diff options
author | Mohammad Akhlaghi <mohammad@akhlaghi.org> | 2019-06-05 02:28:39 +0200 |
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committer | Mohammad Akhlaghi <mohammad@akhlaghi.org> | 2019-06-05 02:28:39 +0200 |
commit | a1c8b3a49abedbcc6b3188ff2776d8062e937995 (patch) | |
tree | 70af9cc6d66c5769a3d409df7793d65099bf9a96 | |
parent | 158dbe2bbad88af34cca5af605c1444e1efb4019 (diff) |
Introduction is now quotes from published papers
For the introduction I am now using quotes from published papers.
-rw-r--r-- | img/schrodinger-code.png | bin | 0 -> 899899 bytes | |||
-rw-r--r-- | reproducible-paper.tex | 66 |
2 files changed, 48 insertions, 18 deletions
diff --git a/img/schrodinger-code.png b/img/schrodinger-code.png Binary files differnew file mode 100644 index 0000000..3cd5983 --- /dev/null +++ b/img/schrodinger-code.png diff --git a/reproducible-paper.tex b/reproducible-paper.tex index 52e0842..d9f7d52 100644 --- a/reproducible-paper.tex +++ b/reproducible-paper.tex @@ -93,29 +93,59 @@ - \begin{frame}{Necessity of (exactly) reproducible research} - \begin{itemize} - \setlength\itemsep{0.7cm} - \item To be considered \alert{scientific}, any result has to be - reproducible. - \item The tsunami of data, fast internet, and high processing - power have made it very easy to \alert{promptly arrive at a - result}. - \item But these factors have also greatly increased the - \alert{complexity} of an analysis. Making it impossible to - exactly describe all steps in a traditional published paper. - \item Most scientific papers thus \alert{ignore some ``details''} - (as they interpret it). - \item But due to the complexity, even a small deviation from the - exact result, can be due to many different parts of the - analysis. Hence, its \alert{critical to exactly reproduce} a - result. - \end{itemize} +% \begin{frame}{Necessity of (exactly) reproducible research} +% \begin{itemize} +% \setlength\itemsep{0.7cm} +% \item To be considered \alert{scientific}, any result has to be +% reproducible. +% \item The tsunami of data, fast internet, and high processing +% power have made it very easy to \alert{promptly arrive at a +% result}. +% \item But these factors have also greatly increased the +% \alert{complexity} of an analysis. Making it impossible to +% exactly describe all steps in a traditional published paper. +% \item Most scientific papers thus \alert{ignore some ``details''} +% (as they interpret it). +% \item But due to the complexity, even a small deviation from the +% exact result, can be due to many different parts of the +% analysis. Hence, its \alert{critical to exactly reproduce} a +% result. +% \end{itemize} +% \end{frame} + + \begin{frame}{Reproducibility crisis in the sciences/astronomy} + \begin{tcolorbox}[title=Snakes on a Spaceship -- An Overview of Python in Heliophysics] + \small ``...\alert{inadequate analysis descriptions} and loss of + scientific data have made scientific studies \alert{difficult} + or \alert{impossible} to replicate''. From Burrell+2018, + \arxivlink{1901.00143}. + \end{tcolorbox} + \pause + \begin{tcolorbox}[title=Perspectives on Reproducibility and Sustainability of Open-Source Scientific Software] + ``It is our interest that NASA adopt an open-code policy because + without it, reproducibility in computational science is + \alert{needlessly hampered}''. From Oishi+2018, + \arxivlink{1801.08200}. + \end{tcolorbox} + \pause + \begin{tcolorbox}[title=Schroedinger's code: source code availability and link persistence\\ in astrophysics] + ``We were \alert{unable to find source code} online ... for + $40.4\%$ of the codes used in the research we looked at''. From + Allen+2018, \arxivlink{1801.02094}. + \end{tcolorbox} + \end{frame} + + \begin{frame} + \centering + \includegraphics[width=0.6\linewidth]{img/schrodinger-code.png} + + \footnotesize Original image from \href{https://www.redbubble.com/people/seriesclothing/works/28520432-the-flash-ciscos-shirt-wanted-dead-and-alive-scr-dingers-cat}{\texttt{https://www.redbubble.com}} \end{frame} + \newcommand{\nodeopacity}{1} \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame} \newcommand{\paperinit}{} |