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Due to the copy/paste of rules from other files, in some rules there
were some spaces insteand of tab. There were also a lack of semicolon in
the building of CC, and bad extensions in various tarballs.
With this commit, all of these typos have been fixed.
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Until now, we did not have CC. This is an obsolete way of calling C
Compiler, nowadays it is GCC. However, there could be some software
that is still using this convention (for example, `netpbm').
With this commit, we make the symbolic link `cc' pointing to the
installed `gcc'.
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Until now, the software building and analysis steps of the pipeline were
intertwined. However, these steps (of how to build a software, and how to
use it) are logically completely independent.
Therefore with this commit, the pipeline now has a new architecture
(particularly in the `reproduce' directory) to emphasize this distinction:
The `reproduce' directory now has the two `software' and `analysis'
subdirectories and the respective parts of the previous architecture have
been broken up between these two based on their function. There is also no
more `src' directory. The `config' directory for software and analysis is
now mixed with the language-specific directories.
Also, some of the software versions were also updated after some checks
with their webpages.
This new architecture will allow much more focused work on each part of the
pipeline (to install the software and to run them for an analysis).
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