Highlighed astronomer in image on replicability

The image that is used for replicability was intentionally chosen
because it has an astronomer sitting behind the secondary mirror
(showing the hard work that goes into data collection). But the image
has too many details and the person can be completely missed by the
viewers. So I just darkened the outer parts and added an arrow to let
the audience understand the point of the image.

2 files changed, 83 insertions, 27 deletions

diff --git a/img/hale-prime-focus-marked.jpg b/img/hale-prime-focus-marked.jpg
new file mode 100644
index 0000000..e75cb8c
--- /dev/null
+++ b/img/hale-prime-focus-marked.jpg
diff --git a/reproducible-paper.tex b/reproducible-paper.tex
index 80c323d..2e55c5b 100644
--- a/reproducible-paper.tex
+++ b/reproducible-paper.tex
@@ -246,6 +246,62 @@
       \end{center}
 
       \column{0.5\linewidth}
+    \end{columns}
+  \end{frame}
+  \begin{frame}[t]{Definitions \& Clarification \hspace{1.6cm} {\normalsize(from the National Academies report in 2019, \href{http://doi.org/10.17226/25303}{DOI:10.17226/25303})}}
+    \vspace{-5mm}
+    \begin{columns}[t]
+      \column{0.5\linewidth}
+      \begin{center}
+        \large\textbf{Replicability (hardware/statistical)}
+        \rule{0.5\linewidth}{1pt}
+      \end{center}
+      \begin{itemize}
+        \setlength\itemsep{0.5em}
+      \item Involves data \alert{collection}.
+      \item Inherently includes \alert{measurements errors}\\(can
+        never be exactly reproduced).
+      \item Example: Raw telescope image/spectra.
+      \item \alert{\textbf{NOT DISCUSSED HERE.}}
+      \end{itemize}
+
+      \vspace{3.5mm}
+      \begin{center}
+        \vspace{-5mm}
+        \includegraphics[width=0.7\linewidth]{img/hale-prime-focus-marked.jpg}\\
+        \vspace{-0.6mm}
+        \tiny \href{http://slittlefair.staff.shef.ac.uk/teaching/phy217/lectures/telescopes/L07/index.html}{http://slittlefair.staff.shef.ac.uk}
+      \end{center}
+
+      \column{0.5\linewidth}
+    \end{columns}
+  \end{frame}
+  \begin{frame}[t]{Definitions \& Clarification \hspace{1.6cm} {\normalsize(from the National Academies report in 2019, \href{http://doi.org/10.17226/25303}{DOI:10.17226/25303})}}
+    \vspace{-5mm}
+    \begin{columns}[t]
+      \column{0.5\linewidth}
+      \begin{center}
+        \large\textbf{Replicability (hardware/statistical)}
+        \rule{0.5\linewidth}{1pt}
+      \end{center}
+      \begin{itemize}
+        \setlength\itemsep{0.5em}
+      \item Involves data \alert{collection}.
+      \item Inherently includes \alert{measurements errors}\\(can
+        never be exactly reproduced).
+      \item Example: Raw telescope image/spectra.
+      \item \alert{\textbf{NOT DISCUSSED HERE.}}
+      \end{itemize}
+
+      \vspace{3.5mm}
+      \begin{center}
+        \vspace{-5mm}
+        \includegraphics[width=0.7\linewidth]{img/hale-prime-focus.jpg}\\
+        \vspace{-0.6mm}
+        \tiny \href{http://slittlefair.staff.shef.ac.uk/teaching/phy217/lectures/telescopes/L07/index.html}{http://slittlefair.staff.shef.ac.uk}
+      \end{center}
+
+      \column{0.5\linewidth}
       \begin{center}
         \large\textbf{Reproducibility (Software/Deterministic)}
         \rule{0.5\linewidth}{1pt}
@@ -273,11 +329,11 @@
 
   %% Step-by-step slides.
   \newcommand{\allopacity}{1}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \newcommand{\paperinit}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \newcommand{\sver}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \begin{frame}{Different package managers have different versions of software (repology.org, 2019/11/20)}
     \begin{columns}
       \column{7cm} \center
@@ -289,15 +345,15 @@
     \end{columns}
   \end{frame}
   \newcommand{\srep}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \newcommand{\dver}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \newcommand{\ddver}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \newcommand{\confopt}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \newcommand{\confenv}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \begin{frame}{Example: Matplotlib (a Python visualization library) build dependencies}
     \Wider[5em]{
       %\vspace{5mm}
@@ -322,35 +378,35 @@
     \end{columns}
   \end{frame}
   \newcommand{\containers}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \newcommand{\db}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \newcommand{\calib}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \newcommand{\corr}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \newcommand{\runord}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \newcommand{\runopt}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \newcommand{\humanerr}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \newcommand{\confirmbias}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \newcommand{\depupdate}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \newcommand{\coauth}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \newcommand{\varsinpaper}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \newcommand{\recordinfo}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \newcommand{\softcite}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \newcommand{\prevchange}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \newcommand{\paperfinal}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
 
 
   %% Don't show the happy scientist or the existing containers box.
@@ -415,7 +471,7 @@
 
 
   \newcommand{\focusonpackages}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \let\focusonpackages\undefined
 
 
@@ -668,7 +724,7 @@
 
   %% Hardware/data
   \newcommand{\focusonhardware}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \let\focusonhardware\undefined
 
   \begin{frame}{Input data source and integrity is documented and checked}
@@ -735,7 +791,7 @@
 
   %% Analysis
   \newcommand{\focusonrun}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \let\focusonrun\undefined
 
 
@@ -867,7 +923,7 @@
 
 
   \newcommand{\focusonpaper}{}
-  \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
+  \begin{frame}{General outline of a project (after data collection)} \include{tex/project-graph} \end{frame}
   \let\focusonpaper\undefined