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authorMohammad Akhlaghi <mohammad@akhlaghi.org>2019-06-05 02:28:39 +0200
committerMohammad Akhlaghi <mohammad@akhlaghi.org>2019-06-05 02:28:39 +0200
commita1c8b3a49abedbcc6b3188ff2776d8062e937995 (patch)
tree70af9cc6d66c5769a3d409df7793d65099bf9a96
parent158dbe2bbad88af34cca5af605c1444e1efb4019 (diff)
Introduction is now quotes from published papers
For the introduction I am now using quotes from published papers.
-rw-r--r--img/schrodinger-code.pngbin0 -> 899899 bytes
-rw-r--r--reproducible-paper.tex66
2 files changed, 48 insertions, 18 deletions
diff --git a/img/schrodinger-code.png b/img/schrodinger-code.png
new file mode 100644
index 0000000..3cd5983
--- /dev/null
+++ b/img/schrodinger-code.png
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diff --git a/reproducible-paper.tex b/reproducible-paper.tex
index 52e0842..d9f7d52 100644
--- a/reproducible-paper.tex
+++ b/reproducible-paper.tex
@@ -93,29 +93,59 @@
- \begin{frame}{Necessity of (exactly) reproducible research}
- \begin{itemize}
- \setlength\itemsep{0.7cm}
- \item To be considered \alert{scientific}, any result has to be
- reproducible.
- \item The tsunami of data, fast internet, and high processing
- power have made it very easy to \alert{promptly arrive at a
- result}.
- \item But these factors have also greatly increased the
- \alert{complexity} of an analysis. Making it impossible to
- exactly describe all steps in a traditional published paper.
- \item Most scientific papers thus \alert{ignore some ``details''}
- (as they interpret it).
- \item But due to the complexity, even a small deviation from the
- exact result, can be due to many different parts of the
- analysis. Hence, its \alert{critical to exactly reproduce} a
- result.
- \end{itemize}
+% \begin{frame}{Necessity of (exactly) reproducible research}
+% \begin{itemize}
+% \setlength\itemsep{0.7cm}
+% \item To be considered \alert{scientific}, any result has to be
+% reproducible.
+% \item The tsunami of data, fast internet, and high processing
+% power have made it very easy to \alert{promptly arrive at a
+% result}.
+% \item But these factors have also greatly increased the
+% \alert{complexity} of an analysis. Making it impossible to
+% exactly describe all steps in a traditional published paper.
+% \item Most scientific papers thus \alert{ignore some ``details''}
+% (as they interpret it).
+% \item But due to the complexity, even a small deviation from the
+% exact result, can be due to many different parts of the
+% analysis. Hence, its \alert{critical to exactly reproduce} a
+% result.
+% \end{itemize}
+% \end{frame}
+
+ \begin{frame}{Reproducibility crisis in the sciences/astronomy}
+ \begin{tcolorbox}[title=Snakes on a Spaceship -- An Overview of Python in Heliophysics]
+ \small ``...\alert{inadequate analysis descriptions} and loss of
+ scientific data have made scientific studies \alert{difficult}
+ or \alert{impossible} to replicate''. From Burrell+2018,
+ \arxivlink{1901.00143}.
+ \end{tcolorbox}
+ \pause
+ \begin{tcolorbox}[title=Perspectives on Reproducibility and Sustainability of Open-Source Scientific Software]
+ ``It is our interest that NASA adopt an open-code policy because
+ without it, reproducibility in computational science is
+ \alert{needlessly hampered}''. From Oishi+2018,
+ \arxivlink{1801.08200}.
+ \end{tcolorbox}
+ \pause
+ \begin{tcolorbox}[title=Schroedinger's code: source code availability and link persistence\\ in astrophysics]
+ ``We were \alert{unable to find source code} online ... for
+ $40.4\%$ of the codes used in the research we looked at''. From
+ Allen+2018, \arxivlink{1801.02094}.
+ \end{tcolorbox}
+ \end{frame}
+
+ \begin{frame}
+ \centering
+ \includegraphics[width=0.6\linewidth]{img/schrodinger-code.png}
+
+ \footnotesize Original image from \href{https://www.redbubble.com/people/seriesclothing/works/28520432-the-flash-ciscos-shirt-wanted-dead-and-alive-scr-dingers-cat}{\texttt{https://www.redbubble.com}}
\end{frame}
+
\newcommand{\nodeopacity}{1}
\begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
\newcommand{\paperinit}{}