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-rw-r--r--reproduce/config/pipeline/dependency-versions.mk21
-rwxr-xr-xreproduce/src/make/dependencies-atlas-multiple.mk47
-rwxr-xr-xreproduce/src/make/dependencies-atlas-single.mk29
-rw-r--r--reproduce/src/make/dependencies-basic.mk33
-rw-r--r--reproduce/src/make/dependencies-python.mk3
-rw-r--r--reproduce/src/make/dependencies.mk70
6 files changed, 179 insertions, 24 deletions
diff --git a/reproduce/config/pipeline/dependency-versions.mk b/reproduce/config/pipeline/dependency-versions.mk
index 7cdddac..609d1cb 100644
--- a/reproduce/config/pipeline/dependency-versions.mk
+++ b/reproduce/config/pipeline/dependency-versions.mk
@@ -42,6 +42,7 @@ xz-version = 5.2.4
zip-version = 3.0
# Libraries
+atlas-version = 3.10.3
cfitsio-version = 3.45
curl-version = 7.63.0
gsl-version = 2.5
@@ -49,6 +50,17 @@ libjpeg-version = v9b
libtiff-version = 4.0.10
zlib-version = 1.2.11
+# Special libraries
+# -----------------
+#
+# When updating the version of these libraries, please look into the build
+# rule first: In one way or another, the version string becomes necessary
+# during their build and must be accounted for.
+bzip2-version = 1.0.6
+lapack-version = 3.8.0
+libgit2-version = 0.26.0
+wcslib-version = 6.2
+
# Python packages
# ---------------
#
@@ -86,12 +98,3 @@ urllib3-version = 1.24.1
virtualenv-version = 16.4.0
webencodings-version = 0.5.1
-# Special libraries
-# -----------------
-#
-# When updating the version of these libraries, please look into the build
-# rule first: In one way or another, the version string becomes necessary
-# during their build and must be accounted for.
-bzip2-version = 1.0.6
-libgit2-version = 0.26.0
-wcslib-version = 6.2
diff --git a/reproduce/src/make/dependencies-atlas-multiple.mk b/reproduce/src/make/dependencies-atlas-multiple.mk
new file mode 100755
index 0000000..d66890f
--- /dev/null
+++ b/reproduce/src/make/dependencies-atlas-multiple.mk
@@ -0,0 +1,47 @@
+ORIGLDFLAGS := $(LDFLAGS)
+
+include Make.inc
+
+all: libatlas.so libf77blas.so libptf77blas.so libstcblas.so libptcblas.so \
+ libblas.so libcblas.so liblapack.so.3.6.1 libptlapack.so.3.6.1 liblapack.so.3
+
+libatlas.so: libatlas.a
+ ld $(ORIGLDFLAGS) $(LDFLAGS) -shared -soname $@ -o $@ \
+ --whole-archive libatlas.a --no-whole-archive -lc $(LIBS)
+
+libf77blas.so : libf77blas.a libatlas.so
+ ld $(ORIGLDFLAGS) $(LDFLAGS) -shared -soname libf77blas.so.3 \
+ -o $@ --whole-archive libf77blas.a --no-whole-archive \
+ $(F77SYSLIB) -L. -latlas
+
+libptf77blas.so : libptf77blas.a libatlas.so
+ ld $(ORIGLDFLAGS) $(LDFLAGS) -shared -soname libblas.so.3 \
+ -o $@ --whole-archive libptf77blas.a --no-whole-archive \
+ $(F77SYSLIB) -L. -latlas
+
+libstcblas.so : libcblas.a libatlas.so libblas.so
+ ld $(ORIGLDFLAGS) $(LDFLAGS) -shared -soname libstcblas.so \
+ -o $@ --whole-archive libcblas.a -L. -latlas -lblas
+
+libptcblas.so : libptcblas.a libatlas.so libblas.so
+ ld $(ORIGLDFLAGS) $(LDFLAGS) -shared -soname libcblas.so \
+ -o $@ --whole-archive libptcblas.a -L. -latlas -lblas
+
+libblas.so: libptf77blas.so
+ ln -s $< $@
+
+libcblas.so: libptcblas.so
+ ln -s $< $@
+
+liblapack.so.3.6.1 : liblapack.a libstcblas.so libf77blas.so
+ ld $(ORIGLDFLAGS) $(LDFLAGS) -shared -soname libstlapack.so.3 \
+ -o $@ --whole-archive liblapack.a --no-whole-archive \
+ $(F77SYSLIB) -L. -lstcblas -lf77blas
+
+libptlapack.so.3.6.1 : libptlapack.a libcblas.so libblas.so
+ ld $(ORIGLDFLAGS) $(LDFLAGS) -shared -soname liblapack.so.3 \
+ -o $@ --whole-archive libptlapack.a --no-whole-archive \
+ $(F77SYSLIB) -L. -lcblas -lblas
+
+liblapack.so.3: libptlapack.so.3.6.1
+ ln -s $< $@
diff --git a/reproduce/src/make/dependencies-atlas-single.mk b/reproduce/src/make/dependencies-atlas-single.mk
new file mode 100755
index 0000000..12dd19b
--- /dev/null
+++ b/reproduce/src/make/dependencies-atlas-single.mk
@@ -0,0 +1,29 @@
+ORIGLDFLAGS := $(LDFLAGS)
+
+include Make.inc
+
+all: libatlas.so libf77blas.so libcblas.so libblas.so liblapack.so.3.6.1
+
+libatlas.so: libatlas.a
+ ld $(ORIGLDFLAGS) $(LDFLAGS) -shared -soname $@ -o $@ \
+ --whole-archive libatlas.a --no-whole-archive -lc $(LIBS)
+
+libf77blas.so : libf77blas.a libatlas.so
+ ld $(ORIGLDFLAGS) $(LDFLAGS) -shared -soname libblas.so.3 \
+ -o $@ --whole-archive libf77blas.a --no-whole-archive \
+ $(F77SYSLIB) -L. -latlas
+
+libcblas.so : libcblas.a libatlas.so libblas.so
+ ld $(ORIGLDFLAGS) $(LDFLAGS) -shared -soname $@ -o $@ \
+ --whole-archive libcblas.a -L. -latlas -lblas
+
+libblas.so: libf77blas.so
+ ln -s $< $@
+
+liblapack.so.3.6.1 : liblapack.a libcblas.so libblas.so
+ ld $(ORIGLDFLAGS) $(LDFLAGS) -shared -soname liblapack.so.3 \
+ -o $@ --whole-archive liblapack.a --no-whole-archive \
+ $(F77SYSLIB) -L. -lcblas -lblas
+
+liblapack.so.3: liblapack.so.3.6.1
+ ln -s $< $@
diff --git a/reproduce/src/make/dependencies-basic.mk b/reproduce/src/make/dependencies-basic.mk
index 5965f00..a5cda52 100644
--- a/reproduce/src/make/dependencies-basic.mk
+++ b/reproduce/src/make/dependencies-basic.mk
@@ -744,6 +744,12 @@ $(ibdir)/gcc: $(gcc-prerequisites) \
# On a macOS, we (currently!) won't build GCC because of some
# errors we are still trying to find. So, we'll just make a
# symbolic link to the host's executables.
+ #
+ # GCC builds is own libraries in '$(idir)/lib64'. But all other
+ # libraries are in '$(idir)/lib'. Since this pipeline is only for a
+ # single architecture, we can trick GCC into building its libraries
+ # in '$(idir)/lib' by defining the '$(idir)/lib64' as a symbolic
+ # link to '$(idir)/lib'.
if [ "x$(on_mac_os)" = xyes ]; then \
$(call makelink,gfortran); \
$(call makelink,gcc); \
@@ -754,12 +760,14 @@ $(ibdir)/gcc: $(gcc-prerequisites) \
rm -rf $(ildir)/gcc $(ildir)/libcc* $(ildir)/libgcc*; \
rm -rf $(ildir)/libgfortran* $(ildir)/libstdc* rm $(idir)/x86_64*;\
\
+ ln -fs $(ildir) $(idir)/lib64; \
+ \
cd $(ddir); \
rm -rf gcc-build gcc-$(gcc-version); \
- tar xf $< && \
- mkdir $(ddir)/gcc-build && \
- cd $(ddir)/gcc-build && \
- ../gcc-$(gcc-version)/configure SHELL=$(ibdir)/bash \
+ tar xf $< \
+ && mkdir $(ddir)/gcc-build \
+ && cd $(ddir)/gcc-build \
+ && ../gcc-$(gcc-version)/configure SHELL=$(ibdir)/bash \
--prefix=$(idir) \
--with-mpc=$(idir) \
--with-mpfr=$(idir) \
@@ -777,9 +785,16 @@ $(ibdir)/gcc: $(gcc-prerequisites) \
--enable-default-pie \
--enable-default-ssp \
--enable-cet=auto \
- --enable-decimal-float && \
- make SHELL=$(ibdir)/bash -j$$(nproc) && \
- make SHELL=$(ibdir)/bash install && \
- cd .. && \
- rm -rf gcc-build gcc-$(gcc-version); \
+ --enable-decimal-float \
+ && make SHELL=$(ibdir)/bash -j$$(nproc) \
+ && make SHELL=$(ibdir)/bash install \
+ && cd .. \
+ && rm -rf gcc-build gcc-$(gcc-version) \
+ \
+ && for f in $$(find $(idir)/libexec/gcc); do \
+ if ldd $$f &> /dev/null; then \
+ patchelf --set-rpath $(ildir) $$f; \
+ fi; \
+ done; \
fi
+
diff --git a/reproduce/src/make/dependencies-python.mk b/reproduce/src/make/dependencies-python.mk
index 946c047..3b92f7e 100644
--- a/reproduce/src/make/dependencies-python.mk
+++ b/reproduce/src/make/dependencies-python.mk
@@ -378,9 +378,6 @@ $(ipydir)/matplotlib: $(tdir)/matplotlib-$(matplotlib-version).tar.gz \
$(ipydir)/numpy: $(tdir)/numpy-$(numpy-version).zip \
$(ibdir)/python3
- export BLAS=None; \
- export ATLAS=None; \
- export LAPACK=None; \
$(call pybuild, unzip, $<, numpy-$(numpy-version))
$(ibdir)/pip3: $(tdir)/pip-$(pip-version).tar.gz \
diff --git a/reproduce/src/make/dependencies.mk b/reproduce/src/make/dependencies.mk
index deb9f39..7b34b31 100644
--- a/reproduce/src/make/dependencies.mk
+++ b/reproduce/src/make/dependencies.mk
@@ -44,7 +44,7 @@ ilidir = $(BDIR)/dependencies/installed/lib/built
# Define the top-level programs to build (installed in `.local/bin').
top-level-programs = astnoisechisel flock metastore unzip zip
-top-level-libraries = freetype
+top-level-libraries = atlas freetype
all: $(ddir)/texlive-versions.tex \
$(foreach p, $(top-level-programs), $(ibdir)/$(p)) \
$(foreach p, $(top-level-libraries), $(ilidir)/$(p))
@@ -67,12 +67,12 @@ all: $(ddir)/texlive-versions.tex \
.SHELLFLAGS := --noprofile --norc -ec
export CCACHE_DISABLE := 1
export PATH := $(ibdir)
-export LD_RUN_PATH := $(ildir)
-export LD_LIBRARY_PATH := $(ildir)
export SHELL := $(ibdir)/bash
export CPPFLAGS := -I$(idir)/include
export PKG_CONFIG_PATH := $(ildir)/pkgconfig
export PKG_CONFIG_LIBDIR := $(ildir)/pkgconfig
+export LD_RUN_PATH := $(ildir):$(il64dir)
+export LD_LIBRARY_PATH := $(ildir):$(il64dir)
export LDFLAGS := $(rpath_command) -L$(ildir)
@@ -90,6 +90,7 @@ export LDFLAGS := $(rpath_command) -L$(ildir)
# another format, we'll do the modification before the download so the
# downloaded file has our desired format.
tarballs = $(foreach t, cfitsio-$(cfitsio-version).tar.gz \
+ atlas-$(atlas-version).tar.bz2 \
cmake-$(cmake-version).tar.gz \
curl-$(curl-version).tar.gz \
flock-$(flock-version).tar.xz \
@@ -100,6 +101,7 @@ tarballs = $(foreach t, cfitsio-$(cfitsio-version).tar.gz \
gsl-$(gsl-version).tar.gz \
install-tl-unx.tar.gz \
jpegsrc.$(libjpeg-version).tar.gz \
+ lapack-$(lapack-version).tar.gz \
libbsd-$(libbsd-version).tar.xz \
libpng-$(libpng-version).tar.xz \
libtool-$(libtool-version).tar.xz \
@@ -130,6 +132,9 @@ $(tarballs): $(tdir)/%:
: (l==2 ? "%d00\n" \
: "%d000\n") ), $$1)}')
w=https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/cfitsio$$v.tar.gz
+ elif [ $$n = atlas ]; then
+ mergenames=0
+ w=https://sourceforge.net/projects/math-atlas/files/Stable/$(atlas-version)/atlas$(atlas-version).tar.bz2/download
elif [ $$n = cmake ]; then w=https://cmake.org/files/v3.12
elif [ $$n = curl ]; then w=https://curl.haxx.se/download
elif [ $$n = flock ]; then w=https://github.com/discoteq/flock/releases/download/v$(flock-version)
@@ -140,6 +145,7 @@ $(tarballs): $(tdir)/%:
elif [ $$n = gsl ]; then w=http://ftpmirror.gnu.org/gnu/gsl
elif [ $$n = install ]; then w=http://mirror.ctan.org/systems/texlive/tlnet
elif [ $$n = jpegsrc ]; then w=http://ijg.org/files
+ elif [ $$n = lapack ]; then w=http://www.netlib.org/lapack
elif [ $$n = libbsd ]; then w=http://libbsd.freedesktop.org/releases
elif [ $$n = libpng ]; then w=https://download.sourceforge.net/libpng
elif [ $$n = libtool ]; then w=http://ftpmirror.gnu.org/gnu/libtool
@@ -251,6 +257,64 @@ $(ilidir)/libtiff: $(tdir)/tiff-$(libtiff-version).tar.gz \
--disable-webp --disable-zstd) \
&& echo "Libtiff is built" > $@
+$(ilidir)/atlas: $(tdir)/atlas-$(atlas-version).tar.bz2 \
+ $(tdir)/lapack-$(lapack-version).tar.gz
+
+
+ # Get the CPU frequency.
+ if [ x$(on_mac_os) = xyes ]; then
+ core=2400
+ else
+ core=$$(cat /proc/cpuinfo | grep "cpu MHz" \
+ | head -n 1 \
+ | sed "s/.*: \([0-9.]*\).*/\1/")
+ fi
+
+ # See if the shared libraries should be build for a single CPU
+ # thread or multiple threads.
+ N=$$(nproc)
+ srcdir=$$(pwd)/reproduce/src/make
+ if [ $$N = 1 ]; then
+ sharedmk=$$srcdir/dependencies-atlas-single.mk
+ else
+ sharedmk=$$srcdir/dependencies-atlas-multiple.mk
+ fi
+
+ # The linking step here doesn't recognize the `-Wl' in the
+ # `rpath_command'.
+ export LDFLAGS=-L$(ildir)
+
+ cd $(ddir)
+ tar xf $<
+ cd ATLAS
+ rm -rf build
+ mkdir build
+ cd build
+ ../configure -b 64 -D c -DPentiumCPS=$$core \
+ --with-netlib-lapack-tarfile=$(word 2, $^) \
+ --cripple-atlas-performance \
+ -Fa alg -fPIC --shared \
+ --prefix=$(idir)
+
+ # Do the basic build and the extra shared libraries.
+ make
+ cd lib && make -f $$sharedmk && cd ..
+
+ # Add RPATH to all the shared libraries.
+ for l in lib/*.so*; do patchelf --set-rpath $(ildir) $$l; done
+
+ # Install the libraires.
+ make install
+ cp -d lib/*.so* $(ildir)
+ [ -e lib/libptlapack.a ] && cp lib/libptlapack.a $(ildir)
+ ln -fs $(ildir)/libblas.so $(ildir)/libblas.so.3
+ ln -fs $(ildir)/liblapack.so.3.6.1 $(ildir)/liblapack.so
+ ln -fs $(ildir)/liblapack.so.3.6.1 $(ildir)/liblapack.so.3
+ exit 1
+ cd $(ddir)
+ rm -rf ATLAS
+ echo "Atlas is built" > $@
+
generated by cgit v1.2.1 (git 2.18.0) at 2024-06-30 21:22:24 +0000