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After doing a systematic search for files without a copyright notice, a few
more were found that didn't have a notice. So a notice was added for them.
I used this Bash command to find the files:
for f in $(find ./ -type f); do \
if [[ $f != *.git* ]]; then \
n=$(grep -i copyright $f | wc -l); \
echo "$n $f"; \
fi; \
done | awk '$1==0'
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To be more easy to read/understand, the comments in `.dir-locals.el' were
edited and made a little more elaborate.
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Previously we had tried to corrected the problem that `.mk' files use space
instead of TAB by setting them to be read into makefile-mode at the
start. However, for some reason, this caused a problem in reading the
maximum line length (the value of 75 wasn't read by Emacs).
So after some playing around, I found out that the problem is that the
`nil' setting (for all other files) must be defined in the end, not the
start of the basic settings and this solved this problem.
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Since version 26.1, apparently Emacs doesn't tream `.mk' files in
Makefile-mode. So thanks to Mosè Giordano, a line was added in the
`.dir-locals.el' file so we can be sure they are always treated as
Makefiles and make things more convenient for Emacs users.
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Let's start working on this pipeline independently with this first
commit. It is based on my previous experiences, but I had never made a
skeleton of a pipeline before, it was always within a working analysis.
But now that the pipeline has a separate repository for its self, we will
be able to work on it and use it as a base for future work and modify it to
make it even better. Hopefully in time (and with the help of others), it
will grow and become much more robust and useful.
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