Data lineage plot now also includes references.tex

This helps viewers feel a better connection with a standard paper.

42 files changed, 23 insertions, 23 deletions

diff --git a/img/make-demo-1.pdf b/img/data-lineage-1.pdf
index 6533382..ffa9df7 100644
--- a/img/make-demo-1.pdf
+++ b/img/data-lineage-1.pdf
diff --git a/img/data-lineage-10.pdf b/img/data-lineage-10.pdf
new file mode 100644
index 0000000..263b150
--- /dev/null
+++ b/img/data-lineage-10.pdf
diff --git a/img/data-lineage-11.pdf b/img/data-lineage-11.pdf
new file mode 100644
index 0000000..913e31f
--- /dev/null
+++ b/img/data-lineage-11.pdf
diff --git a/img/data-lineage-12.pdf b/img/data-lineage-12.pdf
new file mode 100644
index 0000000..9b29c45
--- /dev/null
+++ b/img/data-lineage-12.pdf
diff --git a/img/data-lineage-13.pdf b/img/data-lineage-13.pdf
new file mode 100644
index 0000000..65b8b02
--- /dev/null
+++ b/img/data-lineage-13.pdf
diff --git a/img/data-lineage-14.pdf b/img/data-lineage-14.pdf
new file mode 100644
index 0000000..31bfa27
--- /dev/null
+++ b/img/data-lineage-14.pdf
diff --git a/img/data-lineage-15.pdf b/img/data-lineage-15.pdf
new file mode 100644
index 0000000..409cee4
--- /dev/null
+++ b/img/data-lineage-15.pdf
diff --git a/img/data-lineage-16.pdf b/img/data-lineage-16.pdf
new file mode 100644
index 0000000..d924ec2
--- /dev/null
+++ b/img/data-lineage-16.pdf
diff --git a/img/data-lineage-17.pdf b/img/data-lineage-17.pdf
new file mode 100644
index 0000000..5ac0675
--- /dev/null
+++ b/img/data-lineage-17.pdf
diff --git a/img/data-lineage-18.pdf b/img/data-lineage-18.pdf
new file mode 100644
index 0000000..a800a44
--- /dev/null
+++ b/img/data-lineage-18.pdf
diff --git a/img/data-lineage-19.pdf b/img/data-lineage-19.pdf
new file mode 100644
index 0000000..7513caa
--- /dev/null
+++ b/img/data-lineage-19.pdf
diff --git a/img/make-demo-2.pdf b/img/data-lineage-2.pdf
index 2c59d13..e338e82 100644
--- a/img/make-demo-2.pdf
+++ b/img/data-lineage-2.pdf
diff --git a/img/data-lineage-20.pdf b/img/data-lineage-20.pdf
new file mode 100644
index 0000000..13ffab5
--- /dev/null
+++ b/img/data-lineage-20.pdf
diff --git a/img/data-lineage-21.pdf b/img/data-lineage-21.pdf
new file mode 100644
index 0000000..c7d4372
--- /dev/null
+++ b/img/data-lineage-21.pdf
diff --git a/img/data-lineage-22.pdf b/img/data-lineage-22.pdf
new file mode 100644
index 0000000..f2155aa
--- /dev/null
+++ b/img/data-lineage-22.pdf
diff --git a/img/data-lineage-3.pdf b/img/data-lineage-3.pdf
new file mode 100644
index 0000000..a8a5671
--- /dev/null
+++ b/img/data-lineage-3.pdf
diff --git a/img/make-demo-5.pdf b/img/data-lineage-4.pdf
index 8f9aa85..6d686a7 100644
--- a/img/make-demo-5.pdf
+++ b/img/data-lineage-4.pdf
diff --git a/img/make-demo-4.pdf b/img/data-lineage-5.pdf
index 154d61f..3ae9baf 100644
--- a/img/make-demo-4.pdf
+++ b/img/data-lineage-5.pdf
diff --git a/img/data-lineage-6.pdf b/img/data-lineage-6.pdf
new file mode 100644
index 0000000..374de91
--- /dev/null
+++ b/img/data-lineage-6.pdf
diff --git a/img/data-lineage-7.pdf b/img/data-lineage-7.pdf
new file mode 100644
index 0000000..b590898
--- /dev/null
+++ b/img/data-lineage-7.pdf
diff --git a/img/data-lineage-8.pdf b/img/data-lineage-8.pdf
new file mode 100644
index 0000000..7dd6425
--- /dev/null
+++ b/img/data-lineage-8.pdf
diff --git a/img/data-lineage-9.pdf b/img/data-lineage-9.pdf
new file mode 100644
index 0000000..29c6e5a
--- /dev/null
+++ b/img/data-lineage-9.pdf
diff --git a/img/figure-file-architecture-1.pdf b/img/figure-file-architecture-1.pdf
index 996b7a9..cae5b83 100644
--- a/img/figure-file-architecture-1.pdf
+++ b/img/figure-file-architecture-1.pdf
diff --git a/img/figure-file-architecture-2.pdf b/img/figure-file-architecture-2.pdf
index 511349b..e51426a 100644
--- a/img/figure-file-architecture-2.pdf
+++ b/img/figure-file-architecture-2.pdf
diff --git a/img/make-demo-10.pdf b/img/make-demo-10.pdf
deleted file mode 100644
index 5ef916f..0000000
--- a/img/make-demo-10.pdf
+++ /dev/null
diff --git a/img/make-demo-11.pdf b/img/make-demo-11.pdf
deleted file mode 100644
index e8c41e7..0000000
--- a/img/make-demo-11.pdf
+++ /dev/null
diff --git a/img/make-demo-12.pdf b/img/make-demo-12.pdf
deleted file mode 100644
index ce0c626..0000000
--- a/img/make-demo-12.pdf
+++ /dev/null
diff --git a/img/make-demo-13.pdf b/img/make-demo-13.pdf
deleted file mode 100644
index a25f1ca..0000000
--- a/img/make-demo-13.pdf
+++ /dev/null
diff --git a/img/make-demo-14.pdf b/img/make-demo-14.pdf
deleted file mode 100644
index 47690d3..0000000
--- a/img/make-demo-14.pdf
+++ /dev/null
diff --git a/img/make-demo-15.pdf b/img/make-demo-15.pdf
deleted file mode 100644
index 6158c71..0000000
--- a/img/make-demo-15.pdf
+++ /dev/null
diff --git a/img/make-demo-16.pdf b/img/make-demo-16.pdf
deleted file mode 100644
index 33a42f1..0000000
--- a/img/make-demo-16.pdf
+++ /dev/null
diff --git a/img/make-demo-17.pdf b/img/make-demo-17.pdf
deleted file mode 100644
index 4be2e50..0000000
--- a/img/make-demo-17.pdf
+++ /dev/null
diff --git a/img/make-demo-18.pdf b/img/make-demo-18.pdf
deleted file mode 100644
index 2d63901..0000000
--- a/img/make-demo-18.pdf
+++ /dev/null
diff --git a/img/make-demo-19.pdf b/img/make-demo-19.pdf
deleted file mode 100644
index 9036c63..0000000
--- a/img/make-demo-19.pdf
+++ /dev/null
diff --git a/img/make-demo-20.pdf b/img/make-demo-20.pdf
deleted file mode 100644
index 44c5621..0000000
--- a/img/make-demo-20.pdf
+++ /dev/null
diff --git a/img/make-demo-21.pdf b/img/make-demo-21.pdf
deleted file mode 100644
index d1d12f7..0000000
--- a/img/make-demo-21.pdf
+++ /dev/null
diff --git a/img/make-demo-3.pdf b/img/make-demo-3.pdf
deleted file mode 100644
index 9570d9b..0000000
--- a/img/make-demo-3.pdf
+++ /dev/null
diff --git a/img/make-demo-6.pdf b/img/make-demo-6.pdf
deleted file mode 100644
index 2b29295..0000000
--- a/img/make-demo-6.pdf
+++ /dev/null
diff --git a/img/make-demo-7.pdf b/img/make-demo-7.pdf
deleted file mode 100644
index 369e80f..0000000
--- a/img/make-demo-7.pdf
+++ /dev/null
diff --git a/img/make-demo-8.pdf b/img/make-demo-8.pdf
deleted file mode 100644
index 4d88a61..0000000
--- a/img/make-demo-8.pdf
+++ /dev/null
diff --git a/img/make-demo-9.pdf b/img/make-demo-9.pdf
deleted file mode 100644
index baafd60..0000000
--- a/img/make-demo-9.pdf
+++ /dev/null
diff --git a/reproducible-paper.tex b/reproducible-paper.tex
index 53d293b..7a6cbef 100644
--- a/reproducible-paper.tex
+++ b/reproducible-paper.tex
@@ -1008,49 +1008,49 @@
     \vspace{1cm}
     \hfill Let's see how the analysis is managed in a hypothetical project...
   \end{frame}
-  \makedemoslide{img/make-demo-1.pdf}
+  \makedemoslide{img/data-lineage-1.pdf}
                 {Makefiles (\texttt{\*.mk}) keep contextually separate parts of the project, all imported into \texttt{top-make.mk}}
-  \makedemoslide{img/make-demo-2.pdf}
+  \makedemoslide{img/data-lineage-2.pdf}
                 {The ultimate purpose of the project is to produce a paper/report (in PDF).}
-  \makedemoslide{img/make-demo-3.pdf}
-                {The narrative description of the PDF and \LaTeX{} typography is kept in \texttt{paper.tex}.}
-  \makedemoslide{img/make-demo-4.pdf}
+  \makedemoslide{img/data-lineage-3.pdf}
+                {The narrative description, typography and references are in \texttt{paper.tex} \& \texttt{references.tex}.}
+  \makedemoslide{img/data-lineage-4.pdf}
                 {Analysis outputs (blended into the PDF as \LaTeX{} macros) come from \texttt{project.tex}.}
-  \makedemoslide{img/make-demo-5.pdf}
+  \makedemoslide{img/data-lineage-5.pdf}
                 {But analysis outputs must first be \emph{verified} (with checksums) before entering the report/paper.}
-  \makedemoslide{img/make-demo-6.pdf}
+  \makedemoslide{img/data-lineage-6.pdf}
                 {Basic project info comes from \texttt{initialize.tex}.}
-  \makedemoslide{img/make-demo-7.pdf}
+  \makedemoslide{img/data-lineage-7.pdf}
                 {Reported values about the downloaded inputs come from \texttt{download.tex}.}
-  \makedemoslide{img/make-demo-8.pdf}
+  \makedemoslide{img/data-lineage-8.pdf}
                 {... for example the number of rows in the second input (a catalog) of the project.}
-  \makedemoslide{img/make-demo-9.pdf}
+  \makedemoslide{img/data-lineage-9.pdf}
                 {The URL to download \texttt{input2.dat}, and a checksum to validate it, are stored in \texttt{INPUTS.conf}.}
-  \makedemoslide{img/make-demo-10.pdf}
+  \makedemoslide{img/data-lineage-10.pdf}
                 {Reported values from first analysis steps stored in \texttt{analysis1.tex}.}
-  \makedemoslide{img/make-demo-11.pdf}
+  \makedemoslide{img/data-lineage-11.pdf}
                 {... for example the average of the numbers in \texttt{out-1b.dat}.}
-  \makedemoslide{img/make-demo-12.pdf}
+  \makedemoslide{img/data-lineage-12.pdf}
                 {But \texttt{out-1b.dat} itself depends on other files and a paramter (for example a multiple of sigma).}
-  \makedemoslide{img/make-demo-13.pdf}
+  \makedemoslide{img/data-lineage-13.pdf}
                 {\texttt{out-1a.dat} is built from a downloaded dataset.}
-  \makedemoslide{img/make-demo-14.pdf}
+  \makedemoslide{img/data-lineage-14.pdf}
                 {Download URL and checksum of \texttt{input1.dat} also stored in \texttt{INPUTS.conf}.}
-  \makedemoslide{img/make-demo-15.pdf}
+  \makedemoslide{img/data-lineage-15.pdf}
                 {Reported values from second analysis steps stored in \texttt{analysis2.tex}.}
-  \makedemoslide{img/make-demo-16.pdf}
+  \makedemoslide{img/data-lineage-16.pdf}
                 {... for example the number of selected rows in \texttt{out-2b.dat}.}
-  \makedemoslide{img/make-demo-17.pdf}
+  \makedemoslide{img/data-lineage-17.pdf}
                 {\texttt{out-2b.dat} is derived from \texttt{out-1b.dat} (for example, rejected some of \texttt{out-1b.dat}'s rows).}
-  \makedemoslide{img/make-demo-18.pdf}
+  \makedemoslide{img/data-lineage-18.pdf}
                 {Reported values from third analysis steps stored in \texttt{analysis3.tex}.}
-  \makedemoslide{img/make-demo-19.pdf}
+  \makedemoslide{img/data-lineage-19.pdf}
                 {... for example measurements from both \texttt{out-3a.dat} and \texttt{out-3b.dat}.}
-  \makedemoslide{img/make-demo-20.pdf}
+  \makedemoslide{img/data-lineage-20.pdf}
                 {\texttt{out-3b.dat} is generated from an analysis on \texttt{out-2a.dat}.}
-  \makedemoslide{img/make-demo-21.pdf}
+  \makedemoslide{img/data-lineage-21.pdf}
                 {But \texttt{out-2a.dat} itself is generated from \texttt{input1.dat} and an analysis which has two settings.}
-  \makedemoslide{img/make-demo-22.pdf}
+  \makedemoslide{img/data-lineage-22.pdf}
                 {\texttt{out-3a.dat} also depends on \texttt{out-1a.dat} and an analysis with needs one parameter.}