ + && cd .. \ + && rm -rf cmake-$(cmake-version) \ && echo "CMake $(cmake-version)" > $@ $(ibidir)/ghostscript: $(tdir)/ghostscript-$(ghostscript-version).tar.gz @@ -566,19 +566,19 @@ $(ibidir)/ghostscript: $(tdir)/ghostscript-$(ghostscript-version).tar.gz # building in parallel, its better to have these packages start building # early. $(ibidir)/gnuastro: $(tdir)/gnuastro-$(gnuastro-version).tar.lz \ - $(ibidir)/gsl \ - $(ibidir)/wcslib \ - $(ibidir)/libjpeg \ - $(ibidir)/libtiff \ - $(ibidir)/libgit2 \ - $(ibidir)/ghostscript + $(ibidir)/ghostscript \ + $(ibidir)/libjpeg \ + $(ibidir)/libtiff \ + $(ibidir)/libgit2 \ + $(ibidir)/wcslib \ + $(ibidir)/gsl ifeq ($(static_build),yes) staticopts="--enable-static=yes --enable-shared=no"; endif $(call gbuild, $<, gnuastro-$(gnuastro-version), static, \ - $$staticopts, -j$(numthreads), \ - make check -j$(numthreads)) \ - && cp $(dtexdir)/gnuastro.tex $(ictdir)/ \ + $$staticopts, -j$(numthreads), \ + make check -j$(numthreads)) \ + && cp $(dtexdir)/gnuastro.tex $(ictdir)/ \ && echo "GNU Astronomy Utilities $(gnuastro-version) \citep{gnuastro}" > $@ # Netpbm is a prerequisite of Astrometry-net, it contains a lot of programs. @@ -587,48 +587,48 @@ endif # ask to the user. We give all answers with a pipe to the scripts (configure # and install). The questions are different depending on the system (tested # on GNU/Linux and Mac OS). -$(ibidir)/netpbm: $(tdir)/netpbm-$(netpbm-version).tgz \ - $(ibidir)/libjpeg \ - $(ibidir)/libpng \ - $(ibidir)/libtiff \ - $(ibidir)/libxml2 \ +$(ibidir)/netpbm: $(tdir)/netpbm-$(netpbm-version).tgz \ + $(ibidir)/libjpeg \ + $(ibidir)/libtiff \ + $(ibidir)/libxml2 \ + $(ibidir)/libpng \ $(ibidir)/unzip - if [ x$(on_mac_os) = xyes ]; then \ - answers='\n\n\n\n\n\n\n\n\n\n\n\nnone\n\n\n'; \ - else \ - answers='\n\n\n\ny\n\n\n\n\n\n\n\n\n\n\n\n\n'; \ - fi; \ - cd $(ddir) \ - && unpackdir=netpbm-$(netpbm-version) \ - && rm -rf $$unpackdir \ - && if ! tar xf $<; then echo; echo "Tar error"; exit 1; fi \ - && cd $$unpackdir \ - && printf "$$answers" | ./configure \ - && make \ - && rm -rf $(ddir)/$$unpackdir/install \ - && make package pkgdir=$(ddir)/$$unpackdir/install \ - && printf "$(ddir)/$$unpackdir/install\n$(idir)\n\n\nN\n\n\n\n\nN\n\n" \ - | ./installnetpbm \ - && cd .. \ - && rm -rf $$unpackdir \ - && echo "Netpbm $(netpbm-version)" > $@ + if [ x$(on_mac_os) = xyes ]; then \ + answers='\n\n\n\n\n\n\n\n\n\n\n\nnone\n\n\n'; \ + else \ + answers='\n\n\n\ny\n\n\n\n\n\n\n\n\n\n\n\n\n'; \ + fi; \ + cd $(ddir) \ + && unpackdir=netpbm-$(netpbm-version) \ + && rm -rf $$unpackdir \ + && if ! tar xf $<; then echo; echo "Tar error"; exit 1; fi \ + && cd $$unpackdir \ + && printf "$$answers" | ./configure \ + && make \ + && rm -rf $(ddir)/$$unpackdir/install \ + && make package pkgdir=$(ddir)/$$unpackdir/install \ + && printf "$(ddir)/$$unpackdir/install\n$(idir)\n\n\nN\n\n\n\n\nN\n\n" \ + | ./installnetpbm \ + && cd .. \ + && rm -rf $$unpackdir \ + && echo "Netpbm $(netpbm-version)" > $@ # SCAMP documentation says ATLAS is a mandatory prerequisite for using # SCAMP. We have ATLAS into the project but there are some problems with the # libraries that are not yet solved. However, we tried to install it with # the option --enable-openblas and it worked (same issue happened with # `sextractor'. -$(ibidir)/scamp: $(tdir)/scamp-$(scamp-version).tar.lz \ - $(ibidir)/fftw \ - $(ibidir)/openblas \ - $(ibidir)/cdsclient - $(call gbuild, $<, scamp-$(scamp-version), static, \ - --enable-threads --enable-openblas \ - --with-fftw-libdir=$(idir) \ - --with-fftw-incdir=$(idir)/include \ - --with-openblas-libdir=$(ildir) \ - --with-openblas-incdir=$(idir)/include) \ - && cp $(dtexdir)/scamp.tex $(ictdir)/ \ +$(ibidir)/scamp: $(tdir)/scamp-$(scamp-version).tar.lz \ + $(ibidir)/cdsclient \ + $(ibidir)/openblas \ + $(ibidir)/fftw + $(call gbuild, $<, scamp-$(scamp-version), static, \ + --enable-threads --enable-openblas \ + --with-fftw-libdir=$(idir) \ + --with-fftw-incdir=$(idir)/include \ + --with-openblas-libdir=$(ildir) \ + --with-openblas-incdir=$(idir)/include) \ + && cp $(dtexdir)/scamp.tex $(ictdir)/ \ && echo "SCAMP $(scamp-version) \citep{scamp}" > $@ # Sextractor crashes complaining about not linking with some ATLAS @@ -636,27 +636,27 @@ $(ibidir)/scamp: $(tdir)/scamp-$(scamp-version).tar.lz \ # installed, it is just necessary to explicity tell sextractor to use it in # the configuration step. $(ibidir)/sextractor: $(tdir)/sextractor-$(sextractor-version).tar.lz \ - $(ibidir)/openblas \ + $(ibidir)/openblas \ $(ibidir)/fftw - $(call gbuild, $<, sextractor-$(sextractor-version), static, \ - --enable-threads --enable-openblas \ - --with-openblas-libdir=$(ildir) \ - --with-openblas-incdir=$(idir)/include) \ - && ln -fs $(ibdir)/sex $(ibdir)/sextractor \ - && cp $(dtexdir)/sextractor.tex $(ictdir)/ \ + $(call gbuild, $<, sextractor-$(sextractor-version), static, \ + --enable-threads --enable-openblas \ + --with-openblas-libdir=$(ildir) \ + --with-openblas-incdir=$(idir)/include) \ + && ln -fs $(ibdir)/sex $(ibdir)/sextractor \ + && cp $(dtexdir)/sextractor.tex $(ictdir)/ \ && echo "Sextractor $(sextractor-version) \citep{sextractor}" > $@ $(ibidir)/swarp: $(tdir)/swarp-$(swarp-version).tar.gz \ $(ibidir)/fftw $(call gbuild, $<, swarp-$(swarp-version), static, \ - --enable-threads) \ - && cp $(dtexdir)/swarp.tex $(ictdir)/ \ + --enable-threads) \ + && cp $(dtexdir)/swarp.tex $(ictdir)/ \ && echo "SWarp $(swarp-version) \citep{swarp}" > $@ $(ibidir)/swig: $(tdir)/swig-$(swig-version).tar.gz - # Option --without-pcre was a suggestion once the configure step was - # tried and it failed. It was not recommended but it works! - # pcr is a dependency of swig + # Option --without-pcre was a suggestion once the configure step + # was tried and it failed. It was not recommended but it works! + # pcr is a dependency of swig $(call gbuild, $<, swig-$(swig-version), static, --without-pcre) \ && echo "Swig $(swig-version)" > $@ @@ -746,11 +746,11 @@ $(itidir)/texlive: reproduce/software/config/installation/texlive.mk \ | awk '{print $$NF}'); # Package names and versions. - tlmgr info $(texlive-packages) --only-installed | awk \ - '$$1=="package:" {version=0; \ - if($$NF=="tex-gyre") name="texgyre"; \ - else name=$$NF} \ - $$1=="cat-version:" {version=$$NF} \ - $$1=="cat-date:" {if(version==0) version=$$2; \ + tlmgr info $(texlive-packages) --only-installed | awk \ + '$$1=="package:" {version=0; \ + if($$NF=="tex-gyre") name="texgyre"; \ + else name=$$NF} \ + $$1=="cat-version:" {version=$$NF} \ + $$1=="cat-date:" {if(version==0) version=$$2; \ printf("%s %s\n", name, version)}' >> $@ fi diff --git a/reproduce/software/make/python.mk b/reproduce/software/make/python.mk index ba811ba..4c407f6 100644 --- a/reproduce/software/make/python.mk +++ b/reproduce/software/make/python.mk @@ -58,46 +58,46 @@ export MPI_PYTHON3_SITEARCH := # convention, but include the name/version in their tarball names with # another format, we'll do the modification before the download so the # downloaded file has our desired format. -pytarballs = $(foreach t, asn1crypto-$(asn1crypto-version).tar.gz \ - astroquery-$(astroquery-version).tar.gz \ - astropy-$(astropy-version).tar.gz \ - beautifulsoup4-$(beautifulsoup4-version).tar.gz \ - certifi-$(certifi-version).tar.gz \ - cffi-$(cffi-version).tar.gz \ - chardet-$(chardet-version).tar.gz \ - cryptography-$(cryptography-version).tar.gz \ - cycler-$(cycler-version).tar.gz \ - cython-$(cython-version).tar.gz \ - entrypoints-$(entrypoints-version).tar.gz \ - h5py-$(h5py-version).tar.gz \ - html5lib-$(html5lib-version).tar.gz \ - idna-$(idna-version).tar.gz \ - jeepney-$(jeepney-version).tar.gz \ - kiwisolver-$(kiwisolver-version).tar.gz \ - keyring-$(keyring-version).tar.gz \ - libffi-$(libffi-version).tar.gz \ - matplotlib-$(matplotlib-version).tar.gz \ - mpi4py-$(mpi4py-version).tar.gz \ - mpmath-$(mpmath-version).tar.gz \ - numpy-$(numpy-version).zip \ - pkgconfig-$(pypkgconfig-version).tar.gz \ - pip-$(pip-version).tar.gz \ - pycparser-$(pycparser-version).tar.gz \ - python-$(python-version).tar.gz \ +pytarballs = $(foreach t, asn1crypto-$(asn1crypto-version).tar.gz \ + astroquery-$(astroquery-version).tar.gz \ + astropy-$(astropy-version).tar.gz \ + beautifulsoup4-$(beautifulsoup4-version).tar.gz \ + certifi-$(certifi-version).tar.gz \ + cffi-$(cffi-version).tar.gz \ + chardet-$(chardet-version).tar.gz \ + cryptography-$(cryptography-version).tar.gz \ + cycler-$(cycler-version).tar.gz \ + cython-$(cython-version).tar.gz \ + entrypoints-$(entrypoints-version).tar.gz \ + h5py-$(h5py-version).tar.gz \ + html5lib-$(html5lib-version).tar.gz \ + idna-$(idna-version).tar.gz \ + jeepney-$(jeepney-version).tar.gz \ + kiwisolver-$(kiwisolver-version).tar.gz \ + keyring-$(keyring-version).tar.gz \ + libffi-$(libffi-version).tar.gz \ + matplotlib-$(matplotlib-version).tar.gz \ + mpi4py-$(mpi4py-version).tar.gz \ + mpmath-$(mpmath-version).tar.gz \ + numpy-$(numpy-version).zip \ + pkgconfig-$(pypkgconfig-version).tar.gz \ + pip-$(pip-version).tar.gz \ + pycparser-$(pycparser-version).tar.gz \ + python-$(python-version).tar.gz \ python-dateutil-$(python-dateutil-version).tar.gz \ - pyparsing-$(pyparsing-version).tar.gz \ - requests-$(requests-version).tar.gz \ - scipy-$(scipy-version).tar.gz \ - secretstorage-$(secretstorage-version).tar.gz \ - setuptools-$(setuptools-version).zip \ - setuptools_scm-$(setuptools_scm-version).tar.gz \ - sip_tpv-$(sip_tpv-version).tar.gz \ - six-$(six-version).tar.gz \ - soupsieve-$(soupsieve-version).tar.gz \ - sympy-$(sympy-version).tar.gz \ - urllib3-$(urllib3-version).tar.gz \ - webencodings-$(webencodings-version).tar.gz \ - virtualenv-$(virtualenv-version).tar.gz \ + pyparsing-$(pyparsing-version).tar.gz \ + requests-$(requests-version).tar.gz \ + scipy-$(scipy-version).tar.gz \ + secretstorage-$(secretstorage-version).tar.gz \ + setuptools-$(setuptools-version).zip \ + setuptools_scm-$(setuptools_scm-version).tar.gz \ + sip_tpv-$(sip_tpv-version).tar.gz \ + six-$(six-version).tar.gz \ + soupsieve-$(soupsieve-version).tar.gz \ + sympy-$(sympy-version).tar.gz \ + urllib3-$(urllib3-version).tar.gz \ + webencodings-$(webencodings-version).tar.gz \ + virtualenv-$(virtualenv-version).tar.gz \ , $(tdir)/$(t) ) pytopurl=https://files.pythonhosted.org/packages $(pytarballs): $(tdir)/%: @@ -225,22 +225,22 @@ $(ibidir)/libffi: $(tdir)/libffi-$(libffi-version).tar.gz $(ibidir)/python: $(tdir)/python-$(python-version).tar.gz \ $(ibidir)/libffi - # On Mac systems, the build complains about `clang' specific - # features, so we can't use our own GCC build here. - if [ x$(on_mac_os) = xyes ]; then \ - export CC=clang; \ - export CXX=clang++; \ - fi; \ - $(call gbuild, $<, Python-$(python-version),, \ - --without-ensurepip \ - --with-system-ffi \ - --enable-shared) \ + # On Mac systems, the build complains about `clang' specific + # features, so we can't use our own GCC build here. + if [ x$(on_mac_os) = xyes ]; then \ + export CC=clang; \ + export CXX=clang++; \ + fi; \ + $(call gbuild, $<, Python-$(python-version),, \ + --without-ensurepip \ + --with-system-ffi \ + --enable-shared) \ && v=$$(echo $(python-version) | awk 'BEGIN{FS="."} \ - {printf "%d.%d\n", $$1, $$2}') \ - && ln -sf $(ildir)/python$$v $(ildir)/python \ - && ln -sf $(ibdir)/python$$v $(ibdir)/python \ - && rm -rf $(ipydir) \ - && mkdir $(ipydir) \ + {printf "%d.%d\n", $$1, $$2}') \ + && ln -sf $(ildir)/python$$v $(ildir)/python \ + && ln -sf $(ibdir)/python$$v $(ibdir)/python \ + && rm -rf $(ipydir) \ + && mkdir $(ipydir) \ && echo "Python $(python-version)" > $@ @@ -258,18 +258,18 @@ $(ibidir)/python: $(tdir)/python-$(python-version).tar.gz \ # 3) Unpacked directory name after unpacking the tarball # 4) site.cfg file (optional) # 5) Official software name.(for paper). -pybuild = cd $(ddir); rm -rf $(3); \ +pybuild = cd $(ddir); rm -rf $(3); \ if ! $(1) $(2); then echo; echo "Tar error"; exit 1; fi; \ - cd $(3); \ - if [ "x$(strip $(4))" != x ]; then \ - sed -e 's|@LIBDIR[@]|'"$(ildir)"'|' \ - -e 's|@INCDIR[@]|'"$(idir)/include"'|' \ - $(4) > site.cfg; \ - fi; \ - python setup.py build \ - && python setup.py install \ - && cd .. \ - && rm -rf $(3) \ + cd $(3); \ + if [ "x$(strip $(4))" != x ]; then \ + sed -e 's|@LIBDIR[@]|'"$(ildir)"'|' \ + -e 's|@INCDIR[@]|'"$(idir)/include"'|' \ + $(4) > site.cfg; \ + fi; \ + python setup.py build \ + && python setup.py install \ + && cd .. \ + && rm -rf $(3) \ && echo "$(5)" > $@ @@ -285,22 +285,22 @@ $(ipydir)/asn1crypto: $(tdir)/asn1crypto-$(asn1crypto-version).tar.gz \ $(call pybuild, tar xf, $<, asn1crypto-$(asn1crypto-version), , \ Asn1crypto $(asn1crypto-version)) -$(ipydir)/astroquery: $(tdir)/astroquery-$(astroquery-version).tar.gz \ - $(ipydir)/beautifulsoup4 \ - $(ipydir)/html5lib \ - $(ipydir)/requests \ - $(ipydir)/astropy \ - $(ipydir)/keyring \ +$(ipydir)/astroquery: $(tdir)/astroquery-$(astroquery-version).tar.gz \ + $(ipydir)/beautifulsoup4 \ + $(ipydir)/html5lib \ + $(ipydir)/requests \ + $(ipydir)/astropy \ + $(ipydir)/keyring \ $(ipydir)/numpy $(call pybuild, tar xf, $<, astroquery-$(astroquery-version), ,\ Astroquery $(astroquery-version)) $(ipydir)/astropy: $(tdir)/astropy-$(astropy-version).tar.gz \ - $(ipydir)/h5py \ - $(ipydir)/numpy \ + $(ipydir)/h5py \ + $(ipydir)/numpy \ $(ipydir)/scipy $(call pybuild, tar xf, $<, astropy-$(astropy-version)) \ - && cp $(dtexdir)/astropy.tex $(ictdir)/ \ + && cp $(dtexdir)/astropy.tex $(ictdir)/ \ && echo "Astropy $(astropy-version) \citep{astropy2013,astropy2018}" > $@ $(ipydir)/beautifulsoup4: $(tdir)/beautifulsoup4-$(beautifulsoup4-version).tar.gz \ @@ -314,8 +314,8 @@ $(ipydir)/certifi: $(tdir)/certifi-$(certifi-version).tar.gz \ Certifi $(certifi-version)) $(ipydir)/cffi: $(tdir)/cffi-$(cffi-version).tar.gz \ - $(ibidir)/libffi \ - $(ipydir)/pycparser + $(ipydir)/pycparser \ + $(ibidir)/libffi $(call pybuild, tar xf, $<, cffi-$(cffi-version), ,\ cffi $(cffi-version)) @@ -325,7 +325,7 @@ $(ipydir)/chardet: $(tdir)/chardet-$(chardet-version).tar.gz \ Chardet $(chardet-version)) $(ipydir)/cryptography: $(tdir)/cryptography-$(cryptography-version).tar.gz \ - $(ipydir)/asn1crypto \ + $(ipydir)/asn1crypto \ $(ipydir)/cffi $(call pybuild, tar xf, $<, cryptography-$(cryptography-version), ,\ Cryptography $(cryptography-version)) @@ -338,7 +338,7 @@ $(ipydir)/cycler: $(tdir)/cycler-$(cycler-version).tar.gz \ $(ipydir)/cython: $(tdir)/cython-$(cython-version).tar.gz \ $(ipydir)/setuptools $(call pybuild, tar xf, $<, Cython-$(cython-version)) \ - && cp $(dtexdir)/cython.tex $(ictdir)/ \ + && cp $(dtexdir)/cython.tex $(ictdir)/ \ && echo "Cython $(cython-version) \citep{cython2011}" > $@ $(ipydir)/entrypoints: $(tdir)/entrypoints-$(entrypoints-version).tar.gz \ @@ -347,19 +347,19 @@ $(ipydir)/entrypoints: $(tdir)/entrypoints-$(entrypoints-version).tar.gz \ EntryPoints $(entrypoints-version)) $(ipydir)/h5py: $(tdir)/h5py-$(h5py-version).tar.gz \ - $(ibidir)/hdf5 \ - $(ipydir)/cython \ - $(ipydir)/pypkgconfig \ - $(ipydir)/setuptools + $(ipydir)/pypkgconfig \ + $(ipydir)/setuptools \ + $(ipydir)/cython \ + $(ibidir)/hdf5 #$(ipydir)/mpi4py # AFTER its problem is fixed. - #export HDF5_MPI=ON; # AFTER its problem is fixed. - export HDF5_DIR=$(ildir); \ + #export HDF5_MPI=ON; # AFTER its problem is fixed. + export HDF5_DIR=$(ildir); \ $(call pybuild, tar xf, $<, h5py-$(h5py-version), ,\ h5py $(h5py-version)) $(ipydir)/html5lib: $(tdir)/html5lib-$(html5lib-version).tar.gz \ - $(ipydir)/six \ - $(ipydir)/webencodings + $(ipydir)/webencodings \ + $(ipydir)/six $(call pybuild, tar xf, $<, html5lib-$(html5lib-version), ,\ HTML5lib $(html5lib-version)) @@ -373,27 +373,27 @@ $(ipydir)/jeepney: $(tdir)/jeepney-$(jeepney-version).tar.gz \ $(call pybuild, tar xf, $<, jeepney-$(jeepney-version), ,\ Jeepney $(jeepney-version)) -$(ipydir)/keyring: $(tdir)/keyring-$(keyring-version).tar.gz \ - $(ipydir)/entrypoints \ - $(ipydir)/secretstorage \ - $(ipydir)/setuptools_scm +$(ipydir)/keyring: $(tdir)/keyring-$(keyring-version).tar.gz \ + $(ipydir)/setuptools_scm \ + $(ipydir)/secretstorage \ + $(ipydir)/entrypoints $(call pybuild, tar xf, $<, keyring-$(keyring-version), ,\ Keyring $(keyring-version)) -$(ipydir)/kiwisolver: $(tdir)/kiwisolver-$(kiwisolver-version).tar.gz \ +$(ipydir)/kiwisolver: $(tdir)/kiwisolver-$(kiwisolver-version).tar.gz \ $(ipydir)/setuptools $(call pybuild, tar xf, $<, kiwisolver-$(kiwisolver-version), ,\ Kiwisolver $(kiwisolver-version)) -$(ipydir)/matplotlib: $(tdir)/matplotlib-$(matplotlib-version).tar.gz \ - $(ipydir)/cycler \ - $(ibidir)/freetype \ - $(ipydir)/kiwisolver \ - $(ipydir)/numpy \ - $(ipydir)/pyparsing \ - $(ipydir)/python-dateutil +$(ipydir)/matplotlib: $(tdir)/matplotlib-$(matplotlib-version).tar.gz \ + $(ipydir)/python-dateutil \ + $(ipydir)/kiwisolver \ + $(ipydir)/pyparsing \ + $(ibidir)/freetype \ + $(ipydir)/cycler \ + $(ipydir)/numpy $(call pybuild, tar xf, $<, matplotlib-$(matplotlib-version)) \ - && cp $(dtexdir)/matplotlib.tex $(ictdir)/ \ + && cp $(dtexdir)/matplotlib.tex $(ictdir)/ \ && echo "Matplotlib $(matplotlib-version) \citep{matplotlib2007}" > $@ # Currently mpi4py doesn't build because of some conflict with OpenMPI: @@ -406,10 +406,10 @@ $(ipydir)/matplotlib: $(tdir)/matplotlib-$(matplotlib-version).tar.gz \ # # But atleast on my system it fails. $(ipydir)/mpi4py: $(tdir)/mpi4py-$(mpi4py-version).tar.gz \ - $(ipydir)/setuptools \ + $(ipydir)/setuptools \ $(ibidir)/openmpi $(call pybuild, tar xf, $<, mpi4py-$(mpi4py-version)) \ - && cp $(dtexdir)/mpi4py.tex $(ictdir)/ \ + && cp $(dtexdir)/mpi4py.tex $(ictdir)/ \ && echo "mpi4py $(mpi4py-version) \citep{mpi4py2011}" > $@ $(ipydir)/mpmath: $(tdir)/mpmath-$(mpmath-version).tar.gz \ @@ -418,18 +418,18 @@ $(ipydir)/mpmath: $(tdir)/mpmath-$(mpmath-version).tar.gz \ mpmath $(mpmath-version)) $(ipydir)/numpy: $(tdir)/numpy-$(numpy-version).zip \ - $(ipydir)/setuptools \ - $(ibidir)/openblas \ + $(ipydir)/setuptools \ + $(ibidir)/openblas \ $(ibidir)/unzip - if [ x$(on_mac_os) = xyes ]; then \ - export LDFLAGS="$(LDFLAGS) -undefined dynamic_lookup -bundle"; \ - else \ - export LDFLAGS="$(LDFLAGS) -shared"; \ - fi; \ + if [ x$(on_mac_os) = xyes ]; then \ + export LDFLAGS="$(LDFLAGS) -undefined dynamic_lookup -bundle"; \ + else \ + export LDFLAGS="$(LDFLAGS) -shared"; \ + fi; \ conf="$$(pwd)/reproduce/software/config/installation/numpy-scipy.cfg"; \ - $(call pybuild, unzip, $<, numpy-$(numpy-version),$$conf, \ - Numpy $(numpy-version)) \ - && cp $(dtexdir)/numpy.tex $(ictdir)/ \ + $(call pybuild, unzip, $<, numpy-$(numpy-version),$$conf, \ + Numpy $(numpy-version)) \ + && cp $(dtexdir)/numpy.tex $(ictdir)/ \ && echo "Numpy $(numpy-version) \citep{numpy2011}" > $@ $(ibidir)/pip3: $(tdir)/pip-$(pip-version).tar.gz \ @@ -453,40 +453,40 @@ $(ipydir)/pyparsing: $(tdir)/pyparsing-$(pyparsing-version).tar.gz \ PyParsing $(pyparsing-version)) $(ipydir)/python-dateutil: $(tdir)/python-dateutil-$(python-dateutil-version).tar.gz \ - $(ipydir)/setuptools_scm \ + $(ipydir)/setuptools_scm \ $(ipydir)/six $(call pybuild, tar xf, $<, python-dateutil-$(python-dateutil-version), ,\ python-dateutil $(python-dateutil-version)) -$(ipydir)/requests: $(tdir)/requests-$(requests-version).tar.gz \ - $(ipydir)/certifi \ - $(ipydir)/chardet \ - $(ipydir)/idna \ - $(ipydir)/numpy \ - $(ipydir)/urllib3 +$(ipydir)/requests: $(tdir)/requests-$(requests-version).tar.gz \ + $(ipydir)/certifi \ + $(ipydir)/chardet \ + $(ipydir)/urllib3 \ + $(ipydir)/numpy \ + $(ipydir)/idna $(call pybuild, tar xf, $<, requests-$(requests-version), ,\ Requests $(requests-version)) $(ipydir)/scipy: $(tdir)/scipy-$(scipy-version).tar.gz \ $(ipydir)/numpy - if [ x$(on_mac_os) = xyes ]; then \ - export LDFLAGS="$(LDFLAGS) -undefined dynamic_lookup -bundle"; \ - else \ - export LDFLAGS="$(LDFLAGS) -shared"; \ - fi; \ + if [ x$(on_mac_os) = xyes ]; then \ + export LDFLAGS="$(LDFLAGS) -undefined dynamic_lookup -bundle"; \ + else \ + export LDFLAGS="$(LDFLAGS) -shared"; \ + fi; \ conf="$$(pwd)/reproduce/software/config/installation/numpy-scipy.cfg"; \ - $(call pybuild, tar xf, $<, scipy-$(scipy-version),$$conf) \ - && cp $(dtexdir)/scipy.tex $(ictdir)/ \ + $(call pybuild, tar xf, $<, scipy-$(scipy-version),$$conf) \ + && cp $(dtexdir)/scipy.tex $(ictdir)/ \ && echo "Scipy $(scipy-version) \citep{scipy2007,scipy2011}" > $@ $(ipydir)/secretstorage: $(tdir)/secretstorage-$(secretstorage-version).tar.gz \ - $(ipydir)/cryptography \ + $(ipydir)/cryptography \ $(ipydir)/jeepney $(call pybuild, tar xf, $<, SecretStorage-$(secretstorage-version), ,\ SecretStorage $(secretstorage-version)) $(ipydir)/setuptools: $(tdir)/setuptools-$(setuptools-version).zip \ - $(ibidir)/python \ + $(ibidir)/python \ $(ibidir)/unzip $(call pybuild, unzip, $<, setuptools-$(setuptools-version), ,\ Setuptools $(setuptools-version)) @@ -497,10 +497,10 @@ $(ipydir)/setuptools_scm: $(tdir)/setuptools_scm-$(setuptools_scm-version).tar.g Setuptools-scm $(setuptools_scm-version)) $(ipydir)/sip_tpv: $(tdir)/sip_tpv-$(sip_tpv-version).tar.gz \ - $(ipydir)/mpmath \ + $(ipydir)/mpmath \ $(ipydir)/sympy $(call pybuild, tar xf, $<, sip_tpv-$(sip_tpv-version), ,) \ - && cp $(dtexdir)/sip_tpv.tex $(ictdir)/ \ + && cp $(dtexdir)/sip_tpv.tex $(ictdir)/ \ && echo "sip\_tpv $(sip_tpv-version) \citep{sip-tpv}" > $@ @@ -514,11 +514,11 @@ $(ipydir)/soupsieve: $(tdir)/soupsieve-$(soupsieve-version).tar.gz \ $(call pybuild, tar xf, $<, soupsieve-$(soupsieve-version), ,\ SoupSieve $(soupsieve-version)) -$(ipydir)/sympy: $(tdir)/sympy-$(sympy-version).tar.gz \ - $(ipydir)/mpmath \ - $(ipydir)/setuptools +$(ipydir)/sympy: $(tdir)/sympy-$(sympy-version).tar.gz \ + $(ipydir)/setuptools \ + $(ipydir)/mpmath $(call pybuild, tar xf, $<, sympy-$(sympy-version), ,) \ - && cp $(dtexdir)/sympy.tex $(ictdir)/ \ + && cp $(dtexdir)/sympy.tex $(ictdir)/ \ && echo "SymPy $(sympy-version) \citep{sympy}" > $@ $(ipydir)/urllib3: $(tdir)/urllib3-$(urllib3-version).tar.gz \ |