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After the previous experience of presenting the slides in Ghent, they
are reordered to be more clear and cause less confusion. In
particular, until this commit, I was describing the software build
steps in the end, so the audience mainly forgot about the analysis
steps and thought this template is just something like Docker or a
virtual machine.
With this commit, the steps are described in the same step that occur:
first how the software are built, then how the input data are
downloaded and finally how the software are run on the data and the
values are written into the paper.
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For the introduction I am now using quotes from published papers.
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A graph was added showing how Git branching and history are used to
verfiy the integrity of the result.
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The slides were significantly upgraded to help in making a better
introduction and clearly demonstrating things for the users.
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The word "pipeline" is confusing, so we refer to the blank project as
"template" now.
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It was a long time since the last work on these slides. So the recent
changes (and in particular the installation of software) are now
described and my affiliation is also corrected).
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A Makefile was added to help manage the files and processes in this
repo.
Also, one of the "template" links was pointing to the old reproduction
pipeline repository. This is fixed now.
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The title was updated to be more generic and a link to the template
output has also been added.
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The name of the repository and the various links to it are
`reproducibile-paper', so its better that the slides also have a
similar name.
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