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% Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org>
%
% This LaTeX source is free software: you can redistribute it and/or
% modify it under the terms of the GNU General Public License as
% published by the Free Software Foundation, either version 3 of the
% License, or (at your option) any later version.
%
% This LaTeX source is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
% General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with this LaTeX source. If not, see <https://www.gnu.org/licenses/>.
\small
\Wider[5em]{
\begin{center}
\vspace{-3mm}
\begin{tikzpicture}[>=stealth, thick, black!50, text=black,
every new ->/.style={shorten >=1pt},
hv path/.style={to path={-| (\tikztotarget)}},
graphs/every graph/.style={edges=rounded corners}]
%% This white line is only added to fix the vertical position of the
%% figure so it doesn't change as we add more boxes.
\draw [white] (0,-4.3) -- (0,3.8);
\draw [white] (-0.5,0) -- (12,0);
%% Box showing containers.
\ifdefined\containers
\filldraw[YellowOrange!20!white, rounded corners=2mm] (-0.1,0.3) rectangle (5.6,3.8);
\draw (-0.1,3.6) node [anchor=west] {\scriptsize Existing solutions:};
\draw (0.1,3.3) node [anchor=west] {\scriptsize Virtual machines};
\draw (0.1,3.0) node [anchor=west] {\scriptsize Containers (e.g., Docker)};
\draw (0.1,2.7) node [anchor=west] {\scriptsize OSs (e.g., Nix, GNU Guix)};
\fi
\graph[grow right sep, simple] {
{ [nodes={yshift=7mm}]
soft/Software [gbox] -> build/Build [bbox],
hard/Hardware/data [gbox, yshift=-0.5cm] --
p1 [coordinate, xshift=2cm, yshift=-0.5cm]
} -- [hv path]
p2 [coordinate] ->
srun/Run software on data [bbox] ->
paper/Paper [bbox]
};
\ifdefined\paperfinal
\node (happy) [inner sep=0pt, below=of paper, yshift=+8mm]
{\includegraphics[width=2cm]{img/happy-question.jpg}};
\node (happyurl) [below=of happy, xshift=-9.5mm, yshift=+1cm]
{\tiny \url{https://heywhatwhatdidyousay.wordpress.com}};
\node (qurl) [below=of happyurl, xshift=10.5mm, yshift=+1.2cm]
{\tiny \url{http://pngimages.net}};
\else
\ifdefined\paperinit
\node (happy) [inner sep=0pt, below=of paper, yshift=+8mm]
{\includegraphics[width=2cm]{img/happy.jpg}};
\node (happyurl) [below=of happy, xshift=-9.5mm, yshift=+1cm]
{\tiny \url{https://heywhatwhatdidyousay.wordpress.com}};
\fi
\fi
%% Software...
\let\ppopacity\undefined
\ifdefined\allopacity \newcommand{\ppopacity}{1}
\else \ifdefined\focusonpackages
\newcommand{\ppopacity}{1}
\else
\newcommand{\ppopacity}{0.3}
\fi
\fi
\ifdefined\sver
\node (sver)
[rbox, above=of soft, yshift=-8mm, opacity=\ppopacity]
{What version?};
\fi
\ifdefined\srep
\node (srep)
[rbox, above=of sver, yshift=-8mm, opacity=\ppopacity]
{Repository?};
\fi
%% Build
\ifdefined\dver
\node (dver)
[rbox, above=of build, yshift=-8mm, opacity=\ppopacity]
{Dependencies?};
\fi
\ifdefined\ddver
\node (ddver)
[rbox, above=of dver, yshift=-8mm, opacity=\ppopacity]
{Dep. versions?};
\fi
\ifdefined\confopt
\node (confopt)
[rbox, above=of ddver, yshift=-8mm, opacity=\ppopacity]
{Config options?};
\fi
\ifdefined\confenv
\node (confenv)
[rbox, above=of confopt, yshift=-8mm, opacity=\ppopacity]
{Config environment?};
\fi
%% Hardware/data
\let\ppopacity\undefined
\ifdefined\allopacity \newcommand{\ppopacity}{1}
\else \ifdefined\focusonhardware
\newcommand{\ppopacity}{1}
\else
\newcommand{\ppopacity}{0.3}
\fi
\fi
\ifdefined\db
\node (db)
[rbox, below=of hard, yshift=+8mm, opacity=\ppopacity]
{Data base, or PID?};
\fi
\ifdefined\calib
\node (calib)
[rbox, below=of db, yshift=+8mm, opacity=\ppopacity]
{Calibration/version?};
\fi
\ifdefined\corr
\node (corr)
[rbox, below=of calib, yshift=+8mm, opacity=\ppopacity]
{Integrity?};
\fi
%% Run software ...
\let\ppopacity\undefined
\ifdefined\allopacity \newcommand{\ppopacity}{1}
\else \ifdefined\focusonrun
\newcommand{\ppopacity}{1}
\else
\newcommand{\ppopacity}{0.3}
\fi
\fi
\ifdefined\runord
\node (runord)
[rbox, above=of srun, yshift=-8mm, opacity=\ppopacity]
{What order?};
\fi
\ifdefined\runopt
\node (runopt)
[rbox, above=of runord, yshift=-8mm, opacity=\ppopacity]
{Runtime options?};
\fi
\ifdefined\humanerr
\node (humanerr)
[rbox, above=of runopt, yshift=-8mm, opacity=\ppopacity]
{Human error?};
\fi
\ifdefined\confirmbias
\node (confirmbias)
[rbox, above=of humanerr, yshift=-8mm, opacity=\ppopacity]
{Confirmation bias?};
\fi
\ifdefined\depupdate
\node (depupdate)
[rbox, below=of srun, yshift=+8mm, opacity=\ppopacity]
{Environment update?};
\fi
\ifdefined\coauth
\node (coaut)
[rbox, below=of depupdate, yshift=+8mm, opacity=\ppopacity]
{In sync with coauthors?};
\fi
%% Paper ...
\let\ppopacity\undefined
\ifdefined\allopacity \newcommand{\ppopacity}{1}
\else \ifdefined\focusonpaper
\newcommand{\ppopacity}{1}
\else
\newcommand{\ppopacity}{0.3}
\fi
\fi
\ifdefined\varsinpaper
\node (varsinpaper)
[rbox, above=of paper, xshift=-1mm, yshift=-8mm, opacity=\ppopacity]
{Sync with analysis?};
\fi
\ifdefined\recordinfo
\node (recordinfo)
[rbox, above=of varsinpaper, yshift=-8mm, opacity=\ppopacity]
{Report this info?};
\fi
\ifdefined\softcite
\node (softcite)
[rbox, above=of recordinfo, yshift=-8mm, opacity=\ppopacity]
{Cited software?};
\fi
\ifdefined\prevchange
\node (prevchange)
[rbox, above=of softcite, yshift=-8mm, opacity=\ppopacity]
{History recorded?};
\fi
\ifdefined\gitlogo
\node [inner sep=0pt, opacity=0.5] at (5.5,0)
{\includegraphics[width=10cm]{img/git.png}};
\fi
\end{tikzpicture}
\end{center}
\vspace{-1.2cm} \scriptsize
\textcolor{green!50!black}{Green boxes} with sharp corners:
\emph{source}/input components/files.\\
\textcolor{blue}{Blue boxes} with rounded corners: \emph{built} components.\\
\textcolor{red}{Red boxes} with dashed borders: questions that must be clarified for each phase.
}
|
