IMPORTANT!!! Configuration Makefiles now have a .conf suffix

Until now, the configuration Makefiles (in
`reproduce/software/config/installation' and `reproduce/analysis/config')
had a `.mk' suffix, similar to the workhorse Makefiles. Although they are
indeed Makefiles, but given their nature (to only keep configuration
parameters), it is confusing (especially to early users) for them to also
have a `.mk' (similar to the analysis or software building Makefiles).

To address this issue, with this commit, all the configuration Makefiles
(in those directories) are now given a `.conf' suffix. This is also assumed
for all the files that are loaded.

The configuration (software building) and running of the template have been
checked with this change from scratch, but please report any error that may
not have been noticed.

THIS IS AN IMPORTANT CHANGE AND WILL CAUSE CRASHES OR UNEXPECTED BEHAVIORS
FOR PROJECTS THAT HAVE BRANCHED FROM THIS TEMPLATE. PLEASE CORRECT THE
SUFFIX OF ALL YOUR PROJECT'S CONFIGURATION MAKEFILES (IN THE DIRECTORIES
ABOVE), OTHERWISE THEY AREN'T AUTOMATICALLY LOADED ANYMORE.

1 files changed, 214 insertions, 0 deletions

diff --git a/reproduce/software/config/installation/versions.conf b/reproduce/software/config/installation/versions.conf
new file mode 100644
index 0000000..565f1a4
--- /dev/null
+++ b/reproduce/software/config/installation/versions.conf
@@ -0,0 +1,214 @@
+# Versions of the various dependencies
+#
+# Copyright (C) 2018-2020 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+# Copyright (C) 2019-2020 Raul Infante-Sainz <infantesainz@gmail.com>
+#
+# This Makefile is free software: you can redistribute it and/or modify it
+# under the terms of the GNU General Public License as published by the
+# Free Software Foundation, either version 3 of the License, or (at your
+# option) any later version.
+#
+# This Makefile is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General
+# Public License for more details.
+#
+# A copy of the GNU General Public License is available at
+# <http://www.gnu.org/licenses/>.
+
+
+
+
+
+# Basic/low-level programs and libraires (installed in any case)
+# --------------------------------------------------------------
+bash-version = 5.0.11
+binutils-version = 2.32
+coreutils-version = 8.31
+curl-version = 7.65.3
+diffutils-version = 3.7
+file-version = 5.36
+findutils-version = 4.7.0
+gawk-version = 5.0.1
+gcc-version = 9.2.0
+git-version = 2.23.0
+gmp-version = 6.1.2
+grep-version = 3.3
+gzip-version = 1.10
+isl-version = 0.18
+libbsd-version = 0.9.1
+libiconv-version = 1.16
+libtool-version = 2.4.6
+lzip-version= 1.20
+m4-version = 1.4.18
+make-version = 4.3
+metastore-version = 1.1.2-23-fa9170b
+mpc-version = 1.1.0
+mpfr-version = 4.0.2
+ncurses-version = 6.1
+openssl-version = 1.1.1a
+patchelf-version = 0.10
+perl-version = 5.30.0
+pkgconfig-version = 0.29.2
+readline-version = 8.0
+sed-version = 4.7
+tar-version = 1.32
+texinfo-version = 6.6
+unzip-version = 6.0
+wget-version = 1.20.3
+which-version = 2.21
+xz-version = 5.2.4
+zip-version = 3.0
+zlib-version = 1.2.11
+
+
+
+
+
+# Optional/high-level programs and libraries
+# ------------------------------------------
+#
+# These are programs and libraries that are optional, The ones in
+# `reproduce/software/config/installation/TARGETS.conf' will be built as
+# part of a project. To specify a software there, just remove the
+# `-version' suffix from the list below.
+apachelog4cxx-version = 0.10.0-603-014954db
+apr-version = 1.7.0
+apr-util-version = 1.6.1
+astrometrynet-version = 0.77
+atlas-version = 3.10.3
+autoconf-version = 2.69.200-babc
+automake-version = 1.16.1
+bison-version = 3.4.2
+boost-version = 1.71.0
+cairo-version = 1.16.0
+cdsclient-version = 3.84
+cfitsio-version = 3.47
+cmake-version = 3.15.3
+eigen-version = 3.3.7
+fftw-version = 3.3.8
+flex-version = 2.6.4
+flock-version = 0.2.3
+freetype-version = 2.9
+gdb-version = 8.3
+ghostscript-version = 9.50
+gnuastro-version = 0.11
+gsl-version = 2.6
+hdf5-version = 1.10.5
+healpix-version = 3.50
+help2man-version = 1.47.11
+imagemagick-version = 7.0.8-67
+imfit-version = 1.6.1
+libffi-version = 3.2.1
+libjpeg-version = v9b
+libnsl-version = 1.2.0-4a062cf
+libpng-version = 1.6.37
+libtiff-version = 4.0.10
+libtirpc-version = 1.1.4
+libxml2-version = 2.9.9
+openblas-version = 0.3.5
+openmpi-version = 4.0.1
+openssh-version = 8.0p1
+pixman-version = 0.38.0
+python-version = 3.7.4
+R-version = 3.6.2
+rpcsvc-proto-version = 1.4
+scamp-version = 2.6.7
+scons-version = 3.0.5
+sextractor-version = 2.25.0
+swarp-version = 2.38.0
+swig-version = 3.0.12
+tides-version = 2.0
+yaml-version = 0.2.2
+
+
+
+
+
+# Python packages
+# ---------------
+#
+# Similar to optional programs and libraries above.
+#
+# IMPORTANT: If you intend to change the version of any of the Python
+# modules/libraries below, please fix the hash strings of the respective
+# URL in `reproduce/software/make/python.mk'.
+asn1crypto-version = 0.24.0
+asteval-version = 0.9.16
+astropy-version = 4.0
+astroquery-version = 0.3.9
+beautifulsoup4-version = 4.7.1
+certifi-version = 2018.11.29
+cffi-version = 1.12.2
+chardet-version = 3.0.4
+corner-version = 2.0.1
+cryptography-version = 2.6.1
+cycler-version = 0.10.0
+cython-version = 0.29.6
+eigency-version = 1.77
+emcee-version = 3.0.1
+entrypoints-version = 0.3
+esutil-version = 0.6.4
+flake8-version = 3.7.8
+future-version = 0.18.1
+galsim-version = 2.2.1
+h5py-version = 2.9.0
+healpy-version = installed-with-healpix
+html5lib-version = 1.0.1
+idna-version = 2.8
+jeepney-version = 0.4
+keyring-version = 18.0.0
+kiwisolver-version = 1.0.1
+lmfit-version = 0.9.14
+lsstdesccoord-version = 1.2.0
+matplotlib-version = 3.1.1
+mpi4py-version = 3.0.2
+mpmath-version = 1.1.0
+numpy-version = 1.17.2
+pexpect-version = 4.7.0
+pip-version = 19.0.2
+pycodestyle-version = 2.5.0
+pycparser-version = 2.19
+pyflakes-version = 2.1.1
+pybind11-version = 2.4.3
+pyparsing-version = 2.3.1
+pypkgconfig-version = 1.5.1
+python-dateutil-version = 2.8.0
+pyyaml-version = 5.1
+requests-version = 2.21.0
+scipy-version = 1.3.1
+secretstorage-version = 3.1.1
+setuptools-version = 41.6.0
+setuptools_scm-version = 3.3.3
+sip_tpv-version = 1.1
+six-version = 1.12.0
+soupsieve-version = 1.8
+sympy-version = 1.4
+uncertainties-version = 3.1.2
+urllib3-version = 1.24.1
+virtualenv-version = 16.4.0
+webencodings-version = 0.5.1
+
+
+
+
+
+# Special programs and libraries
+# ------------------------------
+#
+# When updating the version of these libraries, please look into the build
+# rule first: In one way or another, the version string becomes necessary
+# during their build and must be accounted for.
+#
+# Special notes:
+#   - `netpbm' questions in the configure steps maybe change with different
+#   or new versions.
+
+# Basic/low-level
+bzip2-version = 1.0.6
+
+# Optional/high-level
+lapack-version = 3.8.0
+libgit2-version = 0.28.2
+netpbm-version = 10.86.99
+wcslib-version = 6.4