paper-concept.git - Paper (Towards Long-term and Archivable Reproducibility)

Age	Commit message (Collapse)	Author	Lines
2019-03-07	Several new Python packages added for full build	Mohammad Akhlaghi	-12/+70
	To ensure that we have all the necessary Python dependencies, I done an offline build and noticed that several packages were also necessary for the `./configure' step to finish (`libffi', `asn1crypto', `cffi', `jeepney', `pycparser' and `secretstorage'). With this commit they are added.
2019-03-06	Reseting Python environment variables also when building Python	Mohammad Akhlaghi	-1/+20
	Until now, we were only resetting the Python environment variables in the actual processing Makefiles, not in the Makefile that build Python and its modules. They are now added there also.
2019-03-06	Astroquery, astropy, matplotlib and numpy are now in the pipeline	Raul Infante-Sainz	-0/+1
	Until this commit, we had some of the python packages intalled but they did not work properly because of the `PYTHONPATH' variables. That is, the pipeline's `python' was the `python' of the system instead of the pipeline's `python'. With this commit this issue has been fixed by setting the correct `PYTHONPATH'. In this commit we also modify the installation of `bzip2' because `CMake' was complaining about some libraries built statically.
2019-02-28	Python installation and related packages have been split	Raul Infante-Sainz	-1/+13
	Until now the installation of Python and its packages (numpy, astropy, astroquery, etc.) were done in the same `makefile'. With this commit the installation of Python and its packages have been split and now it is independent of the other programs. The installation of all Python packages needs to be written explicitely because pip is not used anymore.
2019-02-21	Matplotlib is now in the pipeline	Raul Infante-Sainz	-5/+63
	As matplotlib is a general package for plotting and it is widely used in science, we have added it to the pipeline. When installing a dependency of matplotlib `python-dateutil', we found a conflict in the download of the tarball. This is because the name has a dash (-) in the middle. In addition, the name starts with 'python', so it is the same as the python itself. Now it is possible to install any package with any name, just adding an elif in before the URL direction.
2019-02-20	Installed astroquery in the pipeline	Raul Infante-Sainz	-0/+294
	All dependencies for building astroquery package have been done. Until nowthe Python dependencies were built in the same Makefile as the high level libraries and programs. But, because astroquery has many dependencies we split the Python and Python packages installation in a new Makefile. The installation of differents packages are done using Python and not pip, because we found some problems when doing it with pip. Apparently there are some interferences between the packages installed by the pip of the system and the pip installed as part of Python in the pipeline.