diff options
Diffstat (limited to 'reproduce/software/make')
| -rw-r--r-- | reproduce/software/make/basic.mk | 46 | ||||
| -rw-r--r-- | reproduce/software/make/build-rules.mk | 2 | ||||
| -rw-r--r-- | reproduce/software/make/high-level.mk | 54 | ||||
| -rw-r--r-- | reproduce/software/make/python.mk | 4 |
4 files changed, 59 insertions, 47 deletions
diff --git a/reproduce/software/make/basic.mk b/reproduce/software/make/basic.mk index 745aeca..40c5a4e 100644 --- a/reproduce/software/make/basic.mk +++ b/reproduce/software/make/basic.mk @@ -144,10 +144,17 @@ backupservers_all = $(user_backup_urls) $(maneage_backup_urls) topbackupserver = $(word 1, $(backupservers_all)) backupservers = $(filter-out $(topbackupserver),$(backupservers_all)) - - - - +# When building in Apptainer containers, as of 2025-04-18, we need to +# configure Maneage as root (within the container). In such cases, we need +# to activate the 'FORCE_UNSAFE_CONFIGURE' environment variable to build +# some of the software. The 'if' statement is here to make sure we are in +# Apptainer: in other situations, the "unsafe" configure script shouldn't +# be activated. Note that this doesn't happen in Docker (where the Maneage +# source is in the same directory) because we build a non-root ('maneager' +# user there who executes the configure command. +unsafe-config = if [ $$(pwd) = "/home/maneager/source" ] \ + && [ $$(whoami) = root ]; then \ + export FORCE_UNSAFE_CONFIGURE=1; fi @@ -261,11 +268,8 @@ $(ibidir)/low-level-links: $(ibidir)/grep-$(grep-version) \ # # The first set of programs to be built are those that we need to unpack # the source code tarballs of each program. We have already installed Lzip -# before calling 'basic.mk', so it is present and working. Hence we first -# build the Lzipped tarball of Gzip, then use our own Gzip to unpack the -# tarballs of the other compression programs. Once all the compression -# programs/libraries are complete, we build our own GNU Tar and continue -# with other software. +# before calling 'basic.mk', so it is present and working. So the only +# prerequisites of these (until reaching Tar) is the necessary directories. $(lockdir): | $(BDIR); mkdir $@ $(ibidir)/gzip-$(gzip-version): | $(ibdir) $(ildir) $(lockdir) tarball=gzip-$(gzip-version).tar.lz @@ -273,13 +277,13 @@ $(ibidir)/gzip-$(gzip-version): | $(ibdir) $(ildir) $(lockdir) $(call gbuild, gzip-$(gzip-version), static, , V=1) echo "GNU Gzip $(gzip-version)" > $@ -$(ibidir)/xz-$(xz-version): $(ibidir)/gzip-$(gzip-version) +$(ibidir)/xz-$(xz-version): | $(ibdir) $(ildir) $(lockdir) tarball=xz-$(xz-version).tar.lz $(call import-source, $(xz-url), $(xz-checksum)) $(call gbuild, xz-$(xz-version), static) echo "XZ Utils $(xz-version)" > $@ -$(ibidir)/bzip2-$(bzip2-version): $(ibidir)/gzip-$(gzip-version) +$(ibidir)/bzip2-$(bzip2-version): | $(ibdir) $(ildir) $(lockdir) # Download the tarball. tarball=bzip2-$(bzip2-version).tar.lz @@ -308,7 +312,7 @@ $(ibidir)/bzip2-$(bzip2-version): $(ibidir)/gzip-$(gzip-version) fi cd $(ddir) rm -rf $$tdir - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions cd $$tdir $(shsrcdir)/prep-source.sh $(ibdir) sed -e 's@\(ln -s -f \)$$(PREFIX)/bin/@\1@' Makefile \ @@ -330,7 +334,7 @@ $(ibidir)/bzip2-$(bzip2-version): $(ibidir)/gzip-$(gzip-version) # # Note for a static-only build: Zlib's './configure' doesn't use Autoconf's # configure script, it just accepts a direct '--static' option. -$(ibidir)/zlib-$(zlib-version): $(ibidir)/gzip-$(gzip-version) +$(ibidir)/zlib-$(zlib-version): | $(ibdir) $(ildir) $(lockdir) tarball=zlib-$(zlib-version).tar.lz $(call import-source, $(zlib-url), $(zlib-checksum)) $(call gbuild, zlib-$(zlib-version)) @@ -351,6 +355,7 @@ $(ibidir)/tar-$(tar-version): \ # a bottleneck here: only making Tar. So its more efficient to built # it on multiple threads (even when the user's Make doesn't pass down # the number of threads). + $(call unsafe-config) tarball=tar-$(tar-version).tar.lz $(call import-source, $(tar-url), $(tar-checksum)) $(call gbuild, tar-$(tar-version), , , -j$(numthreads) V=1) @@ -615,7 +620,7 @@ $(ibidir)/perl-$(perl-version): $(ibidir)/patchelf-$(patchelf-version) | awk '{printf("%d.%d", $$1, $$2)}') cd $(ddir) rm -rf perl-$(perl-version) - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions cd perl-$(perl-version) $(shsrcdir)/prep-source.sh $(ibdir) ./Configure -des \ @@ -675,14 +680,15 @@ $(ibidir)/coreutils-$(coreutils-version): \ $(ibidir)/perl-$(perl-version) \ $(ibidir)/openssl-$(openssl-version) -# Import the source tarball. +# Import, unpack and enter the source directory. + $(call unsafe-config) tarball=coreutils-$(coreutils-version).tar.lz $(call import-source, $(coreutils-url), $(coreutils-checksum)) # Unpack and enter the source. cd $(ddir) rm -rf coreutils-$(coreutils-version) - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions cd coreutils-$(coreutils-version) $(shsrcdir)/prep-source.sh $(ibdir) @@ -696,7 +702,7 @@ $(ibidir)/coreutils-$(coreutils-version): \ # Fix RPATH if necessary. if [ -f $(ibdir)/patchelf ]; then make SHELL=$(ibdir)/bash install DESTDIR=junkinst - unalias ls || true # avoid decorated 'ls' commands with extra characters + unalias ls || true # Not decorated 'ls' (with extra characters). instprogs=$$(ls junkinst/$(ibdir)) for f in $$instprogs; do $(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/$$f @@ -721,7 +727,7 @@ $(ibidir)/podlators-$(podlators-version): $(ibidir)/perl-$(perl-version) $(call import-source, $(podlators-url), $(podlators-checksum)) cd $(ddir) rm -rf podlators-$(podlators-version) - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions cd podlators-$(podlators-version) $(shsrcdir)/prep-source.sh $(ibdir) perl Makefile.PL @@ -1400,7 +1406,7 @@ $(ibidir)/gcc-$(gcc-version): $(ibidir)/binutils-$(binutils-version) # Unpack GCC and prepare the 'build' directory inside it for all # the built files. rm -rf gcc-$(gcc-version) - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions if [ $$odir != $(ddir) ]; then ln -s $$odir/gcc-$(gcc-version) $(ddir)/gcc-$(gcc-version) fi @@ -1530,7 +1536,7 @@ $(ibidir)/lzip-$(lzip-version): $(ibidir)/gcc-$(gcc-version) unpackdir=lzip-$(lzip-version) cd $(ddir) rm -rf $$unpackdir - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions cd $$unpackdir $(shsrcdir)/prep-source.sh $(ibdir) ./configure --build --check --installdir="$(ibdir)" diff --git a/reproduce/software/make/build-rules.mk b/reproduce/software/make/build-rules.mk index 62cb6d5..463fbbf 100644 --- a/reproduce/software/make/build-rules.mk +++ b/reproduce/software/make/build-rules.mk @@ -160,7 +160,7 @@ uncompress = csuffix=$$(echo $$utarball \ intarrm=0; \ intar=$$utarball; \ fi; \ - if tar -xf $$intar; then \ + if tar -xf $$intar --no-same-owner --no-same-permissions; then \ if [ x$$intarrm = x1 ]; then rm $$intar; fi; \ else \ echo; echo "Tar error"; exit 1; \ diff --git a/reproduce/software/make/high-level.mk b/reproduce/software/make/high-level.mk index c81f0b9..4ed5d62 100644 --- a/reproduce/software/make/high-level.mk +++ b/reproduce/software/make/high-level.mk @@ -348,7 +348,8 @@ $(ibidir)/atlas-$(atlas-version): # 'rpath_command'. export LDFLAGS=-L$(ildir) cd $(ddir) - tar -xf $(tdir)/atlas-$(atlas-version).tar.lz + tar -xf $(tdir)/atlas-$(atlas-version).tar.lz \ + --no-same-owner --no-same-permissions cd ATLAS $(shsrcdir)/prep-source.sh $(ibdir) rm -rf build @@ -405,7 +406,7 @@ $(ibidir)/boost-$(boost-version): \ rm -rf $(ddir)/$$unpackdir topdir=$(pwd) cd $(ddir) - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions cd $$unpackdir $(shsrcdir)/prep-source.sh $(ibdir) ./bootstrap.sh --prefix=$(idir) --with-libraries=all \ @@ -427,7 +428,8 @@ $(ibidir)/cfitsio-$(cfitsio-version): # systems. So we need to change it to our library installation # path. It doesn't affect GNU/Linux, so we'll just do it in any case # to keep things clean. - topdir=$(pwd); cd $(ddir); tar -xf $(tdir)/$$tarball + topdir=$(pwd); cd $(ddir) + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions customtar=cfitsio-$(cfitsio-version)-custom.tar.gz cd cfitsio-$(cfitsio-version) sed -i -e's|@rpath|$(ildir)|g' configure @@ -467,7 +469,8 @@ $(ibidir)/eigen-$(eigen-version): tarball=eigen-$(eigen-version).tar.lz $(call import-source, $(eigen-url), $(eigen-checksum)) rm -rf $(ddir)/eigen-eigen-* - topdir=$(pwd); cd $(ddir); tar -xf $(tdir)/$$tarball + topdir=$(pwd); cd $(ddir) + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions cd eigen-$(eigen-version) if ! [ -d $(iidir)/eigen3 ]; then mkdir $(iidir)/eigen3; fi cp -r Eigen/* $(iidir)/eigen3/ # Some expect 'eigen3'. @@ -597,7 +600,7 @@ $(ibidir)/healpix-$(healpix-version): $(healpix-python-dep) \ fi rm -rf $(ddir)/Healpix_$(healpix-version) topdir=$(pwd); cd $(ddir); - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions cd Healpix_$(healpix-version) $(shsrcdir)/prep-source.sh $(ibdir) cd src/C/autotools @@ -689,7 +692,7 @@ $(ibidir)/libpaper-$(libpaper-version): \ # Unpack, build the configure system, build and install. cd $(ddir) - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions unpackdir=libpaper-$(libpaper-version) cd $$unpackdir $(shsrcdir)/prep-source.sh $(ibdir) @@ -824,7 +827,7 @@ $(ibidir)/ninjabuild-$(ninjabuild-version): $(ibidir)/cmake-$(cmake-version) tarball=ninjabuild-$(ninjabuild-version).tar.lz $(call import-source, $(ninjabuild-url), $(ninjabuild-checksum)) cd $(ddir) - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions cd ninjabuild-$(ninjabuild-version) cmake -Bbuild-cmake cmake --build build-cmake -j$(numthreads) @@ -839,7 +842,7 @@ $(ibidir)/openblas-$(openblas-version): $(call import-source, $(openblas-url), $(openblas-checksum)) if [ x$(on_mac_os) = xyes ]; then export CC=clang; fi cd $(ddir) - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions cd openblas-$(openblas-version) $(shsrcdir)/prep-source.sh $(ibdir) make -j$(numthreads) @@ -1048,7 +1051,7 @@ $(ibidir)/astrometrynet-$(astrometrynet-version): \ # 'astrometrynet' cd $(ddir) rm -rf astrometry.net-$(astrometrynet-version) - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions cd astrometry.net-$(astrometrynet-version) $(shsrcdir)/prep-source.sh $(ibdir) sed -e 's|cat /proc/cpuinfo|echo "Ignoring CPU info"|' \ @@ -1087,7 +1090,7 @@ $(ibidir)/cdsclient-$(cdsclient-version): tarball=cdsclient-$(cdsclient-version).tar.lz $(call import-source, $(cdsclient-url), $(cdsclient-checksum)) cd $(ddir) - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions cd cdsclient-$(cdsclient-version) $(shsrcdir)/prep-source.sh $(ibdir) touch * @@ -1120,7 +1123,7 @@ $(ibidir)/cmake-$(cmake-version): # Go into the unpacked directory and prepare CMake. cd $(ddir) rm -rf cmake-$(cmake-version) - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions cd cmake-$(cmake-version) $(shsrcdir)/prep-source.sh $(ibdir) @@ -1186,7 +1189,7 @@ $(ibidir)/ghostscript-$(ghostscript-version): \ # '-DPNG_ARM_NEON_OPT=0' prevents an arm64 'neon' library from being # required at compile time. cd $(ddir) - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions cd ghostscript-$(ghostscript-version) $(shsrcdir)/prep-source.sh $(ibdir) ./configure --prefix=$(idir) \ @@ -1209,9 +1212,9 @@ $(ibidir)/ghostscript-$(ghostscript-version): \ # Install the fonts. tar -xvf $(tdir)/ghostscript-fonts-std-$(ghostscript-fonts-std-version).tar.lz \ - -C $(idir)/share/ghostscript + -C $(idir)/share/ghostscript --no-same-owner --no-same-permissions tar -xvf $(tdir)/ghostscript-fonts-gnu-$(ghostscript-fonts-gnu-version).tar.lz \ - -C $(idir)/share/ghostscript + -C $(idir)/share/ghostscript --no-same-owner --no-same-permissions fc-cache -v $(idir)/share/ghostscript/fonts/ echo; echo "Ghostscript fonts added to Fontconfig."; echo; @@ -1248,7 +1251,7 @@ $(ibidir)/icu-$(icu-version): $(ibidir)/python-$(python-version) tarball=icu-$(icu-version).tar.lz $(call import-source, $(icu-url), $(icu-checksum)) cd $(ddir) - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions unpackdir=icu-$(icu-version) cd $$unpackdir $(shsrcdir)/prep-source.sh $(ibdir) @@ -1317,7 +1320,7 @@ $(ibidir)/imfit-$(imfit-version): \ cd $(ddir) unpackdir=imfit-$(imfit-version) rm -rf $$unpackdir - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions cd $$unpackdir $(shsrcdir)/prep-source.sh $(ibdir) sed -i 's|/usr/local|$(idir)|g' SConstruct @@ -1365,7 +1368,8 @@ $(ibidir)/minizip-$(minizip-version): $(ibidir)/automake-$(automake-version) unpackdir=minizip-$(minizip-version) rm -rf $$unpackdir mkdir $$unpackdir - tar -xf $(tdir)/$$tarball -C$$unpackdir --strip-components=1 + tar -xf $(tdir)/$$tarball -C$$unpackdir --strip-components=1 \ + --no-same-owner --no-same-permissions cd $$unpackdir $(shsrcdir)/prep-source.sh $(ibdir) ./configure --prefix=$(idir) @@ -1427,7 +1431,7 @@ $(ibidir)/netpbm-$(netpbm-version): \ cd $(ddir) unpackdir=netpbm-$(netpbm-version) rm -rf $$unpackdir - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions cd $$unpackdir $(shsrcdir)/prep-source.sh $(ibdir) @@ -1547,7 +1551,7 @@ $(ibidir)/scons-$(scons-version): $(ibidir)/python-$(python-version) cd $(ddir) unpackdir=scons-$(scons-version) rm -rf $$unpackdir - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions cd $$unpackdir $(shsrcdir)/prep-source.sh $(ibdir) @@ -1593,7 +1597,7 @@ $(ibidir)/sextractor-$(sextractor-version): \ unpackdir=sextractor-$(sextractor-version) cd $(ddir) rm -rf $$unpackdir - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions cd $$unpackdir # See comment above 'missfits' for '-fcommon'. @@ -1694,7 +1698,7 @@ $(ibidir)/util-linux-$(util-linux-version): \ # explained above). As shown below, later, we'll put a symbolic link # of all the necessary binaries in the main '$(idir)/bin'. cd $(ddir) - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions cd util-linux-$(util-linux-version) $(shsrcdir)/prep-source.sh $(ibdir) @@ -1799,7 +1803,7 @@ $(ibidir)/vim-$(vim-version): tarball=vim-$(vim-version).tar.lz $(call import-source, $(vim-url), $(vim-checksum)) cd $(ddir) - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions unpackdir=vim-$(vim-version) cd $(ddir)/$$unpackdir $(shsrcdir)/prep-source.sh $(ibdir) @@ -1869,7 +1873,8 @@ $(itidir)/texlive-ready-tlmgr: reproduce/software/config/texlive.conf @topdir=$$(pwd) cd $(ddir) rm -rf install-tl-* - tar -xf $(tdir)/install-tl-unx.tar.gz + tar -xf $(tdir)/install-tl-unx.tar.gz \ + --no-same-owner --no-same-permissions cd install-tl-* $(shsrcdir)/prep-source.sh $(ibdir) sed -e's|@installdir[@]|$(idir)|g' \ @@ -1956,7 +1961,8 @@ $(itidir)/texlive-ready-tlmgr: reproduce/software/config/texlive.conf "$(backupservers)"; then cd $(ddir) rm -rf install-tl-* - tar -xf $(tdir)/install-tl-unx.tar.gz + tar -xf $(tdir)/install-tl-unx.tar.gz \ + --no-same-owner --no-same-permissions cd install-tl-* $(shsrcdir)/prep-source.sh $(ibdir) sed -e's|@installdir[@]|$(idir)|g' \ diff --git a/reproduce/software/make/python.mk b/reproduce/software/make/python.mk index c017fd2..c994e3f 100644 --- a/reproduce/software/make/python.mk +++ b/reproduce/software/make/python.mk @@ -99,7 +99,7 @@ $(ibidir)/python-$(python-version): $(ibidir)/libffi-$(libffi-version) # Unpack the tarball (see below for the necessary modification). cd $(ddir) unpackdir=python-$(python-version) - tar -xf $(tdir)/$$tarball + tar -xf $(tdir)/$$tarball --no-same-owner --no-same-permissions cd $$unpackdir $(shsrcdir)/prep-source.sh $(ibdir) @@ -215,7 +215,7 @@ pybuild = cd $(ddir); \ packagedir=$(strip $(2)); \ if (printf "$$packagedir" | grep "[a-z][a-z]"); then rm -rf $$packagedir; fi; \ printf "\nStarting to install python package with maneage pybuild rule: $(4)\n ..."; \ - if ! $(1) $(tdir)/$$tarball; then \ + if ! $(1) $(tdir)/$$tarball --no-same-owner --no-same-permissions; then \ echo; echo "Tar error"; exit 1; \ fi; \ cd $$packagedir; \ |