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In order to collaborate effectively in the project, even project members
that don't necessarily want (or have the capacity) to do the whole analysis
must be able to contribute to the project. Until now, the users of the
distributed tarball could only modify the text and not the figures (built
with PGFPlots) of the paper.
With this commit, the management of TeX source files in the pipeline was
slightly modified to allow this as cleanly as I could think of now! In
short, the hand-written TeX files are now kept in `tex/src' and for the
pipeline's generated TeX files (in particular the old `tex/pipeline.tex'),
we now have a `tex/pipeline' symbolic-link/directory that points to the
`tex' directory under the build directory.
When packaging the project, `tex/pipeline' will be a full directory with a
copy of all the necessary files. Therefore as far as LaTeX is concerned,
having a build-directory is no longer relevant. Many other small changes
were made to do this job cleanly which will just make this commit message
too long!
Also, the old `tarball' and `zip' targets are now `dist' and `dist-zip' (as
in the standard GNU Build system).
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Some minor corrections have been made in the paper's text to make things
easier to read and be more formal.
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The computer modern font that was designed by Donald Knuth and is the
default of LaTeX is indeed a very good, elegant and nice font in
print. However, most journals choose the roman fonts and thus the computer
modern font doesn't (subjectively) fit into the journal format nicely. So
the default font of this pipeline's paper now uses LaTeX's `newtx' package
for a roman style font.
Also, a set of preamble settings were added to allow headers in the pages
of the paper to make the result resemble more like a journal paper
(familiar to the eye), while also adding important information. A new
header was made for this job. This new header now also contains the title
and author settings (after all, these are also a type of header).
Finally, the LaTeX `authblk' package was used to organize authors and their
affiliations.
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