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+%% The top-level file to build the separate supplement that contains the
+%% appendices (to be published as a separate PDF file).
+%
+%% Copyright (C) 2020-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+%% Copyright (C) 2020-2022 Boudewijn F. Roukema <boud@astro.uni.torun.pl>
+%
+%% This file is free software: you can redistribute it and/or modify it
+%% under the terms of the GNU General Public License as published by the
+%% Free Software Foundation, either version 3 of the License, or (at your
+%% option) any later version.
+%
+%% This file is distributed in the hope that it will be useful, but WITHOUT
+%% ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+%% FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+%% for more details. See <http://www.gnu.org/licenses/>.
+\documentclass[journal]{IEEEtran}
+
+%% This is a convenience variable if you are using PGFPlots to build plots
+%% within LaTeX. If you want to import PDF files for figures directly, you
+%% can use the standard `\includegraphics' command. See the definition of
+%% `\includetikz' in `tex/preamble-pgfplots.tex' for where the files are
+%% assumed to be if you use `\includetikz' when `\makepdf' is not defined.
+\newcommand{\makepdf}{}
+
+%% VALUES FROM ANALYSIS (NUMBERS AND STRINGS): this file is automatically
+%% generated at the end of the processing and includes LaTeX macros
+%% (defined with '\newcommand') for various processing outputs to be used
+%% within the paper.
+\input{tex/build/macros/project.tex}
+\input{tex/src/preamble-maneage.tex}
+
+%% Import the other necessary TeX files for this particular project.
+\input{tex/src/preamble-project.tex}
+
+%% Title and author names.
+\title{\textsc{\LARGE Supplemental appendices for paper:}\\ \emph{\projecttitle}}
+\author{
+  Mohammad Akhlaghi,
+  Ra\'ul Infante-Sainz,
+  Boudewijn F. Roukema,
+  Mohammadreza Khellat,\\
+  David Valls-Gabaud,
+  Roberto Baena-Gall\'e\\
+  \footnotesize{Manuscript received June 5th, 2020; accepted April 7th, 2021; first published by CiSE April 13th, 2021}
+}
+
+%% The paper headers
+\markboth{Computing in Science and Engineering, Vol. 23, Issue 3, Pages 82--91, 2021: \href{https://doi.org/10.1109/MCSE.2021.3072860}{DOI:10.1109/MCSE.2021.3072860}, arXiv:2006.03018, \href{https://doi.org/10.5281/zenodo.\projectzenodoid}{zenodo.\projectzenodoid}}%
+{Akhlaghi \MakeLowercase{\textit{et al.}}: \projecttitle}
+
+
+
+
+
+
+
+
+
+
+%% Start the paper.
+\begin{document}
+
+% make the title area
+\maketitle
+
+% For peer review papers, you can put extra information on the cover
+% page as needed:
+% \ifCLASSOPTIONpeerreview
+% \begin{center} \bfseries EDICS Category: 3-BBND \end{center}
+% \fi
+%
+% For peerreview papers, this IEEEtran command inserts a page break and
+% creates the second title. It will be ignored for other modes.
+\IEEEpeerreviewmaketitle
+
+%% A short appendix describing this file.
+\begin{abstract}
+  This supplement contains appendices to the main body of Akhlaghi et al., published in CiSE (\href{https://doi.org/10.1109/MCSE.2021.3072860}{DOI:10.1109/MCSE.2021.3072860}, available as a preprint at \href{https://arxiv.org/abs/\projectarxivid}{\texttt{arXiv:\projectarxivid}} or \href{https://doi.org/10.5281/zenodo.\projectzenodoid}{\texttt{zenodo.\projectzenodoid}}).
+  In the paper's main body we introduced criteria for longevity of reproducible workflow solutions and introduced a proof of concept that implements them, called Maneage (\emph{Man}aging data lin\emph{eage}).
+  This supplement provides an in-depth literature review of previous methods and compares them and their lower-level tools in detail with our criteria and with the proof of concept presented in this work.
+  Appendix \ref{appendix:existingtools} reviews the low-level tools that are used by many reproducible workflow solutions (including our proof of concept).
+  Appendix \ref{appendix:existingsolutions} reviews many solutions that attempt(ed) reproducible management of workflows (including solutions that have stopped development, or worse, are no longer available online).
+  To highlight the evolving landscape and its effects on longevity, Appendix \ref{appendix:existingsolutions}  discusses the solutions in historical order.
+  Finally, in Appendix \ref{appendix:software} an automatically generated, exhaustive list of software used to build this project is included with the software versions indicated.
+  This supplement was built from project commit \projectversion.
+\end{abstract}
+
+%% Import the appendices.
+\appendices
+\input{tex/src/appendix-existing-tools.tex}
+\input{tex/src/appendix-existing-solutions.tex}
+\input{tex/src/appendix-used-software.tex}
+
+%% Bibliography.
+\bibliographystyle{IEEEtran_openaccess}
+\bibliography{IEEEabrv,references}
+
+%% End the paper.
+\end{document}