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-rw-r--r--reproduce/software/make/README.md2
-rw-r--r--reproduce/software/make/atlas-multiple.mk4
-rw-r--r--reproduce/software/make/atlas-single.mk4
-rw-r--r--reproduce/software/make/basic.mk780
-rw-r--r--reproduce/software/make/build-rules.mk73
-rw-r--r--reproduce/software/make/high-level.mk881
-rw-r--r--reproduce/software/make/python.mk313
-rw-r--r--reproduce/software/make/r-cran.mk487
-rw-r--r--reproduce/software/make/xorg.mk33
9 files changed, 1598 insertions, 979 deletions
diff --git a/reproduce/software/make/README.md b/reproduce/software/make/README.md
index 8d12d7a..76ab5c1 100644
--- a/reproduce/software/make/README.md
+++ b/reproduce/software/make/README.md
@@ -1,7 +1,7 @@
Software building instructions
------------------------------
-Copyright (C) 2019-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org>\
+Copyright (C) 2019-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org>\
See the end of the file for license conditions.
This directory contains Makefiles that are called by the high-level
diff --git a/reproduce/software/make/atlas-multiple.mk b/reproduce/software/make/atlas-multiple.mk
index e782578..b92fbfc 100644
--- a/reproduce/software/make/atlas-multiple.mk
+++ b/reproduce/software/make/atlas-multiple.mk
@@ -3,12 +3,12 @@
# ------------------------------------------------------------------------
# !!!!! IMPORTANT NOTES !!!!!
#
-# This Makefile will be run during the initial `./project configure'
+# This Makefile will be run during the initial './project configure'
# script. It is not included into the reproduction pipe after that.
#
# ------------------------------------------------------------------------
#
-# Copyright (C) 2019-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+# Copyright (C) 2019-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org>
#
# This Makefile is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
diff --git a/reproduce/software/make/atlas-single.mk b/reproduce/software/make/atlas-single.mk
index 0934b66..720bad6 100644
--- a/reproduce/software/make/atlas-single.mk
+++ b/reproduce/software/make/atlas-single.mk
@@ -3,12 +3,12 @@
# ------------------------------------------------------------------------
# !!!!! IMPORTANT NOTES !!!!!
#
-# This Makefile will be run during the initial `./project configure'
+# This Makefile will be run during the initial './project configure'
# script. It is not included into the reproduction pipe after that.
#
# ------------------------------------------------------------------------
#
-# Copyright (C) 2019-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+# Copyright (C) 2019-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org>
#
# This Makefile is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
diff --git a/reproduce/software/make/basic.mk b/reproduce/software/make/basic.mk
index 6910593..1c96b3f 100644
--- a/reproduce/software/make/basic.mk
+++ b/reproduce/software/make/basic.mk
@@ -4,7 +4,7 @@
# ------------------------------------------------------------------------
# !!!!! IMPORTANT NOTES !!!!!
#
-# This Makefile will be run by the initial `./project configure' script. It
+# This Makefile will be run by the initial './project configure' script. It
# is not included into the project afterwards.
#
# This Makefile builds low-level and basic tools that are necessary in any
@@ -21,8 +21,9 @@
#
# ------------------------------------------------------------------------
#
-# Copyright (C) 2018-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org>
-# Copyright (C) 2019-2021 Raul Infante-Sainz <infantesainz@gmail.com>
+# Copyright (C) 2018-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+# Copyright (C) 2019-2022 Raul Infante-Sainz <infantesainz@gmail.com>
+# Copyright (C) 2022 Pedram Ashofteh Ardakani <pedramardakani@pm.me>
#
# This Makefile is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
@@ -90,17 +91,20 @@ export CPPFLAGS := -I$(idir)/include $(CPPFLAGS) \
-Wno-nullability-completeness
export LDFLAGS := $(rpath_command) -L$(ildir) $(LDFLAGS)
+# Disable built-in rules (which are not needed here!)
+.SUFFIXES:
+
# This is the "basic" tools where we are relying on the host operating
# system, but are slowly populating our basic software envirnoment. To run
-# (system or template) programs, `LD_LIBRARY_PATH' is necessary, so here,
+# (system or template) programs, 'LD_LIBRARY_PATH' is necessary, so here,
# we'll first tell the programs to look into any possible pre-defined
-# `LD_LIBRARY_PATH', then we'll add our own newly installed libraries. We
+# 'LD_LIBRARY_PATH', then we'll add our own newly installed libraries. We
# will also make sure that there is no "current directory" in it (by
-# removing a starting or trailing `:' and any occurance of `::'.
+# removing a starting or trailing ':' and any occurance of '::'.
export LD_LIBRARY_PATH := $(shell echo $(LD_LIBRARY_PATH):$(ildir) \
| sed -e's/::/:/g' -e's/^://' -e's/:$$//')
-# RPATH is automatically written in macOS, so `DYLD_LIBRARY_PATH' is
+# RPATH is automatically written in macOS, so 'DYLD_LIBRARY_PATH' is
# ultimately redundant. But on some systems, even having a single value
# causes crashs (see bug #56682). So we'll just give it no value at all.
export DYLD_LIBRARY_PATH :=
@@ -150,10 +154,10 @@ backupservers = $(filter-out $(topbackupserver),$(backupservers_all))
#
# About ccache: ccache acts like a wrapper over the C compiler and is made
# to avoid/speed-up compiling of identical files in a system (it is
-# commonly used on large servers). It actually makes `gcc' or `g++' a
+# commonly used on large servers). It actually makes 'gcc' or 'g++' a
# symbolic link to itself so it can control them internally. So, for our
# purpose here, it is very annoying and can cause many complications. We
-# thus remove any part of PATH of that has `ccache' in it before making
+# thus remove any part of PATH of that has 'ccache' in it before making
# symbolic links to the programs we are not building ourselves.
#
# The double quotations after the starting 'export PATH' are necessary in
@@ -172,9 +176,9 @@ makelink = origpath="$$PATH"; \
| tr '\n' :)"; \
if type $(1) > /dev/null 2> /dev/null; then \
if [ x$(3) = x ]; then \
- ln -sf "$$(realpath $$(which $(1)))" $(ibdir)/$(1); \
+ ln -sf "$$(realpath $$(command -v $(1)))" $(ibdir)/$(1); \
else \
- ln -sf "$$(realpath $$(which $(1)))" $(ibdir)/$(3); \
+ ln -sf "$$(realpath $$(command -v $(1)))" $(ibdir)/$(3); \
fi; \
else \
if [ "x$(strip $(2))" = xmandatory ]; then \
@@ -189,11 +193,11 @@ $(ibdir) $(ildir):; mkdir $@
$(ibidir)/low-level-links: $(ibidir)/grep-$(grep-version) \
| $(ibdir) $(ildir)
- # Hardware specific
+# Hardware specific
$(call makelink,lp) # For printing, necessary for R.
$(call makelink,lpr) # For printing, necessary for R.
- # Mac OS specific
+# Mac OS specific
$(call makelink,mig)
$(call makelink,xcrun)
$(call makelink,sysctl)
@@ -201,14 +205,14 @@ $(ibidir)/low-level-links: $(ibidir)/grep-$(grep-version) \
$(call makelink,dsymutil)
$(call makelink,install_name_tool)
- # On Mac OS, libtool is different compared to GNU Libtool. The
- # libtool we'll build in the high-level dependencies has the
- # executable name `glibtool'.
+# On Mac OS, libtool is different compared to GNU Libtool. The
+# libtool we'll build in the high-level dependencies has the
+# executable name 'glibtool'.
$(call makelink,libtool)
- # Necessary libraries:
- # Libdl (for dynamic loading libraries at runtime)
- # POSIX Threads library for multi-threaded programs.
+# Necessary libraries:
+# Libdl (for dynamic loading libraries at runtime)
+# POSIX Threads library for multi-threaded programs.
for l in dl pthread; do
if [ -f /usr/lib/lib$$l.a ]; then
for f in /usr/lib/lib$$l.*; do
@@ -218,8 +222,8 @@ $(ibidir)/low-level-links: $(ibidir)/grep-$(grep-version) \
fi
done
- # We want this to be empty (so it doesn't interefere with the other
- # files in `ibidir'.
+# We want this to be empty (so it doesn't interefere with the other
+# files in 'ibidir'.
touch $@
@@ -249,26 +253,26 @@ $(ibidir)/gzip-$(gzip-version): | $(ibdir) $(ildir) $(lockdir)
echo "GNU Gzip $(gzip-version)" > $@
$(ibidir)/xz-$(xz-version): $(ibidir)/gzip-$(gzip-version)
- tarball=xz-$(xz-version).tar.gz
+ tarball=xz-$(xz-version).tar.lz
$(call import-source, $(xz-url), $(xz-checksum))
$(call gbuild, xz-$(xz-version), static)
echo "XZ Utils $(xz-version)" > $@
$(ibidir)/bzip2-$(bzip2-version): $(ibidir)/gzip-$(gzip-version)
- # Download the tarball.
- tarball=bzip2-$(bzip2-version).tar.gz
+# Download the tarball.
+ tarball=bzip2-$(bzip2-version).tar.lz
$(call import-source, $(bzip2-url), $(bzip2-checksum))
- # Bzip2 doesn't have a `./configure' script, and its Makefile
- # doesn't build a shared library. So we can't use the `gbuild'
- # function here and we need to take some extra steps (inspired
- # from the GNU/Linux from Scratch (LFS) guide for Bzip2):
- # 1) The `sed' call is for relative installed symbolic links.
- # 2) The special Makefile-libbz2_so builds shared libraries.
- #
- # NOTE: the major version number appears in the final symbolic
- # link.
+# Bzip2 doesn't have a './configure' script, and its Makefile doesn't
+# build a shared library. So we can't use the 'gbuild' function here
+# and we need to take some extra steps (inspired from the GNU/Linux
+# from Scratch (LFS) guide for Bzip2):
+#
+# 1) The 'sed' call is for relative installed symbolic links.
+# 2) The special Makefile-libbz2_so builds shared libraries.
+#
+# NOTE: the major version number appears in the final symbolic link.
tdir=bzip2-$(bzip2-version)
if [ $(static_build) = yes ]; then
makecommand="make LDFLAGS=-static"
@@ -283,7 +287,7 @@ $(ibidir)/bzip2-$(bzip2-version): $(ibidir)/gzip-$(gzip-version)
fi
cd $(ddir)
rm -rf $$tdir
- tar xf $(tdir)/$$tarball
+ tar -xf $(tdir)/$$tarball
cd $$tdir
sed -e 's@\(ln -s -f \)$$(PREFIX)/bin/@\1@' Makefile \
> Makefile.sed
@@ -296,14 +300,13 @@ $(ibidir)/bzip2-$(bzip2-version): $(ibidir)/gzip-$(gzip-version)
cd ..
rm -rf $$tdir
cd $(ildir)
- ln -fs libbz2.so.1.0 libbz2.so
+ ln -fs libbz2.so.$(bzip2-version) libbz2.so
echo "Bzip2 $(bzip2-version)" > $@
$(ibidir)/unzip-$(unzip-version): $(ibidir)/gzip-$(gzip-version)
- tarball=unzip-$(unzip-version).tar.gz
- v=$$(echo $(unzip-version) | sed -e's/\.//')
+ tarball=unzip-$(unzip-version).tar.lz
$(call import-source, $(unzip-url), $(unzip-checksum))
- $(call gbuild, unzip$$v, static,, \
+ $(call gbuild, unzip-$(unzip-version), static,, \
-f unix/Makefile generic \
CFLAGS="-DBIG_MEM -DMMAP",,pwd, \
-f unix/Makefile generic \
@@ -311,10 +314,9 @@ $(ibidir)/unzip-$(unzip-version): $(ibidir)/gzip-$(gzip-version)
echo "Unzip $(unzip-version)" > $@
$(ibidir)/zip-$(zip-version): $(ibidir)/gzip-$(gzip-version)
- tarball=zip-$(zip-version).tar.gz
- v=$$(echo $(zip-version) | sed -e's/\.//')
+ tarball=zip-$(zip-version).tar.lz
$(call import-source, $(zip-url), $(zip-checksum))
- $(call gbuild, zip$$v, static,, \
+ $(call gbuild, zip-$(zip-version), static,, \
-f unix/Makefile generic \
CFLAGS="-DBIG_MEM -DMMAP",,pwd, \
-f unix/Makefile generic \
@@ -324,10 +326,10 @@ $(ibidir)/zip-$(zip-version): $(ibidir)/gzip-$(gzip-version)
# Some programs (like Wget and CMake) that use zlib need it to be dynamic
# so they use our custom build. So we won't force a static-only build.
#
-# Note for a static-only build: Zlib's `./configure' doesn't use Autoconf's
-# configure script, it just accepts a direct `--static' option.
+# Note for a static-only build: Zlib's './configure' doesn't use Autoconf's
+# configure script, it just accepts a direct '--static' option.
$(ibidir)/zlib-$(zlib-version): $(ibidir)/gzip-$(gzip-version)
- tarball=zlib-$(zlib-version).tar.gz
+ tarball=zlib-$(zlib-version).tar.lz
$(call import-source, $(zlib-url), $(zlib-checksum))
$(call gbuild, zlib-$(zlib-version))
echo "Zlib $(zlib-version)" > $@
@@ -344,11 +346,12 @@ $(ibidir)/tar-$(tar-version): \
$(ibidir)/zlib-$(zlib-version) \
$(ibidir)/bzip2-$(bzip2-version) \
$(ibidir)/unzip-$(unzip-version)
- # Since all later programs depend on Tar, the configuration will be
- # stuck here, only making Tar. So its more efficient to built it on
- # multiple threads (when the user's Make doesn't pass down the
- # number of threads).
- tarball=tar-$(tar-version).tar.gz
+
+# Since all later programs depend on Tar, the configuration will hit
+# a bottleneck here: only making Tar. So its more efficient to built
+# it on multiple threads (even when the user's Make doesn't pass down
+# the number of threads).
+ tarball=tar-$(tar-version).tar.lz
$(call import-source, $(tar-url), $(tar-checksum))
$(call gbuild, tar-$(tar-version), , , -j$(numthreads) V=1)
echo "GNU Tar $(tar-version)" > $@
@@ -370,7 +373,7 @@ $(ibidir)/tar-$(tar-version): \
# a prerequisite (and forgetting in others causing bugs), we'll put it as a
# dependancy of 'tar'.
$(ibidir)/patchelf-$(patchelf-version): $(ibidir)/tar-$(tar-version)
- tarball=patchelf-$(patchelf-version).tar.gz
+ tarball=patchelf-$(patchelf-version).tar.lz
$(call import-source, $(patchelf-url), $(patchelf-checksum))
if [ x$(on_mac_os) = xyes ]; then
echo "" > $@
@@ -395,69 +398,69 @@ $(ibidir)/patchelf-$(patchelf-version): $(ibidir)/tar-$(tar-version)
# basic dependencies.
#
# Unfortunately Make needs dynamic linking in two instances: when loading
-# objects (dynamically linked libraries), or when using the `getpwnam'
+# objects (dynamically linked libraries), or when using the 'getpwnam'
# function (for tilde expansion). The first can be disabled with
-# `--disable-load', but unfortunately I don't know any way to fix the
+# '--disable-load', but unfortunately I don't know any way to fix the
# second. So, we'll have to build it dynamically for now.
$(ibidir)/ncurses-$(ncurses-version): $(ibidir)/patchelf-$(patchelf-version)
- tarball=ncurses-$(ncurses-version).tar.gz
+ tarball=ncurses-$(ncurses-version).tar.lz
$(call import-source, $(ncurses-url), $(ncurses-checksum))
- # Delete the library that will be installed (so we can make sure
- # the build process completed afterwards and reset the links).
+# Delete the library that will be installed (so we can make sure the
+# build process completed afterwards and reset the links).
rm -f $(ildir)/libncursesw*
- # Delete the (possibly existing) low-level programs that depend on
- # `readline', and thus `ncurses'. Since these programs are actually
- # used during the building of `ncurses', we need to delete them so
- # the build process doesn't use the project's Bash and AWK, but the
- # host's.
+# Delete the (possibly existing) low-level programs that depend on
+# 'readline', and thus 'ncurses'. Since these programs are actually
+# used during the building of 'ncurses', we need to delete them so
+# the build process doesn't use the project's Bash and AWK, but the
+# host's.
rm -f $(ibdir)/bash* $(ibdir)/awk* $(ibdir)/gawk*
- # Standard build process.
+# Standard build process.
$(call gbuild, ncurses-$(ncurses-version), static, \
--with-shared --enable-rpath --without-normal \
--without-debug --with-cxx-binding \
--with-cxx-shared --enable-widec --enable-pc-files \
--with-pkg-config=$(ildir)/pkgconfig, -j$(numthreads))
- # Unfortunately there are many problems with `ncurses' using
- # "normal" (or 8-bit) characters. The standard way that will work
- # is to build it with wide character mode as you see above in the
- # configuration (or the `w' prefix you see below). Also, most
- # programs (and in particular Bash and AWK), first look for other
- # (mostly obsolete) libraries like tinfo, which define the same
- # symbols. The links below address both situations: we need to fool
- # higher-level packages to find this library even if they aren't
- # explicitly mentioning its name correctly (as a value to `-l' at
- # link time in their configure scripts).
- #
- # This part is taken from the Arch GNU/Linux build script[1], then
- # extended to Mac thanks to Homebrew's script [2].
- #
- # [1] https://git.archlinux.org/svntogit/packages.git/tree/trunk/PKGBUILD?h=packages/ncurses
- # [2] https://github.com/Homebrew/homebrew-core/blob/master/Formula/ncurses.rb
- #
- # Since we can't have comments, in the connected script, here is a
- # summary:
- #
- # 1. We find the actual suffix of the library, from the file that
- # is not a symbolic link (starting with `-' in the output of
- # `ls -l').
- #
- # 2. We make symbolic links to all the "ncurses", "ncurses++",
- # "form", "panel" and "menu" libraries to point to their
- # "wide" (character) library.
- #
- # 3. We make symbolic links to the "tic" and "tinfo" libraries to
- # point to the same `libncursesw' library.
- #
- # 4. Some programs link with "curses" (not "ncurses", notice the
- # starting "n"), so we'll also make links for these to point
- # to the `libncursesw' library.
- #
- # 5. A link is made to also be able to include files from the
- # `ncurses' headers.
+# Unfortunately there are many problems with 'ncurses' using "normal"
+# (or 8-bit) characters. The standard way that will work is to build
+# it with wide character mode as you see above in the configuration
+# (or the 'w' prefix you see below). Also, most programs (and in
+# particular Bash and AWK), first look for other (mostly obsolete)
+# libraries like tinfo, which define the same symbols. The links
+# below address both situations: we need to fool higher-level
+# packages to find this library even if they aren't explicitly
+# mentioning its name correctly (as a value to '-l' at link time in
+# their configure scripts).
+#
+# This part is taken from the Arch GNU/Linux build script[1], then
+# extended to Mac thanks to Homebrew's script [2].
+#
+# [1] https://git.archlinux.org/svntogit/packages.git/tree/trunk/PKGBUILD?h=packages/ncurses
+# [2] https://github.com/Homebrew/homebrew-core/blob/master/Formula/ncurses.rb
+#
+# Since we can't have comments, in the connected script, here is a
+# summary:
+#
+# 1. We find the actual suffix of the library, from the file that
+# is not a symbolic link (starting with '-' in the output of 'ls
+# -l').
+#
+# 2. We make symbolic links to all the "ncurses", "ncurses++",
+# "form", "panel" and "menu" libraries to point to their "wide"
+# (character) library.
+#
+# 3. We make symbolic links to the "tic" and "tinfo" libraries to
+# point to the same 'libncursesw' library.
+#
+# 4. Some programs link with "curses" (not "ncurses", notice the
+# starting "n"), so we'll also make links for these to point to
+# the 'libncursesw' library.
+#
+# 5. A link is made to also be able to include files from the
+# 'ncurses' headers.
if [ x$(on_mac_os) = xyes ]; then so="dylib"; else so="so"; fi
if [ -f $(ildir)/libncursesw.$$so ]; then
@@ -489,7 +492,7 @@ $(ibidir)/ncurses-$(ncurses-version): $(ibidir)/patchelf-$(patchelf-version)
$(ibidir)/readline-$(readline-version): \
$(ibidir)/ncurses-$(ncurses-version)
- tarball=readline-$(readline-version).tar.gz
+ tarball=readline-$(readline-version).tar.lz
$(call import-source, $(readline-url), $(readline-checksum))
$(call gbuild, readline-$(readline-version), static, \
--with-curses --disable-install-examples, \
@@ -497,12 +500,12 @@ $(ibidir)/readline-$(readline-version): \
echo "GNU Readline $(readline-version)" > $@
-# IMPORTANT: Even though we have enabled `rpath', Bash doesn't write the
+# IMPORTANT: Even though we have enabled 'rpath', Bash doesn't write the
# absolute adddress of the libraries it depends on! Therefore, if we
-# configure Bash with `--with-installed-readline' (so the installed version
+# configure Bash with '--with-installed-readline' (so the installed version
# of Readline, that we build below as a prerequisite or AWK, is used) and
-# you run `ldd $(ibdir)/bash' on the resulting binary, it will say that it
-# is linking with the system's `readline'. But if you run that same command
+# you run 'ldd $(ibdir)/bash' on the resulting binary, it will say that it
+# is linking with the system's 'readline'. But if you run that same command
# within a rule in this project, you'll see that it is indeed linking with
# our own built readline.
#
@@ -510,11 +513,11 @@ $(ibidir)/readline-$(readline-version): \
# released as patches. Therefore we'll need to make our own fully-working
# and updated tarball to build the proper version of Bash. You download and
# apply them to the original tarball and make a new one with the following
-# series of commands (just replace `NUMBER' with the total number of
+# series of commands (just replace 'NUMBER' with the total number of
# patches that you want to apply).
#
# $ number=NUMBER
-# $ tar xf bash-5.0.tar.gz
+# $ tar -xf bash-5.0.tar.gz
# $ cd bash-5.0
# $ for i in $(seq 1 $number); do \
# pname=bash50-$(printf "%03d" $i); \
@@ -530,18 +533,18 @@ $(ibidir)/bash-$(bash-version): \
$(ibidir)/gettext-$(gettext-version) \
$(ibidir)/readline-$(readline-version)
- # Download the tarball.
+# Download the tarball.
tarball=bash-$(bash-version).tar.lz
$(call import-source, $(bash-url), $(bash-checksum))
- # Delete the (possibly) existing Bash executable in the project,
- # let it use the default shell of the host.
+# Delete the (possibly) existing Bash executable in the project,
+# let it use the default shell of the host.
rm -f $(ibdir)/bash
- # Bash has many `--enable' features which are already enabled by
- # default. As described in the manual, they are mainly useful when
- # you disable them all with `--enable-minimal-config' and enable a
- # subset using the `--enable' options.
+# Bash has many '--enable' features which are already enabled by
+# default. As described in the manual, they are mainly useful when
+# you disable them all with '--enable-minimal-config' and enable a
+# subset using the '--enable' options.
if [ "x$(static_build)" = xyes ]; then stopt="--enable-static-link"
else stopt=""
fi;
@@ -554,22 +557,20 @@ $(ibidir)/bash-$(bash-version): \
--with-curses=yes, \
-j$(numthreads))
- # Atleast on GNU/Linux systems, Bash doesn't include RPATH by
- # default. So, we have to manually include it, currently we are
- # only doing this on GNU/Linux systems (using the `patchelf'
- # program).
+# Atleast on GNU/Linux systems, Bash doesn't include RPATH by
+# default. So, we have to manually include it, currently we are only
+# doing this on GNU/Linux systems (using the 'patchelf' program).
if [ -f $(ibdir)/patchelf ]; then
$(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/bash;
fi
- # To be generic, some systems use the `sh' command to call the
- # shell. By convention, `sh' is just a symbolic link to the
- # preferred shell executable. So we'll define `$(ibdir)/sh' as a
- # symbolic link to the Bash that we just built and installed.
- #
- # Just to be sure that the installation step above went well,
- # before making the link, we'll see if the file actually exists
- # there.
+# To be generic, some systems use the 'sh' command to call the
+# shell. By convention, 'sh' is just a symbolic link to the preferred
+# shell executable. So we'll define '$(ibdir)/sh' as a symbolic link
+# to the Bash that we just built and installed.
+#
+# Just to be sure that the installation step above went well, before
+# making the link, we'll see if the file actually exists there.
ln -fs $(ibdir)/bash $(ibdir)/sh
echo "GNU Bash $(bash-version)" > $@
@@ -585,9 +586,9 @@ $(ibidir)/bash-$(bash-version): \
# Level 4: Most other programs
# ----------------------------
-# In Perl, The `-shared' flag will cause problems while building on macOS,
+# In Perl, The '-shared' flag will cause problems while building on macOS,
# so we'll only use this configuration option when we are GNU/Linux
-# systems. However, since the whole option must be used (which includes `='
+# systems. However, since the whole option must be used (which includes '='
# and empty space), its easier to define the variable as a Make variable
# outside the recipe, not as a shell variable inside it.
ifeq ($(on_mac_os),yes)
@@ -596,7 +597,7 @@ else
perl-conflddlflags = -Dlddlflags="-shared $$LDFLAGS"
endif
$(ibidir)/perl-$(perl-version): $(ibidir)/patchelf-$(patchelf-version)
- tarball=perl-$(perl-version).tar.gz
+ tarball=perl-$(perl-version).tar.lz
$(call import-source, $(perl-url), $(perl-checksum))
major_version=$$(echo $(perl-version) \
| sed -e's/\./ /g' \
@@ -606,7 +607,7 @@ $(ibidir)/perl-$(perl-version): $(ibidir)/patchelf-$(patchelf-version)
| awk '{printf("%d.%d", $$1, $$2)}')
cd $(ddir)
rm -rf perl-$(perl-version)
- tar xf $(tdir)/$$tarball
+ tar -xf $(tdir)/$$tarball
cd perl-$(perl-version)
./Configure -des \
-Dusethreads \
@@ -616,7 +617,7 @@ $(ibidir)/perl-$(perl-version): $(ibidir)/patchelf-$(patchelf-version)
-Dprivlib=$(idir)/share/perl$$major_version/core_perl \
-Darchlib=$(idir)/lib/perl$$major_version/$$base_version/core_perl \
-Dsitelib=$(idir)/share/perl$$major_version/site_perl \
- -Dsitearch=$(idir)/lib/perl$$major_version/$$basever/site_perl \
+ -Dsitearch=$(idir)/lib/perl$$major_version/$$base_version/site_perl \
-Dvendorlib=$(idir)/share/perl$$major_version/vendor_perl \
-Dvendorarch=$(idir)/lib/perl$$major_version/$$base_version/vendor_perl \
-Dscriptdir=$(idir)/bin/core_perl \
@@ -642,17 +643,17 @@ $(ibidir)/perl-$(perl-version): $(ibidir)/patchelf-$(patchelf-version)
# Coreutils
# ---------
#
-# For some reason, Coreutils doesn't include `rpath' in its installed
+# For some reason, Coreutils doesn't include 'rpath' in its installed
# executables (even though it says that by default its included and that
-# even when calling `--enable-rpath=yes'). So we have to manually add
-# `rpath' to Coreutils' executables after the standard build is
+# even when calling '--enable-rpath=yes'). So we have to manually add
+# 'rpath' to Coreutils' executables after the standard build is
# complete.
#
# One problem is that Coreutils installs many very basic executables which
# might be in used by other programs. So we must make sure that when
# Coreutils is being built, no other program is being built in
# parallel. The solution to the many executables it installs is to make a
-# fake installation (with `DESTDIR'), and get a list of the contents of the
+# fake installation (with 'DESTDIR'), and get a list of the contents of the
# directory to find the names.
#
# The echo after the PatchELF loop is to avoid a crash if the last
@@ -665,30 +666,30 @@ $(ibidir)/coreutils-$(coreutils-version): \
$(ibidir)/perl-$(perl-version) \
$(ibidir)/openssl-$(openssl-version)
- # Import, unpack and enter the source directory.
- tarball=coreutils-$(coreutils-version).tar.xz
+# Import, unpack and enter the source directory.
+ tarball=coreutils-$(coreutils-version).tar.lz
$(call import-source, $(coreutils-url), $(coreutils-checksum))
cd $(ddir)
rm -rf coreutils-$(coreutils-version)
- tar xf $(tdir)/$$tarball
+ tar -xf $(tdir)/$$tarball
cd coreutils-$(coreutils-version)
- # Set the configure script to use our shell, note that we can't
- # assume GNU SED here yet (it installs after Coreutils).
+# Set the configure script to use our shell, note that we can't
+# assume GNU SED here yet (it installs after Coreutils).
sed -e's|\#\! /bin/sh|\#\! $(ibdir)/bash|' \
-e's|\#\!/bin/sh|\#\! $(ibdir)/bash|' \
configure > configure-tmp
mv configure-tmp configure
chmod +x configure
- # Configure, build and install Coreutils.
+# Configure, build and install Coreutils.
./configure --prefix=$(idir) SHELL=$(ibdir)/bash \
LDFLAGS="$(LDFLAGS)" CPPFLAGS="$(CPPFLAGS)" \
--disable-silent-rules --with-openssl=yes
make SHELL=$(ibdir)/bash -j$(numthreads)
make SHELL=$(ibdir)/bash install
- # Fix RPATH if necessary.
+# Fix RPATH if necessary.
if [ -f $(ibdir)/patchelf ]; then
make SHELL=$(ibdir)/bash install DESTDIR=junkinst
unalias ls || true # avoid decorated 'ls' commands with extra characters
@@ -699,12 +700,34 @@ $(ibidir)/coreutils-$(coreutils-version): \
echo "PatchELF applied to all programs."
fi
- # Come back up to the unpacking directory, delete the source
- # directory and write the final target.
+# Come back up to the unpacking directory, delete the source
+# directory and write the final target.
cd ..
rm -rf coreutils-$(coreutils-version)
echo "GNU Coreutils $(coreutils-version)" > $@
+# Podlators
+#
+# POD is short for "Plain Old Documentation", that is the format used in
+# Perl's documentation. Podlators provies two executables pod2man and
+# pod2text convert this into the roff format (used in man pages) or pod2 It
+# is used by some software like OpenSSL to create their man pages.
+$(ibidir)/podlators-$(podlators-version): $(ibidir)/perl-$(perl-version)
+ tarball=podlators-$(podlators-version).tar.lz
+ $(call import-source, $(podlators-url), $(podlators-checksum))
+ cd $(ddir)
+ rm -rf podlators-$(podlators-version)
+ tar -xf $(tdir)/$$tarball
+ cd podlators-$(podlators-version)
+ perl Makefile.PL
+ make
+ make install
+ ln -sf $(ibdir)/site_perl/pod2man $(ibdir)/pod2man
+ ln -sf $(ibdir)/site_perl/pod2text $(ibdir)/pod2text
+ cd ..
+ rm -rf podlators-$(podlators-version)
+ echo "podlators $(podlators-version)" > $@
+
# OpenSSL
#
# Until we find a nice and generic way to create an updated CA file in the
@@ -712,26 +735,26 @@ $(ibidir)/coreutils-$(coreutils-version): \
# along with the other tarballs.
$(idir)/etc:; mkdir $@
$(idir)/etc/ssl: | $(idir)/etc; mkdir $@
-$(ibidir)/openssl-$(openssl-version): $(ibidir)/perl-$(perl-version) \
+$(ibidir)/openssl-$(openssl-version): $(ibidir)/podlators-$(podlators-version) \
| $(idir)/etc/ssl
- # First download the certificates and copy them into the
- # installation directory.
- tarball=cert.pem
+# First download the certificates and copy them into the
+# installation directory.
+ tarball=cert.pem-$(certpem-version)
$(call import-source, $(cert-url), $(cert-checksum))
- cp $(tdir)/cert.pem $(idir)/etc/ssl/cert.pem
+ cp $(tdir)/cert.pem-$(certpem-version) $(idir)/etc/ssl/cert.pem
- # Now download the OpenSSL tarball.
- tarball=openssl-$(openssl-version).tar.gz
+# Now download the OpenSSL tarball.
+ tarball=openssl-$(openssl-version).tar.lz
$(call import-source, $(openssl-url), $(openssl-checksum))
- # According to OpenSSL's Wiki (link bellow), it can't automatically
- # detect Mac OS's structure. It will need some help. So we'll use
- # the `on_mac_os' Make variable that we defined in the configure
- # script and help it with some extra configuration options and an
- # environment variable.
- #
- # https://wiki.openssl.org/index.php/Compilation_and_Installation
+# According to OpenSSL's Wiki (link bellow), it can't automatically
+# detect Mac OS's structure. It will need some help. So we'll use the
+# 'on_mac_os' Make variable that we defined in the configure script
+# and help it with some extra configuration options and an
+# environment variable.
+#
+# https://wiki.openssl.org/index.php/Compilation_and_Installation
if [ x$(on_mac_os) = xyes ]; then
export KERNEL_BITS=64
copt="shared no-ssl2 no-ssl3 enable-ec_nistp_64_gcc_128"
@@ -745,29 +768,19 @@ $(ibidir)/openssl-$(openssl-version): $(ibidir)/perl-$(perl-version) \
--with-zlib-include=$(idir)/include, \
-j$(numthreads), , ./config )
- # Manually insert RPATH inside the two created libraries.
+# Manually insert RPATH inside the two created libraries.
if [ -f $(ibdir)/patchelf ]; then
patchelf --set-rpath $(ildir) $(ildir)/libssl.so
patchelf --set-rpath $(ildir) $(ildir)/libcrypto.so
fi
- # Bug 58263 (https://savannah.nongnu.org/bugs/?58263): In OpenSSL
- # Version 1.1.1a (also checked in 1.1.1g), `openssl/ec.h' fails to
- # include `openssl/openconf.h' on some OSs. The SED hack below
- # inserts a hardwired element of `openssl/openconf.h' that is
- # needed to include sections of code `f` that are deprecated in
- # 1.2.0, but not yet in 1.1.1. This problem may be solved in
- # version 1.2.x, so please check again in that bug.
- mv -v $(idir)/include/openssl/ec.h $(idir)/include/openssl/ec.h.orig
- sed -e 's,\(# include .openssl/opensslconf\.h.\),\1\n#ifndef DEPRECATEDIN_1_2_0\n#define DEPRECATEDIN_1_2_0(f) f;\n#endif\n,' \
- $(idir)/include/openssl/ec.h.orig > $(idir)/include/openssl/ec.h
-
- # Build the final target.
+# Build the final target.
echo "OpenSSL $(openssl-version)" > $@
+
# Downloaders
# -----------
@@ -776,13 +789,13 @@ $(ibidir)/openssl-$(openssl-version): $(ibidir)/perl-$(perl-version) \
# cURL can optionally link with many different network-related libraries on
# the host system that we are not yet building in the template. Many of
# these are not relevant to most science projects, so we are explicitly
-# using `--without-XXX' or `--disable-XXX' so cURL doesn't link with
+# using '--without-XXX' or '--disable-XXX' so cURL doesn't link with
# them. Note that if it does link with them, the configuration will crash
# when the library is updated/changed by the host, and the whole purpose of
# this project is avoid dependency on the host as much as possible.
$(ibidir)/curl-$(curl-version): $(ibidir)/coreutils-$(coreutils-version)
- tarball=curl-$(curl-version).tar.gz
+ tarball=curl-$(curl-version).tar.lz
$(call import-source, $(curl-url), $(curl-checksum))
$(call gbuild, curl-$(curl-version), , \
@@ -812,8 +825,8 @@ $(ibidir)/curl-$(curl-version): $(ibidir)/coreutils-$(coreutils-version)
# GNU Wget
#
# Note that on some systems (for example GNU/Linux) Wget needs to explicity
-# link with `libdl', but on others (for example Mac OS) it doesn't. We
-# check this at configure time and define the `needs_ldl' variable.
+# link with 'libdl', but on others (for example Mac OS) it doesn't. We
+# check this at configure time and define the 'needs_ldl' variable.
#
# Also note that since Wget needs to load outside libraries dynamically, it
# gives a segmentation fault when built statically.
@@ -826,12 +839,12 @@ $(ibidir)/wget-$(wget-version): \
$(ibidir)/libiconv-$(libiconv-version) \
$(ibidir)/coreutils-$(coreutils-version)
- # Download the tarball.
+# Download the tarball.
tarball=wget-$(wget-version).tar.lz
$(call import-source, $(wget-url), $(wget-checksum))
- # We need to explicitly disable `libiconv', because of the
- # `pkg-config' and `libiconv' problem.
+# We need to explicitly disable 'libiconv', because of the
+# 'pkg-config' and 'libiconv' problem.
libs="-pthread"
if [ x$(needs_ldl) = xyes ]; then libs="$$libs -ldl"; fi
$(call gbuild, wget-$(wget-version), , \
@@ -864,13 +877,13 @@ $(ibidir)/wget-$(wget-version): \
# there is no access to the system's PATH.
$(ibidir)/diffutils-$(diffutils-version): \
$(ibidir)/coreutils-$(coreutils-version)
- tarball=diffutils-$(diffutils-version).tar.xz
+ tarball=diffutils-$(diffutils-version).tar.lz
$(call import-source, $(diffutils-url), $(diffutils-checksum))
$(call gbuild, diffutils-$(diffutils-version), static,,V=1)
echo "GNU Diffutils $(diffutils-version)" > $@
$(ibidir)/file-$(file-version): $(ibidir)/coreutils-$(coreutils-version)
- tarball=file-$(file-version).tar.gz
+ tarball=file-$(file-version).tar.lz
$(call import-source, $(file-url), $(file-checksum))
$(call gbuild, file-$(file-version), static, \
--disable-libseccomp, V=1)
@@ -878,7 +891,7 @@ $(ibidir)/file-$(file-version): $(ibidir)/coreutils-$(coreutils-version)
$(ibidir)/findutils-$(findutils-version): \
$(ibidir)/coreutils-$(coreutils-version)
- tarball=findutils-$(findutils-version).tar.xz
+ tarball=findutils-$(findutils-version).tar.lz
$(call import-source, $(findutils-url), $(findutils-checksum))
$(call gbuild, findutils-$(findutils-version), static,,V=1)
echo "GNU Findutils $(findutils-version)" > $@
@@ -888,19 +901,19 @@ $(ibidir)/gawk-$(gawk-version): \
$(ibidir)/mpfr-$(mpfr-version) \
$(ibidir)/coreutils-$(coreutils-version)
- # Download the tarball.
+# Download the tarball.
tarball=gawk-$(gawk-version).tar.lz
$(call import-source, $(gawk-url), $(gawk-checksum))
- # AWK doesn't include RPATH by default, so we'll have to manually
- # include it using the `patchelf' program (which was a dependency
- # of Bash). Just note that AWK produces two executables (for
- # example `gawk-4.2.1' and `gawk') and a symbolic link `awk' to one
- # of those executables.
+# AWK doesn't include RPATH by default, so we'll have to manually
+# include it using the 'patchelf' program (which was a dependency of
+# Bash). Just note that AWK produces two executables (for example
+# 'gawk-4.2.1' and 'gawk') and a symbolic link 'awk' to one of those
+# executables.
$(call gbuild, gawk-$(gawk-version), static, \
--with-readline=$(idir))
- # Correct the RPATH on systems that have installed patchelf.
+# Correct the RPATH on systems that have installed patchelf.
if [ -f $(ibdir)/patchelf ]; then
if [ -f $(ibdir)/gawk ]; then
$(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/gawk
@@ -911,31 +924,31 @@ $(ibidir)/gawk-$(gawk-version): \
fi
fi
- # Build final target.
+# Build final target.
echo "GNU AWK $(gawk-version)" > $@
$(ibidir)/libiconv-$(libiconv-version): \
$(ibidir)/pkg-config-$(pkgconfig-version)
- tarball=libiconv-$(libiconv-version).tar.gz
+ tarball=libiconv-$(libiconv-version).tar.lz
$(call import-source, $(libiconv-url), $(libiconv-checksum))
$(call gbuild, libiconv-$(libiconv-version), static)
echo "GNU libiconv $(libiconv-version)" > $@
$(ibidir)/libunistring-$(libunistring-version): \
$(ibidir)/libiconv-$(libiconv-version)
- tarball=libunistring-$(libunistring-version).tar.xz
+ tarball=libunistring-$(libunistring-version).tar.lz
$(call import-source, $(libunistring-url), $(libunistring-checksum))
$(call gbuild, libunistring-$(libunistring-version), static,, \
-j$(numthreads))
echo "GNU libunistring $(libunistring-version)" > $@
$(ibidir)/libxml2-$(libxml2-version): $(ibidir)/patchelf-$(patchelf-version)
- # The libxml2 tarball also contains Python bindings which are built
- # and installed to a system directory by default. If you don't need
- # the Python bindings, the easiest solution is to compile without
- # Python support: `./configure --without-python'. If you really need
- # the Python bindings, use `--with-python-install-dir=DIR' instead.
- tarball=libxml2-$(libxml2-version).tar.gz
+# The libxml2 tarball also contains Python bindings which are built
+# and installed to a system directory by default. If you don't need
+# the Python bindings, the easiest solution is to compile without
+# Python support: './configure --without-python'. If you really need
+# the Python bindings, use '--with-python-install-dir=DIR' instead.
+ tarball=libxml2-$(libxml2-version).tar.lz
$(call import-source, $(libxml2-url), $(libxml2-checksum))
$(call gbuild, libxml2-$(libxml2-version), static, \
--without-python, V=1)
@@ -958,7 +971,7 @@ $(ibidir)/git-$(git-version): \
$(ibidir)/curl-$(curl-version) \
$(ibidir)/gettext-$(gettext-version) \
$(ibidir)/libiconv-$(libiconv-version)
- tarball=git-$(git-version).tar.xz
+ tarball=git-$(git-version).tar.lz
if [ x$(on_mac_os) = xyes ]; then
export LDFLAGS="$$LDFLAGS -lcharset"
fi
@@ -982,7 +995,7 @@ $(ibidir)/gmp-$(gmp-version): \
# and generally to view large files easily when the project is built in a
# container with a minimal OS.
$(ibidir)/less-$(less-version): $(ibidir)/ncurses-$(ncurses-version)
- tarball=less-$(less-version).tar.gz
+ tarball=less-$(less-version).tar.lz
$(call import-source, $(less-url), $(less-checksum))
$(call gbuild, less-$(less-version), static,,-j$(numthreads))
if [ -f $(ibdir)/patchelf ]; then
@@ -991,9 +1004,9 @@ $(ibidir)/less-$(less-version): $(ibidir)/ncurses-$(ncurses-version)
echo "Less $(less-version)" > $@
# On Mac OS, libtool does different things, so to avoid confusion, we'll
-# prefix GNU's libtool executables with `glibtool'.
+# prefix GNU's libtool executables with 'glibtool'.
$(ibidir)/libtool-$(libtool-version): $(ibidir)/m4-$(m4-version)
- tarball=libtool-$(libtool-version).tar.xz
+ tarball=libtool-$(libtool-version).tar.lz
$(call import-source, $(libtool-url), $(libtool-checksum))
$(call gbuild, libtool-$(libtool-version), static, \
--program-prefix=g, V=1 -j$(numthreads))
@@ -1001,162 +1014,44 @@ $(ibidir)/libtool-$(libtool-version): $(ibidir)/m4-$(m4-version)
echo "GNU Libtool $(libtool-version)" > $@
$(ibidir)/grep-$(grep-version): $(ibidir)/coreutils-$(coreutils-version)
- tarball=grep-$(grep-version).tar.xz
+ tarball=grep-$(grep-version).tar.lz
$(call import-source, $(grep-url), $(grep-checksum))
$(call gbuild, grep-$(grep-version), static,,V=1)
echo "GNU Grep $(grep-version)" > $@
-$(ibidir)/libbsd-$(libbsd-version): $(ibidir)/coreutils-$(coreutils-version)
- tarball=libbsd-$(libbsd-version).tar.xz
- $(call import-source, $(libbsd-url), $(libbsd-checksum))
- if [ x$(on_mac_os) = xyes ]; then
- echo "" > $@
- else
- $(call gbuild, libbsd-$(libbsd-version), static,,V=1)
- echo "Libbsd $(libbsd-version)" > $@
- fi
-
-# We need to apply a patch to the M4 source to be used properly on macOS.
-# The patch [1] was inspired by Homebrew's build instructions [1].
-#
-# [1] https://raw.githubusercontent.com/macports/macports-ports/edf0ee1e2cf/devel/m4/files/secure_snprintf.patch
-# [2] https://github.com/Homebrew/homebrew-core/blob/master/Formula/m4.rb
-#
# M4 doesn't depend on PatchELF, but just to be consistent with the
# levels/phases introduced here (where the compressors are level 1,
# PatchELF is level 2, and ...), we'll set it as a dependency.
$(ibidir)/m4-$(m4-version): $(ibidir)/patchelf-$(patchelf-version)
- tarball=m4-$(m4-version).tar.gz
+ tarball=m4-$(m4-version).tar.lz
$(call import-source, $(m4-url), $(m4-checksum))
- cd $(ddir)
- unpackdir=m4-$(m4-version)
- rm -rf $$unpackdir
- tar xf $(tdir)/$$tarball
- mv m4-* $$unpackdir
- cd $$unpackdir
- if [ x$(on_mac_os) = xyes ]; then
- sed 's|if !(((__GLIBC__ > 2|if !defined(__APPLE__) \&\& !(((__GLIBC__ > 2|' \
- lib/vasnprintf.c > lib/vasnprintf_edited.c
- mv lib/vasnprintf_edited.c lib/vasnprintf.c
- fi
- ./configure --prefix=$(idir) LDFLAGS="$(LDFLAGS)" \
- CPPFLAGS="$(CPPFLAGS)"
- make V=1 -j$(numthreads)
- make V=1 install
- cd ..
- rm -rf $$unpackdir
+ $(call gbuild, m4-$(m4-version), static,,V=1)
echo "GNU M4 $(m4-version)" > $@
-# Metastore is used (through a Git hook) to restore the source modification
-# dates of files after a Git checkout. Another Git hook saves all file
-# metadata just before a commit (to allow restoration after a
-# checkout). Since this project is managed in Makefiles, file modification
-# dates are critical to not having to redo the whole analysis after
-# checking out between branches.
-#
-# Note that we aren't using the standard version of Metastore, but a fork
-# of it that is maintained in this repository:
-# https://gitlab.com/makhlaghi/metastore-fork
-#
-# Note that the prerequisites `coreutils', `gawk' and `sed' are not
-# metastore oficial dependencies, but they are necessaries to run our steps
-# before and after the installation.
-#
-# Libbsd is not necessary on macOS systems, because macOS is already a
-# BSD-based distribution. But on GNU/Linux systems, it is necessary.
-$(ibidir)/metastore-$(metastore-version): \
- $(ibidir)/sed-$(sed-version) \
- $(ibidir)/git-$(git-version) \
- $(ibidir)/gawk-$(gawk-version) \
- $(ibidir)/libbsd-$(libbsd-version) \
- $(ibidir)/coreutils-$(coreutils-version)
-
- # Download the tarball.
- tarball=metastore-$(metastore-version).tar.gz
- $(call import-source, $(metastore-url), $(metastore-checksum))
-
- # Metastore doesn't have any `./configure' script. So we'll just
- # call `pwd' as a place-holder for the `./configure' command.
- #
- # File attributes are also not available on some systems, since the
- # main purpose here is modification dates (and not attributes),
- # we'll also set the `NO_XATTR' flag.
- #
- # After installing Metastore, write the relevant hooks into this
- # system's Git hooks, while setting the system-specific
- # directories/files.
- #
- # Note that the metastore -O and -G options used in this template
- # are currently only available in a fork of `metastore' hosted at:
- # https://github.com/mohammad-akhlaghi/metastore
- #
- # Checking for presence of `.git'. When the project source is
- # downloaded from a non-Git source (for example from arXiv), there
- # is no `.git' directory to work with. So until we find a better
- # solution, avoid the step to to add the Git hooks.
- current_dir=$$(pwd); \
- $(call gbuild, metastore-$(metastore-version), static,, \
- NO_XATTR=1 V=1,,pwd,PREFIX=$(idir))
-
- # Correct RPATH when necessary.
- if [ -f $(ibdir)/patchelf ]; then
- $(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/metastore
- fi
-
- # If this project is being built in a directory version controlled
- # by Git, copy the hooks into the Git configuation.
- if [ -f $(ibdir)/metastore ]; then
- if [ -d .git ]; then
- user=$$(whoami)
- group=$$(groups | awk '{print $$1}')
- cd $$current_dir
- for f in pre-commit post-checkout; do
- sed -e's|@USER[@]|'$$user'|g' \
- -e's|@GROUP[@]|'$$group'|g' \
- -e's|@BINDIR[@]|$(ibdir)|g' \
- -e's|@TOP_PROJECT_DIR[@]|'$$current_dir'|g' \
- reproduce/software/shell/git-$$f > .git/hooks/$$f
- chmod +x .git/hooks/$$f
- done
- fi
- echo "Metastore (forked) $(metastore-version)" > $@
- else
- echo; echo; echo
- echo "*****************"
- echo "metastore couldn't be installed!"
- echo
- echo "Its used for preserving timestamps on Git commits."
- echo "Its useful for development, not simple running of "
- echo "the project. So we won't stop the configuration "
- echo "because it wasn't built."
- echo "*****************"
- echo "" > $@
- fi
-
$(ibidir)/mpfr-$(mpfr-version): $(ibidir)/gmp-$(gmp-version)
- tarball=mpfr-$(mpfr-version).tar.xz
+ tarball=mpfr-$(mpfr-version).tar.lz
$(call import-source, $(mpfr-url), $(mpfr-checksum))
$(call gbuild, mpfr-$(mpfr-version), static, , , make check)
echo "GNU Multiple Precision Floating-Point Reliably $(mpfr-version)" > $@
$(ibidir)/pkg-config-$(pkgconfig-version): $(ibidir)/patchelf-$(patchelf-version)
- # Download the tarball.
- tarball=pkg-config-$(pkgconfig-version).tar.gz
+# Download the tarball.
+ tarball=pkg-config-$(pkgconfig-version).tar.lz
$(call import-source, $(pkgconfig-url), $(pkgconfig-checksum))
- # An existing `libiconv' can cause a conflict with `pkg-config',
- # this is why `libiconv' depends on `pkg-config'. On a clean build,
- # `pkg-config' is built first. But when we don't have a clean build
- # (and `libiconv' exists) there will be a problem. So before
- # re-building `pkg-config', we'll remove any installation of
- # `libiconv'.
+# An existing 'libiconv' can cause a conflict with 'pkg-config', this
+# is why 'libiconv' depends on 'pkg-config'. On a clean build,
+# 'pkg-config' is built first. But when we don't have a clean build
+# (and 'libiconv' exists) there will be a problem. So before
+# re-building 'pkg-config', we'll remove any installation of
+# 'libiconv'.
rm -f $(ildir)/libiconv* $(idir)/include/iconv.h
- # Some Mac OS systems may have a version of the GNU C Compiler
- # (GCC) installed that doesn't support some necessary features of
- # building Glib (as part of pkg-config). So to be safe, for Mac
- # systems, we'll make sure it will use LLVM's Clang.
+# Some Mac OS systems may have a version of the GNU C Compiler (GCC)
+# installed that doesn't support some necessary features of building
+# Glib (as part of pkg-config). So to be safe, for Mac systems, we'll
+# make sure it will use LLVM's Clang.
if [ x$(on_mac_os) = xyes ]; then export compiler="CC=clang"
else export compiler=""
fi
@@ -1166,7 +1061,7 @@ $(ibidir)/pkg-config-$(pkgconfig-version): $(ibidir)/patchelf-$(patchelf-version
echo "pkg-config $(pkgconfig-version)" > $@
$(ibidir)/sed-$(sed-version): $(ibidir)/coreutils-$(coreutils-version)
- tarball=sed-$(sed-version).tar.xz
+ tarball=sed-$(sed-version).tar.lz
$(call import-source, $(sed-url), $(sed-checksum))
$(call gbuild, sed-$(sed-version), static,,V=1)
echo "GNU Sed $(sed-version)" > $@
@@ -1174,7 +1069,7 @@ $(ibidir)/sed-$(sed-version): $(ibidir)/coreutils-$(coreutils-version)
$(ibidir)/texinfo-$(texinfo-version): \
$(ibidir)/perl-$(perl-version) \
$(ibidir)/gettext-$(gettext-version)
- tarball=texinfo-$(texinfo-version).tar.xz
+ tarball=texinfo-$(texinfo-version).tar.lz
$(call import-source, $(texinfo-url), $(texinfo-checksum))
$(call gbuild, texinfo-$(texinfo-version), static)
if [ -f $(ibdir)/patchelf ]; then
@@ -1184,14 +1079,14 @@ $(ibidir)/texinfo-$(texinfo-version): \
echo "GNU Texinfo $(texinfo-version)" > $@
$(ibidir)/which-$(which-version): $(ibidir)/coreutils-$(coreutils-version)
- tarball=which-$(which-version).tar.gz
+ tarball=which-$(which-version).tar.lz
$(call import-source, $(which-url), $(which-checksum))
$(call gbuild, which-$(which-version), static)
echo "GNU Which $(which-version)" > $@
# GNU ISL is necessary to build GCC.
$(ibidir)/isl-$(isl-version): $(ibidir)/gmp-$(gmp-version)
- tarball=isl-$(isl-version).tar.bz2
+ tarball=isl-$(isl-version).tar.lz
$(call import-source, $(isl-url), $(isl-checksum))
if [ $(host_cc) = 1 ]; then
echo "" > $@
@@ -1203,7 +1098,7 @@ $(ibidir)/isl-$(isl-version): $(ibidir)/gmp-$(gmp-version)
# GNU MPC is necessary to build GCC.
$(ibidir)/mpc-$(mpc-version): $(ibidir)/mpfr-$(mpfr-version)
- tarball=mpc-$(mpc-version).tar.gz
+ tarball=mpc-$(mpc-version).tar.lz
$(call import-source, $(mpc-url), $(mpc-checksum))
if [ $(host_cc) = 1 ]; then
echo "" > $@
@@ -1226,33 +1121,34 @@ $(ibidir)/mpc-$(mpc-version): $(ibidir)/mpfr-$(mpfr-version)
# -----------------------
#
# The installation of Binutils can cause problems during the build of other
-# programs (http://savannah.nongnu.org/bugs/?56294), but its necessary for
+# programs since it provides the linker that is used to build them
+# (http://savannah.nongnu.org/bugs/?56294). However, it is necessary for
# GCC. Therefore, we'll set all other basic programs as Binutils
-# prerequisite and GCC (the final basic target) ultimately just depends on
-# Binutils.
+# prerequisites, so GCC (the almost-final basic target) ultimately just
+# depends on Binutils.
$(ibidir)/binutils-$(binutils-version): \
- $(ibidir)/sed-$(sed-version) \
+ $(ibidir)/git-$(git-version) \
$(ibidir)/isl-$(isl-version) \
$(ibidir)/mpc-$(mpc-version) \
- $(ibidir)/wget-$(wget-version) \
- $(ibidir)/grep-$(grep-version) \
+ $(ibidir)/sed-$(sed-version) \
$(ibidir)/file-$(file-version) \
$(ibidir)/gawk-$(gawk-version) \
+ $(ibidir)/grep-$(grep-version) \
+ $(ibidir)/wget-$(wget-version) \
$(ibidir)/which-$(which-version) \
- $(ibidir)/texinfo-$(texinfo-version) \
$(ibidir)/libtool-$(libtool-version) \
- $(ibidir)/metastore-$(metastore-version) \
- $(ibidir)/findutils-$(findutils-version) \
+ $(ibidir)/texinfo-$(texinfo-version) \
+ $(ibidir)/coreutils-$(coreutils-version) \
$(ibidir)/diffutils-$(diffutils-version) \
- $(ibidir)/coreutils-$(coreutils-version)
+ $(ibidir)/findutils-$(findutils-version)
- # Download the tarball.
+# Download the tarball.
tarball=binutils-$(binutils-version).tar.lz
$(call import-source, $(binutils-url), $(binutils-checksum))
- # Binutils' assembler (`as') and linker (`ld') will conflict with
- # other compilers. So if we don't build our own compiler, we'll use
- # the host opertating system's equivalents by just making links.
+# Binutils' assembler ('as') and linker ('ld') will conflict with
+# other compilers. So if we don't build our own compiler, we'll use
+# the host opertating system's equivalents by just making links.
if [ x$(on_mac_os) = xyes ]; then
$(call makelink,as)
$(call makelink,ar)
@@ -1264,20 +1160,20 @@ $(ibidir)/binutils-$(binutils-version): \
echo "" > $@
else
- # Build binutils with the standard 'gbuild' function.
+# Build binutils with the standard 'gbuild' function.
$(call gbuild, binutils-$(binutils-version), static, \
--with-lib-path=$(sys_library_path), \
-j$(numthreads) )
- # The `ld' linker of Binutils needs several `*crt*.o' files from
- # the host's GNU C Library to run. On some systems these object
- # files aren't installed in standard places. We defined
- # `LIBRARY_PATH' and that fixed the problem for many
- # systems. However, some software (for example ImageMagick)
- # over-write `LIBRARY_PATH', therefore there is no other way than
- # to put a link to these necessary files in our local build
- # directory. IMPORTANT NOTE: later, when we build the GNU C
- # Library in the project, we should remove this step.
+# The 'ld' linker of Binutils needs several '*crt*.o' files from
+# the host's GNU C Library to run. On some systems these object
+# files aren't installed in standard places. We defined
+# 'LIBRARY_PATH' and that fixed the problem for many
+# systems. However, some software (for example ImageMagick)
+# over-write 'LIBRARY_PATH', therefore there is no other way than
+# to put a link to these necessary files in our local build
+# directory. IMPORTANT NOTE: later, when we build the GNU C Library
+# in the project, we should remove this step.
if ! [ x"$(sys_library_path)" = x ]; then
for f in $(sys_library_path)/*crt*.o; do
b=$$($(ibdir)/basename $$f)
@@ -1285,11 +1181,11 @@ $(ibidir)/binutils-$(binutils-version): \
done
fi
- # Write the final target.
+# Write the final target.
echo "GNU Binutils $(binutils-version)" > $@
fi
-# We are having issues with `libiberty' (part of GCC) on Mac. So for now,
+# We are having issues with 'libiberty' (part of GCC) on Mac. So for now,
# GCC won't be built there. Since almost no natural science paper's
# processing depends so strongly on the compiler used, for now, this isn't
# a bad assumption, but we are indeed searching for a solution.
@@ -1298,7 +1194,7 @@ $(ibidir)/binutils-$(binutils-version): \
# environment. So, we'll build GCC after building all the basic tools that
# are often used in a configure and build scripts of GCC components.
#
-# Objective C and Objective C++ is necessary for installing `matplotlib'.
+# Objective C and Objective C++ is necessary for installing 'matplotlib'.
#
# We are currently having problems installing GCC on macOS, so for the time
# being, if the project is being run on a macOS, we'll just set a link.
@@ -1325,45 +1221,41 @@ $(ibidir)/gcc-$(gcc-version): $(ibidir)/binutils-$(binutils-version)
echo; exit 1
}
- # Download the tarball.
- tarball=gcc-$(gcc-version).tar.xz
+# Download the tarball.
+ tarball=gcc-$(gcc-version).tar.lz
$(call import-source, $(gcc-url), $(gcc-checksum))
- # To avoid any previous build in '.local/bin' causing problems in
- # this build/links of this GCC, we'll first delete all the possibly
- # built/existing compilers in this project. Note that GCC also
- # installs several executables like this 'x86_64-pc-linux-gnu-gcc',
- # 'x86_64-pc-linux-gnu-gcc-ar' or 'x86_64-pc-linux-gnu-g++'.
+# To avoid any previous build in '.local/bin' causing problems in
+# this build/links of this GCC, we'll first delete all the possibly
+# built/existing compilers in this project. Note that GCC also
+# installs several executables like this 'x86_64-pc-linux-gnu-gcc',
+# 'x86_64-pc-linux-gnu-gcc-ar' or 'x86_64-pc-linux-gnu-g++'.
rm -f $(ibdir)/*g++ $(ibdir)/cpp $(ibdir)/gfortran
rm -rf $(ildir)/gcc $(ildir)/libcc* $(ildir)/libgcc*
rm -f $(ibdir)/*gcc* $(ibdir)/gcov* $(ibdir)/cc $(ibdir)/c++
rm -rf $(ildir)/libgfortran* $(ildir)/libstdc* rm $(idir)/x86_64*
- # GCC builds is own libraries in '$(idir)/lib64'. But all other
- # libraries are in '$(idir)/lib'. Since this project is only for a
- # single architecture, we can trick GCC into building its libraries
- # in '$(idir)/lib' by defining the '$(idir)/lib64' as a symbolic
- # link to '$(idir)/lib'.
+# Build (or set links) to GCC.
if [ $(host_cc) = 1 ]; then
- # Put links to the host's tools in '.local/bin'. Note that some
- # macOS systems have both a native clang *and* a GNU C Compiler
- # (note that this is different from the "normal" macOS situation
- # where 'gcc' actually points to clang, here we mean when 'gcc'
- # is actually the GNU C Compiler).
- #
- # In such cases, the GCC isn't complete and using it will cause
- # problems when building high-level tools (for example openBLAS,
- # rpcsvc-proto, CMake, xlsxio, Python or Matplotlib among
- # others). To avoid such situations macOSs are configured like
- # this: we'll simply set 'gcc' to point to 'clang' and won't set
- # 'gcc' to point to the system's 'gcc'.
- #
- # Also, note that LLVM's clang doesn't have a C Pre-Processor. So
- # we will only put a link to the host's 'cpp' if the system is
- # not macOS. On macOS systems that have a real GCC installed,
- # having GNU CPP in the project build directory is known to cause
- # problems with 'libX11'.
+# Put links to the host's tools in '.local/bin'. Note that some
+# macOS systems have both a native clang *and* a GNU C Compiler
+# (note that this is different from the "normal" macOS situation
+# where 'gcc' actually points to clang, here we mean when 'gcc' is
+# actually the GNU C Compiler).
+#
+# In such cases, the GCC isn't complete and using it will cause
+# problems when building high-level tools (for example openBLAS,
+# rpcsvc-proto, CMake, xlsxio, Python or Matplotlib among
+# others). To avoid such situations macOSs are configured like
+# this: we'll simply set 'gcc' to point to 'clang' and won't set
+# 'gcc' to point to the system's 'gcc'.
+#
+# Also, note that LLVM's clang doesn't have a C Pre-Processor. So
+# we will only put a link to the host's 'cpp' if the system is not
+# macOS. On macOS systems that have a real GCC installed, having
+# GNU CPP in the project build directory is known to cause problems
+# with 'libX11'.
$(call makelink,gfortran)
if [ x$(on_mac_os) = xyes ]; then
$(call makelink,clang)
@@ -1376,59 +1268,61 @@ $(ibidir)/gcc-$(gcc-version): $(ibidir)/binutils-$(binutils-version)
$(call makelink,g++)
fi
- # We also want to have the two 'cc' and 'c++' in the build
- # directory that point to the selected compiler. With the checks
- # above, 'gcc' and 'g++' will point to the proper compiler, so
- # we'll use them to define 'cc' and 'c++'.
+# We also want to have the two 'cc' and 'c++' in the build
+# directory that point to the selected compiler. With the checks
+# above, 'gcc' and 'g++' will point to the proper compiler, so
+# we'll use them to define 'cc' and 'c++'.
$(call makelink,gcc,,cc)
$(call makelink,g++,,c++)
- # Get the first line of the compiler's '--version' output and put
- # that into the target (so we know want compiler was used).
+# Get the first line of the compiler's '--version' output and put
+# that into the target (so we know want compiler was used).
ccinfo=$$(gcc --version | awk 'NR==1')
echo "C compiler (""$$ccinfo"")" > $@
else
- # Mark the current directory.
+# Mark the current directory.
current_dir=$$(pwd)
- # We don't want '.local/lib' and '.local/lib64' to be separate.
- ln -fs $(ildir) $(idir)/lib64
-
- # By default we'll build GCC in the RAM to avoid building so many
- # files and possibly harming the hard-drive or SSD. But if the
- # RAM doesn't have enough space, we can't use it.
+# By default 'ddir' (where GCC is decompressed and built) is in the
+# RAM (on systems that support '/dev/shm'). This is done to avoid
+# building so many small/temporary files and possibly harming the
+# hard-drive or SSD. But if the RAM doesn't have enough space, we
+# should use the hard-drive or SSD. During its build GCC's build
+# directory will become about 7GB (multiple of 1024 bytes, for GCC
+# 11.2.0). So at this step, we are making sure we have more than
+# 7.5GiB (multiple of 1000 bytes, which corresponds to 7.32GB)
+# before GCC starts to build. Note that the 4th column of 'df' is
+# the "available" space at the time of running, not the full
+# space. So the background RAM that the OS will be using during
+# Maneage is accounted for. Also consider that GCC is built alone
+# (no other Maneage software is built at the same time as GCC).
in_ram=$$(df $(ddir) \
- | awk 'NR==2{print ($$4>10000000) ? "yes" : "no"}'); \
+ | awk 'NR==2{print ($$4>7500000) ? "yes" : "no"}'); \
if [ $$in_ram = "yes" ]; then odir=$(ddir)
else
- odir=$(BDIR)/software/build-tmp-gcc
+ odir=$(BDIR)/software/build-tmp-gcc-due-to-lack-of-space
if [ -d $$odir ]; then rm -rf $$odir; fi
mkdir $$odir
fi
- # Go into the proper directory, unpack GCC and prepare the
- # 'build' directory inside it for all the built files.
+# Go into the proper directory, unpack GCC and prepare the 'build'
+# directory inside it for all the built files.
cd $$odir
rm -rf gcc-$(gcc-version)
- tar xf $(tdir)/$$tarball
+ tar -xf $(tdir)/$$tarball
if [ $$odir != $(ddir) ]; then
ln -s $$odir/gcc-$(gcc-version) $(ddir)/gcc-$(gcc-version)
fi
cd gcc-$(gcc-version)
- # Handle bug https://savannah.nongnu.org/bugs/index.php?61240 in
- # which gcc preferentially uses a system-level 'unwind' library
- # rather than using its own one.
- ln -sf ../../libgcc/unwind-generic.h libstdc++-v3/libsupc++/unwind.h
- ln -sf ../libgcc/unwind-generic.h libitm/unwind.h
-
+# Set the build directory for the processing.
mkdir build
cd build
- # Configure, build and install GCC, if any of three steps fails,
- # the error message will be printed.
+# Configure, build and install GCC, if any of three steps fails,
+# the error message will be printed.
if ! ../configure SHELL=$(ibdir)/bash \
--prefix=$(idir) \
--with-mpc=$(idir) \
@@ -1447,26 +1341,25 @@ $(ibidir)/gcc-$(gcc-version): $(ibidir)/binutils-$(binutils-version)
--enable-languages=c,c++,fortran,objc,obj-c++ \
--disable-nls \
--disable-libada \
- --disable-multilib \
- --disable-multiarch; then error_message; fi
+ --disable-multilib; then error_message; fi
if ! make SHELL=$(ibdir)/bash -j$(numthreads); then error_message; fi
if ! make SHELL=$(ibdir)/bash install; then error_message; fi
- # We need to manually fix the RPATH inside GCC's libraries, the
- # programs built by GCC already have RPATH.
+# We need to manually fix the RPATH inside GCC's libraries, the
+# programs built by GCC already have RPATH.
tempname=$$odir/gcc-$(gcc-version)/build/rpath-temp-copy
if [ -f $(ibdir)/patchelf ]; then
- # Go over all the installed GCC libraries (its executables are
- # fine!).
+# Go over all the installed GCC libraries (its executables are
+# fine!).
for f in $$(find $(idir)/libexec/gcc -type f) $(ildir)/libstdc++*; do
- # Make sure this is a static library, copy it to a temporary
- # name (to avoid any possible usage of the file while it is
- # being corrected), and add RPATH inside of it and put the
- # corrected file back in its place. In the case of the
- # standard C++ library, we also need to manually insert a
- # linking to libiconv.
+# Make sure this is a static library, copy it to a temporary
+# name (to avoid any possible usage of the file while it is
+# being corrected), and add RPATH inside of it and put the
+# corrected file back in its place. In the case of the standard
+# C++ library, we also need to manually insert a linking to
+# libiconv.
if file $$f | grep -q "dynamically linked"; then
cp $$f $$tempname
patchelf --set-rpath $(ildir) $$tempname
@@ -1480,8 +1373,8 @@ $(ibidir)/gcc-$(gcc-version): $(ibidir)/binutils-$(binutils-version)
done
fi
- # Come back up to the un-packing directory and delete the GCC
- # source directory.
+# Come back up to the un-packing directory and delete the GCC
+# source directory.
cd ../..
rm -rf gcc-$(gcc-version)
cd $$current_dir
@@ -1490,11 +1383,11 @@ $(ibidir)/gcc-$(gcc-version): $(ibidir)/binutils-$(binutils-version)
rm $(ddir)/gcc-$(gcc-version);
fi
- # Set 'cc' to point to 'gcc'.
+# Set 'cc' to point to 'gcc'.
ln -sf $(ibdir)/gcc $(ibdir)/cc
ln -sf $(ibdir)/g++ $(ibdir)/c++
- # Write the final target.
+# Write the final target.
echo "GNU Compiler Collection (GCC) $(gcc-version)" > $@
fi
@@ -1513,18 +1406,19 @@ $(ibidir)/gcc-$(gcc-version): $(ibidir)/binutils-$(binutils-version)
# If the project is built in a minimal environment, there is no text
# editor, making it hard to work on the project. By default a minimal
# (relatively user-friendly: GNU Nano) text editor will thus also be built
-# at the end of the "basic" tools. More advanced editors are available as
-# optional high-level programs. GNU Nano is a very light-weight and small
-# command-line text editor (around 3.5 Mb after installation!).
+# at the end of the "basic" tools. More advanced editors (for example Emacs
+# and Vim) are available as optional high-level programs. GNU Nano is a
+# very light-weight and small command-line text editor (around 3.5 Mb after
+# installation!).
#
# The editor is a top-level target in the basic tools (given to
# 'targets-proglib' above). Hence nothing depends on it, and it just
# depends on GCC. This is done because some projects may choose to not have
-# nano (and use their own optional high-level text editor). To do this,
-# they just have to manually remove 'nano' from 'targets-proglib' above and
+# nano (and use their own optional high-level text editor). To do this, you
+# can just have to manually remove 'nano' from 'targets-proglib' above and
# add their optional text editor in 'TARGETS.conf'.
$(ibidir)/nano-$(nano-version): $(ibidir)/gcc-$(gcc-version)
- tarball=nano-$(nano-version).tar.xz
+ tarball=nano-$(nano-version).tar.lz
$(call import-source, $(nano-url), $(nano-checksum))
$(call gbuild, nano-$(nano-version), static)
echo "GNU Nano $(nano-version)" > $@
diff --git a/reproduce/software/make/build-rules.mk b/reproduce/software/make/build-rules.mk
index 66c77bc..c25dfb1 100644
--- a/reproduce/software/make/build-rules.mk
+++ b/reproduce/software/make/build-rules.mk
@@ -3,7 +3,7 @@
# imported into 'basic.mk' and 'high-level.mk'. They should be activated
# with Make's 'Call' function.
#
-# Copyright (C) 2018-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+# Copyright (C) 2018-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org>
#
# This Makefile is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
@@ -29,8 +29,13 @@
# its checksum and if it is correct, remove the extra suffix.
#
# Arguments:
-# 1: The optional URL to use for this tarball.
-# 2: The expeced checksum of the tarball.
+# 1: The optional base URL (directory) to use for this tarball.
+# 2: The expected checksum of the tarball.
+# 3: The upstream name of the tarball file, if not automatically derived
+# from the version number.
+# 4: [Optional]: Alternative upstream base URL (directory) for the
+# tarball, to be used in preference to user or Maneage backup
+# servers.
#
# Necessary shell variables
# 'tarball': This is the name of the actual tarball file without a
@@ -56,7 +61,14 @@ import-source = final=$(tdir)/$$tarball; \
tarballurl=$(topbackupserver)/$$tarball; \
else \
bservers="$(backupservers_all)"; \
- tarballurl=$$url/$$tarball; \
+ if [ "x$(strip $(3))" = "x" ]; then \
+ tarballurl=$$url/$$tarball; \
+ else \
+ tarballurl=$$url/$(strip $(3)); \
+ fi; \
+ fi; \
+ if [ x"$(4)" != x ]; then \
+ bservers="$(strip $(4)) $$bservers"; \
fi; \
if [ -f $(ibdir)/wget ]; then \
downloader="wget --no-use-server-timestamps -O"; \
@@ -89,6 +101,48 @@ import-source = final=$(tdir)/$$tarball; \
+# Double-check an already downloaded R source
+# -------------------------------------------
+#
+# It is probably too late to protect the system if you have already
+# installed an insecure or wrong R package. However, it's still useful
+# to check that the source package is the one that you think it is.
+#
+# Calculate the checksum and exit with a non-zero error code if
+# there's a mismatch, after informing the user.
+#
+# Arguments:
+# 1: The expected checksum of the tarball.
+#
+# Necessary shell variables
+# 'tarball': This is the name of the actual tarball file without a
+# directory.
+double-check-R-source = final=$(tdir)/R-project/$$tarball; \
+ exp_checksum="$(strip $(1))"; \
+ if [ x"$$exp_checksum" = x"NO-CHECK-SUM" ]; then \
+ result=0; \
+ else \
+ if type sha512sum > /dev/null 2>/dev/null; then \
+ checksum=$$(sha512sum "$$final" | awk '{print $$1}'); \
+ if [ x"$$checksum" = x"$$exp_checksum" ]; then \
+ result=0; \
+ else \
+ echo "ERROR: Non-matching checksum: $$final"; \
+ echo "Checksum should be: $$exp_checksum"; \
+ echo "Checksum is: $$checksum"; \
+ result=1; \
+ exit 1; \
+ fi; \
+ else \
+ echo "ERROR: sha512sum is unavailable."; \
+ exit 1; \
+ fi; \
+ fi
+
+
+
+
+
# Unpack a tarball
# ----------------
#
@@ -106,7 +160,7 @@ uncompress = csuffix=$$(echo $$utarball \
intarrm=0; \
intar=$$utarball; \
fi; \
- if tar xf $$intar; then \
+ if tar -xf $$intar; then \
if [ x$$intarrm = x1 ]; then rm $$intar; fi; \
else \
echo; echo "Tar error"; exit 1; \
@@ -166,10 +220,13 @@ gbuild = if [ x$(static_build) = xyes ] && [ "x$(2)" = xstatic ]; then \
else shellop="SHELL=/bin/sh"; \
fi; \
\
+ if [ x$$gbuild_prefix = x ]; then prefixdir="$(idir)"; \
+ else prefixdir="$$gbuild_prefix"; fi; \
+ \
if [ -f "$$confscript" ]; then \
if [ x"$(strip $(1))" = x"zlib-$(zlib-version)" ]; then \
- configop="--prefix=$(idir)"; \
- else configop="$$shellop --prefix=$(idir)"; \
+ configop="--prefix=$$prefixdir"; \
+ else configop="$$shellop --prefix=$$prefixdir"; \
fi; \
fi; \
\
@@ -190,7 +247,7 @@ gbuild = if [ x$(static_build) = xyes ] && [ "x$(2)" = xstatic ]; then \
make "$$shellop" install $(7); \
cd ..; \
fi; \
- rm -rf $(1)
+ rm -rf $(1);
diff --git a/reproduce/software/make/high-level.mk b/reproduce/software/make/high-level.mk
index 6ea782c..34c829b 100644
--- a/reproduce/software/make/high-level.mk
+++ b/reproduce/software/make/high-level.mk
@@ -3,7 +3,7 @@
# ------------------------------------------------------------------------
# !!!!! IMPORTANT NOTES !!!!!
#
-# This Makefile will be run by the initial `./project configure' script. It
+# This Makefile will be run by the initial './project configure' script. It
# is not included into the project afterwards.
#
# This Makefile builds the high-level (optional) software in Maneage that
@@ -12,8 +12,8 @@
#
# ------------------------------------------------------------------------
#
-# Copyright (C) 2018-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org>
-# Copyright (C) 2019-2021 Raul Infante-Sainz <infantesainz@gmail.com>
+# Copyright (C) 2018-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+# Copyright (C) 2019-2022 Raul Infante-Sainz <infantesainz@gmail.com>
#
# This Makefile is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
@@ -60,6 +60,9 @@ patchdir = "$(shell pwd)"/reproduce/software/patches
itidir = $(BDIR)/software/installed/version-info/tex
ictdir = $(BDIR)/software/installed/version-info/cite
ipydir = $(BDIR)/software/installed/version-info/python
+ircrandir = $(BDIR)/software/installed/version-info/r-cran
+ilibrcrandir = $(BDIR)/software/installed/lib/R/library
+
# Targets to build.
ifeq ($(strip $(all_highlevel)),1)
@@ -75,7 +78,7 @@ ifeq ($(strip $(all_highlevel)),1)
# included here because there is no explicit target for them: they will
# be built as part of the other package.
targets-proglib := $(filter-out minizip-% lapack-% ghostscript-fonts-%, \
- $(shell awk '/^# CLASS:PYTHON/{good=0} \
+ $(shell awk '/^# CLASS:(PYTHON|R-CRAN)/{good=0} \
good==1 && !/^#/ && $$1 ~ /-version$$/ { \
printf("%s %s ", $$1, $$3)} \
/^# CLASS:HIGHLEVEL/{good=1}' \
@@ -85,14 +88,25 @@ ifeq ($(strip $(all_highlevel)),1)
# List all existing Python packages.
targets-python := $(shell \
- awk '/^# CLASS:PYTHON/{good=1} \
- good==1 && !/^#/ && $$1 ~ /-version$$/ {printf("%s %s ",$$1,$$3)}' \
- reproduce/software/config/versions.conf | sed 's/version //g')
+ awk '/^# CLASS:PYTHON-START/{good=1} good; \
+ /^# CLASS:PYTHON-END/{good=0}' \
+ reproduce/software/config/versions.conf \
+ | awk '!/^#/' \
+ | sed 's/-version = /-/g')
+
+ # List all existing R-CRAN packages.
+ targets-r-cran := $(shell \
+ awk '/^# CLASS:R-CRAN-START/{good=1} good; \
+ /^# CLASS:R-CRAN-END/{good=0}' \
+ reproduce/software/config/versions.conf \
+ | awk '!/^#/' \
+ | sed 's/-version = /-/g')
else
- # Append the version of each software to its name. We are using a Make
+ # Append the version of each software package to its name. We are using a Make
# feature where a variable name is defined with another variable.
targets-python := $(foreach p,$(top-level-python),$(p)-$($(p)-version))
+ targets-r-cran := $(foreach p,$(top-level-r-cran),$(p)-$($(p)-version))
targets-proglib := $(foreach p,$(top-level-programs),$(p)-$($(p)-version))
endif
@@ -100,6 +114,7 @@ endif
# Ultimate Makefile target.
all: $(foreach p, $(targets-proglib), $(ibidir)/$(p)) \
$(foreach p, $(targets-python), $(ipydir)/$(p)) \
+ $(foreach p, $(targets-r-cran), $(ircrandir)/$(p)) \
$(itidir)/texlive
# Define the shell environment
@@ -112,14 +127,18 @@ all: $(foreach p, $(targets-proglib), $(ibidir)/$(p)) \
#
# To investigate:
#
-# 1) Set SHELL to `$(ibdir)/env - NAME=VALUE $(ibdir)/bash' and set all
-# the parameters defined bellow as `NAME=VALUE' statements before
+# 1) Set SHELL to '$(ibdir)/env - NAME=VALUE $(ibdir)/bash' and set all
+# the parameters defined bellow as 'NAME=VALUE' statements before
# calling Bash. This will enable us to completely ignore the user's
# native environment.
#
-# 2) Add `--noprofile --norc' to `.SHELLFLAGS' so doesn't load the
+# 2) Add '--noprofile --norc' to '.SHELLFLAGS' so doesn't load the
# user's environment.
#
+# 3) Add the '-u' flag so that an error occurs if an environment
+# variable is empty; this reduces the chance of catastrophic
+# file removal with 'rm -fr ../../$${FORGOT_TO_DEFINE_THIS}'.
+#
# Shell settings similar to 'basic.mk':
.ONESHELL:
export PATH := $(ibdir)
@@ -131,6 +150,9 @@ export PKG_CONFIG_LIBDIR := $(ildir)/pkgconfig
export CPPFLAGS := -I$(idir)/include -Wno-nullability-completeness
export PKG_CONFIG_PATH := $(ildir)/pkgconfig:$(idir)/share/pkgconfig
+# Disable built-in rules (which are not needed here!)
+.SUFFIXES:
+
# Settings specific to this Makefile.
export CC := $(ibdir)/gcc
export CXX := $(ibdir)/g++
@@ -147,16 +169,16 @@ export C_INCLUDE_PATH := $(iidir)
export CPLUS_INCLUDE_PATH := $(iidir)
endif
-# Recipe startup script, see `reproduce/software/shell/bashrc.sh'.
+# Recipe startup script, see 'reproduce/software/shell/bashrc.sh'.
export PROJECT_STATUS := configure_highlevel
export BASH_ENV := $(shell pwd)/reproduce/software/shell/bashrc.sh
# Until we build our own C library, without this, our GCC won't be able to
# compile anything! Note that on most systems (in particular
-# non-Debian-based), `sys_cpath' will be empty.
+# non-Debian-based), 'sys_cpath' will be empty.
export CPATH := $(sys_cpath)
-# RPATH is automatically written in macOS, so `DYLD_LIBRARY_PATH' is
+# RPATH is automatically written in macOS, so 'DYLD_LIBRARY_PATH' is
# ultimately redundant. But on some systems, even having a single value
# causes crashs (see bug #56682). So we'll just give it no value at all.
export DYLD_LIBRARY_PATH :=
@@ -164,8 +186,8 @@ export DYLD_LIBRARY_PATH :=
# On Debian-based OSs, the basic C libraries are in a target-specific
# location, not in standard places. Until we merge the building of the C
# library, it is thus necessary to include this location here. On systems
-# that don't need it, `sys_library_path' is just empty. This is necessary
-# for `ld'.
+# that don't need it, 'sys_library_path' is just empty. This is necessary
+# for 'ld'.
#
# If this variable is not defined, it will be interpretted as the current
# directory. In this case, when the program source has a 'specs' directory,
@@ -179,12 +201,18 @@ endif
# Building flags:
#
# C++ flags: when we build GCC, the C++ standard library needs to link with
-# libiconv. So it is necessary to generically include `-liconv' for all C++
+# libiconv. So it is necessary to generically include '-liconv' for all C++
# builds.
ifeq ($(host_cc),0)
export CXXFLAGS := -liconv
endif
+# Custom installation prefix for software that can cause conflicts with
+# others, to avoid crowding the to Maneage installed software directory,
+# we'll put them all in a 'custom' directory.
+idircustom = $(idir)/custom
+$(idircustom):; mkdir $@
+
# Servers to use as backup. Maneage already has some fixed servers that can
# be used to download software tarballs. They are in a configuation
# file. But we give precedence to the "user" backup servers.
@@ -211,6 +239,8 @@ backupservers = $(filter-out $(topbackupserver),$(backupservers_all))
# Import rules to build specialized software
include reproduce/software/make/xorg.mk
include reproduce/software/make/python.mk
+include reproduce/software/make/r-cran.mk
+
@@ -226,61 +256,27 @@ include reproduce/software/make/python.mk
#
# We would prefer to build static libraries, but some compilers like LLVM
# don't have static capabilities, so they'll only build dynamic/shared
-# libraries. Therefore, we can't use the easy `.a' suffix for static
+# libraries. Therefore, we can't use the easy '.a' suffix for static
# libraries as targets and there are different conventions for shared
# library names.
-
-# Until version 0.11.0 is released, we are using the version corresponding
-# to commit 014954db (603 commits after version 0.10.0, most recent when
-# first importing log4cxx into this project).
-#
-# Note that after cloning the project, the following changes are necessary
-# in `configure.ac'.
-# - Update the final name of the tarball and its version (from `git
-# - describe') by modifying the `AC_INIT' line:
-# AC_INIT([apachelog4cxx], [0.10.0-603-014954db])
-# - Because of the long file names in the project, some files will not be
-# packaged by default, so pass the `tar-ustar' option to Automake (the
-# `AM_INIT_AUTOMAKE' line of `configure.ac':
-# AM_INIT_AUTOMAKE([foreign subdir-objects -Wall tar-ustar])
-#
-# You can then simply bootstrap the project and make the distribution
-# tarball like this:
-# ./autogen.sh && ./configure && make -j8 && make dist-lzip
-#
-# Unfortunately we have to re-run the `autogen.sh' script on the tarball to
-# build it because it will complain about the version of libtool, so until
-# the version 0.11.0 of log4cxx, we'll have to run `autogen.sh' on the
-# unpacked source also.
$(ibidir)/apachelog4cxx-$(apachelog4cxx-version): \
+ $(ibidir)/cmake-$(cmake-version) \
$(ibidir)/expat-$(expat-version) \
$(ibidir)/apr-util-$(apr-util-version) \
$(ibidir)/automake-$(automake-version)
- tarball=apachelog4cxx-$(apachelog4cxx-version).tar.lz
+ tarball=apache-log4cxx-$(apachelog4cxx-version).tar.lz
$(call import-source, $(apachelog4cxx-url), $(apachelog4cxx-checksum))
- pdir=apachelog4cxx-$(apachelog4cxx-version)
- rm -rf $(ddir)/$$pdir
- topdir=$(pwd)
- cd $(ddir)
- tar xf $(tdir)/$$tarball
- cd $$pdir
- ./autogen.sh
- ./configure SHELL=$(ibdir)/bash --prefix=$(idir)
- make -j$(numthreads) SHELL=$(ibdir)/bash
- make install
- cd ..
- rm -rf $$pdir
- cd $$topdir
+ $(call cbuild, apache-log4cxx-$(apachelog4cxx-version), static)
echo "Apache log4cxx $(apachelog4cxx-version)" > $@
$(ibidir)/apr-$(apr-version):
- tarball=apr-$(apr-version).tar.gz
+ tarball=apr-$(apr-version).tar.lz
$(call import-source, $(apr-url), $(apr-checksum))
$(call gbuild, apr-$(apr-version), ,--disable-static)
echo "Apache Portable Runtime $(apr-version)" > $@
$(ibidir)/apr-util-$(apr-util-version): $(ibidir)/apr-$(apr-version)
- tarball=apr-util-$(apr-util-version).tar.gz
+ tarball=apr-util-$(apr-util-version).tar.lz
$(call import-source, $(apr-util-url), $(apr-util-checksum))
$(call gbuild, apr-util-$(apr-util-version), , \
--disable-static \
@@ -291,20 +287,19 @@ $(ibidir)/apr-util-$(apr-util-version): $(ibidir)/apr-$(apr-version)
$(ibidir)/atlas-$(atlas-version):
- tarball=lapack-$(lapack-version).tar.gz
+ tarball=lapack-$(lapack-version).tar.lz
$(call import-source, $(lapack-url), $(lapack-checksum))
- tarball=atlas-$(atlas-version).tar.bz2
+ tarball=atlas-$(atlas-version).tar.lz
$(call import-source, $(atlas-url), $(atlas-checksum))
- # Get the operating system specific features (how to get
- # CPU frequency and the library suffixes). To make the steps
- # more readable, the different library version suffixes are
- # named with a single character: `s' for no version in the
- # name, `m' for the major version suffix, and `f' for the
- # full version suffix.
- # GCC in Mac OS doesn't work. To work around this issue, on Mac
- # systems we force ATLAS to use `clang' instead of `gcc'.
+# Get the operating system specific features (how to get CPU
+# frequency and the library suffixes). To make the steps more
+# readable, the different library version suffixes are named with a
+# single character: 's' for no version in the name, 'm' for the major
+# version suffix, and 'f' for the full version suffix. GCC in Mac OS
+# doesn't work. To work around this issue, on Mac systems we force
+# ATLAS to use 'clang' instead of 'gcc'.
if [ x$(on_mac_os) = xyes ]; then
s=dylib
m=3.dylib
@@ -321,8 +316,8 @@ $(ibidir)/atlas-$(atlas-version):
| sed "s/.*: \([0-9.]*\).*/\1/")
fi
- # See if the shared libraries should be build for a single CPU
- # thread or multiple threads.
+# See if the shared libraries should be build for a single CPU thread
+# or multiple threads.
N=$$(nproc)
srcdir=$$(pwd)/reproduce/software/make
if [ $$N = 1 ]; then
@@ -331,25 +326,25 @@ $(ibidir)/atlas-$(atlas-version):
sharedmk=$$srcdir/atlas-multiple.mk
fi
- # The linking step here doesn't recognize the `-Wl' in the
- # `rpath_command'.
+# The linking step here doesn't recognize the '-Wl' in the
+# 'rpath_command'.
export LDFLAGS=-L$(ildir)
cd $(ddir)
- tar xf $(tdir)/atlas-$(atlas-version).tar.bz2
+ tar -xf $(tdir)/atlas-$(atlas-version).tar.lz
cd ATLAS
rm -rf build
mkdir build
cd build
../configure -b 64 -D c -DPentiumCPS=$$core \
- --with-netlib-lapack-tarfile=$(tdir)/lapack-$(lapack-version).tar.gz \
+ --with-netlib-lapack-tarfile=$(tdir)/lapack-$(lapack-version).tar.lz \
--cripple-atlas-performance \
-Fa alg -fPIC --shared $$clangflag \
--prefix=$(idir)
- # Static build.
+# Static build.
make
- # Currently the shared libraries have problems on macOS.
+# Currently the shared libraries have problems on macOS.
if [ "x$(on_mac_os)" != xyes ]; then
cd lib
make -f $$sharedmk
@@ -362,21 +357,21 @@ $(ibidir)/atlas-$(atlas-version):
ln -fs $(ildir)/liblapack.$$f $(ildir)/liblapack.$$m
fi
- # Install the libraries.
+# Install the libraries.
make install
- # We need to check the existance of `libptlapack.a', but we can't
- # do this in the `&&' steps above (it will conflict). So we'll do
- # the check after seeing if `libtatlas.so' is installed, then we'll
- # finalize the build (delete the untarred directory).
+# We need to check the existance of 'libptlapack.a', but we can't do
+# this in the '&&' steps above (it will conflict). So we'll do the
+# check after seeing if 'libtatlas.so' is installed, then we'll
+# finalize the build (delete the untarred directory).
if [ "x$(on_mac_os)" != xyes ]; then \
[ -e lib/libptlapack.a ] && cp lib/libptlapack.a $(ildir); \
cd $(ddir); \
rm -rf ATLAS; \
fi
- # We'll check the full installation with the static library (not
- # currently building shared library on Mac.
+# We'll check the full installation with the static library (not
+# currently building shared library on Mac.
if [ -f $(ildir)/libatlas.a ]; then \
echo "ATLAS $(atlas-version)" > $@; \
fi
@@ -391,7 +386,7 @@ $(ibidir)/boost-$(boost-version): \
rm -rf $(ddir)/$$unpackdir
topdir=$(pwd)
cd $(ddir)
- tar xf $(tdir)/$$tarball
+ tar -xf $(tdir)/$$tarball
cd $$unpackdir
./bootstrap.sh --prefix=$(idir) --with-libraries=all \
--with-python=python3
@@ -404,15 +399,15 @@ $(ibidir)/boost-$(boost-version): \
$(ibidir)/cfitsio-$(cfitsio-version):
- # Download the tarball
- tarball=cfitsio-$(cfitsio-version).tar.gz
+# Download the tarball
+ tarball=cfitsio-$(cfitsio-version).tar.lz
$(call import-source, $(cfitsio-url), $(cfitsio-checksum))
- # CFITSIO hard-codes '@rpath' inside the shared library on
- # Mac systems. So we need to change it to our library
- # installation path. It doesn't affect GNU/Linux, so we'll
- # just do it in any case to keep things clean.
- topdir=$(pwd); cd $(ddir); tar xf $(tdir)/$$tarball
+# CFITSIO hard-codes '@rpath' inside the shared library on Mac
+# systems. So we need to change it to our library installation
+# path. It doesn't affect GNU/Linux, so we'll just do it in any case
+# to keep things clean.
+ topdir=$(pwd); cd $(ddir); tar -xf $(tdir)/$$tarball
customtar=cfitsio-$(cfitsio-version)-custom.tar.gz
cd cfitsio-$(cfitsio-version)
sed configure -e's|@rpath|$(ildir)|g' > configure_tmp
@@ -422,9 +417,9 @@ $(ibidir)/cfitsio-$(cfitsio-version):
tar cf $$customtar cfitsio-$(cfitsio-version)
cd $$topdir
- # Continue the standard build on the customized tarball. Note that
- # with the installation of CFITSIO, `fpack' and `funpack' are not
- # installed by default. Because of that, they are added explicity.
+# Continue the standard build on the customized tarball. Note that
+# with the installation of CFITSIO, 'fpack' and 'funpack' are not
+# installed by default. Because of that, they are added explicity.
export gbuild_tar=$(ddir)/$$customtar
$(call gbuild, cfitsio-$(cfitsio-version), , \
--enable-sse2 --enable-reentrant \
@@ -437,24 +432,25 @@ $(ibidir)/cairo-$(cairo-version): \
$(ibidir)/pixman-$(pixman-version) \
$(ibidir)/libpng-$(libpng-version) \
$(ibidir)/freetype-$(freetype-version)
- tarball=cairo-$(cairo-version).tar.xz
+ tarball=cairo-$(cairo-version).tar.lz
$(call import-source, $(cairo-url), $(cairo-checksum))
$(call gbuild, cairo-$(cairo-version), static, \
--with-x=yes, -j$(numthreads) V=1)
echo "Cairo $(cairo-version)" > $@
# Eigen is just headers! So it doesn't need to be compiled. Once unpacked
-# it has a checksum after `eigen-eigen', so we'll just use a `*' to choose
+# it has a checksum after 'eigen-eigen', so we'll just use a '*' to choose
# the unpacked directory.
$(ibidir)/eigen-$(eigen-version):
- tarball=eigen-$(eigen-version).tar.gz
+ tarball=eigen-$(eigen-version).tar.lz
$(call import-source, $(eigen-url), $(eigen-checksum))
rm -rf $(ddir)/eigen-eigen-*
- topdir=$(pwd); cd $(ddir); tar xf $(tdir)/$$tarball
- cd eigen-eigen-*
- cp -r Eigen $(iidir)/eigen3
+ topdir=$(pwd); cd $(ddir); tar -xf $(tdir)/$$tarball
+ cd eigen-$(eigen-version)
+ if ! [ -d $(iidir)/eigen3 ]; then mkdir $(iidir)/eigen3; fi
+ cp -r Eigen/* $(iidir)/eigen3/
cd $$topdir
- rm -rf $(ddir)/eigen-eigen-*
+ rm -rf $(ddir)/eigen-$(eigen-version)
echo "Eigen $(eigen-version)" > $@
# GNU Emacs is an advanced text editor (among many other things!), so it
@@ -468,7 +464,7 @@ $(ibidir)/eigen-$(eigen-version):
# except the core Emacs functionality (using '--without-all') and we are
# also disabling all graphic user interface features (using '--without-x').
$(ibidir)/emacs-$(emacs-version):
- tarball=emacs-$(emacs-version).tar.xz
+ tarball=emacs-$(emacs-version).tar.lz
$(call import-source, $(emacs-url), $(emacs-checksum))
$(call gbuild, emacs-$(emacs-version), static, \
--without-all --without-x \
@@ -483,15 +479,28 @@ $(ibidir)/expat-$(expat-version):
echo "Expat $(expat-version)" > $@
$(ibidir)/fftw-$(fftw-version):
- # Prepare the source tarball.
- tarball=fftw-$(fftw-version).tar.gz
+
+# Prepare the source tarball.
+ tarball=fftw-$(fftw-version).tar.lz
$(call import-source, $(fftw-url), $(fftw-checksum))
- # FFTW's single and double precission libraries must be built
- # independently: for the the single-precision library, we need to
- # add the `--enable-float' option. We will build this first, then
- # the default double-precision library.
- confop="--enable-shared --enable-threads --enable-avx --enable-sse2"
+# FFTW's single and double precision libraries must be built
+# independently: for the the single-precision library, we need to add
+# the '--enable-float' option. We will build this first, then the
+# default double-precision library.
+#
+# There are Intel-specific optimizations that can be enabled by
+# adding the following two options to 'confop'
+#
+# --enable-avx --enable-sse2
+#
+# However, they cause crashs on non-Intel processors (has been
+# confirmed in ARM's aarch64). So in the generic scenario they are
+# removed. Checking how these optimizations affect the numeric
+# accuracy of the result (and thus optionally adding them for
+# Intel-based processors) should be studied before they are
+# optionally added for Intel-based CPUs (and ignored for others).
+ confop="--enable-shared --enable-threads"
$(call gbuild, fftw-$(fftw-version), static, \
$$confop --enable-float)
$(call gbuild, fftw-$(fftw-version), static, \
@@ -500,19 +509,19 @@ $(ibidir)/fftw-$(fftw-version):
echo "FFTW $(fftw-version) \citep{fftw}" > $@
$(ibidir)/freetype-$(freetype-version): $(ibidir)/libpng-$(libpng-version)
- tarball=freetype-$(freetype-version).tar.gz
+ tarball=freetype-$(freetype-version).tar.lz
$(call import-source, $(freetype-url), $(freetype-checksum))
$(call gbuild, freetype-$(freetype-version), static)
echo "FreeType $(freetype-version)" > $@
$(ibidir)/gperf-$(gperf-version):
- tarball=gperf-$(gperf-version).tar.gz
+ tarball=gperf-$(gperf-version).tar.lz
$(call import-source, $(gperf-url), $(gperf-checksum))
$(call gbuild, gperf-$(gperf-version), static)
echo "GNU gperf $(gperf-version)" > $@
$(ibidir)/gsl-$(gsl-version):
- tarball=gsl-$(gsl-version).tar.gz
+ tarball=gsl-$(gsl-version).tar.lz
$(call import-source, $(gsl-url), $(gsl-checksum))
$(call gbuild, gsl-$(gsl-version), static)
echo "GNU Scientific Library $(gsl-version)" > $@
@@ -531,14 +540,14 @@ $(ibidir)/hdf5-$(hdf5-version): $(ibidir)/openmpi-$(openmpi-version)
# HEALPix includes the source of its C, C++, Python (and several other
# languages) libraries within one tarball. We will include the Python
# installation only when any other Python module is requested (in
-# `TARGETS.conf').
+# 'TARGETS.conf').
#
-# Note that the default `./configure' script is an interactive script which
-# is hard to automate. So we need to go into the `autotools' directory of
-# the `C' and `cxx' directories and configure the GNU Build System (with
-# `autoreconf', which uses `autoconf' and `automake') to easily build the
+# Note that the default './configure' script is an interactive script which
+# is hard to automate. So we need to go into the 'autotools' directory of
+# the 'C' and 'cxx' directories and configure the GNU Build System (with
+# 'autoreconf', which uses 'autoconf' and 'automake') to easily build the
# HEALPix C/C++ libraries in batch mode.
-ifeq ($(strip $(top-level-python)),)
+ifeq ($(strip $(targets-python)),)
healpix-python-dep =
else
healpix-python-dep = $(ipydir)/matplotlib-$(matplotlib-version) \
@@ -548,7 +557,7 @@ $(ibidir)/healpix-$(healpix-version): $(healpix-python-dep) \
$(ibidir)/cfitsio-$(cfitsio-version) \
$(ibidir)/autoconf-$(autoconf-version) \
$(ibidir)/automake-$(automake-version)
- tarball=healpix-$(healpix-version).tar.gz
+ tarball=healpix-$(healpix-version).tar.lz
$(call import-source, $(healpix-url), $(healpix-checksum))
if [ x"$(healpix-python-dep)" = x ]; then
pycommand1="echo no-healpy-because-no-other-python"
@@ -559,7 +568,7 @@ $(ibidir)/healpix-$(healpix-version): $(healpix-python-dep) \
fi
rm -rf $(ddir)/Healpix_$(healpix-version)
topdir=$(pwd); cd $(ddir);
- tar xf $(tdir)/$$tarball
+ tar -xf $(tdir)/$$tarball
cd Healpix_$(healpix-version)/src/C/autotools/
autoreconf --install
./configure --prefix=$(idir)
@@ -568,6 +577,13 @@ $(ibidir)/healpix-$(healpix-version): $(healpix-python-dep) \
cd ../../cxx/autotools/
autoreconf --install
./configure --prefix=$(idir)
+
+# With CFITSIO 4.0, the 'CFITSIO_VERSION' macro has three
+# components. But this version of Healpix doesn't yet account for
+# this.
+ sed -i -e's/CFITSIO_VERSION/fitsversion/' cxxsupport/fitshandle.cc
+
+# Continue with the building.
make V=1 -j$(numthreads) SHELL=$(ibdir)/bash
make install
cd ../../healpy
@@ -578,19 +594,52 @@ $(ibidir)/healpix-$(healpix-version): $(healpix-python-dep) \
cp $(dtexdir)/healpix.tex $(ictdir)/
echo "HEALPix $(healpix-version) \citep{healpix}" > $@
+$(ibidir)/libbsd-$(libbsd-version): $(ibidir)/libmd-$(libmd-version)
+ tarball=libbsd-$(libbsd-version).tar.lz
+ $(call import-source, $(libbsd-url), $(libbsd-checksum))
+ if [ x$(on_mac_os) = xyes ]; then
+ echo "" > $@
+ else
+ export LDFLAGS="-L$(idirlibmd)/lib $$LDFLAGS"
+ export CPPFLAGS="-I$(idirlibmd)/include $$CPPFLAGS"
+ $(call gbuild, libbsd-$(libbsd-version), static,,V=1)
+ echo "Libbsd $(libbsd-version)" > $@
+ fi
+
$(ibidir)/libidn-$(libidn-version):
- tarball=libidn-$(libidn-version).tar.gz
+ tarball=libidn-$(libidn-version).tar.lz
$(call import-source, $(libidn-url), $(libidn-checksum))
$(call gbuild, libidn-$(libidn-version), static, \
--disable-doc, -j$(numthreads) V=1)
echo "Libidn $(libidn-version)" > $@
$(ibidir)/libjpeg-$(libjpeg-version):
- tarball=jpegsrc.$(libjpeg-version).tar.gz
+ tarball=libjpeg-$(libjpeg-version).tar.lz
$(call import-source, $(libjpeg-url), $(libjpeg-checksum))
- $(call gbuild, jpeg-9b, static,,V=1)
+ $(call gbuild, libjpeg-$(libjpeg-version), static,,V=1)
echo "Libjpeg $(libjpeg-version)" > $@
+# libmd is a set of "message digest" functions that are available in in the
+# C library of BSD-based systems, but not others (like GNU-based
+# systems). It includes hash functions like MD5 and SHAs.
+#
+# Libmd is being installed in a non-standard location because its headers
+# (like 'md5.h') will conflict with similarly named headers by the system
+# during the building of Binutils later! So any program that needs libmd's
+# headers or libraries (like 'libbsd'), should add this special location to
+# its CPPFLAGS and LDFLAGS.
+idirlibmd=$(idircustom)/libmd
+$(ibidir)/libmd-$(libmd-version): | $(idircustom)
+ tarball=libmd-$(libmd-version).tar.lz
+ $(call import-source, $(libmd-url), $(libmd-checksum))
+ if [ x$(on_mac_os) = xyes ]; then
+ echo "" > $@
+ else
+ export gbuild_prefix=$(idirlibmd)
+ $(call gbuild, libmd-$(libmd-version), static,,V=1)
+ echo "Libmd $(libmd-version)" > $@
+ fi
+
$(ibidir)/libnsl-$(libnsl-version): \
$(ibidir)/libtirpc-$(libtirpc-version) \
$(ibidir)/rpcsvc-proto-$(rpcsvc-proto-version)
@@ -603,11 +652,11 @@ $(ibidir)/libnsl-$(libnsl-version): \
$(ibidir)/libpaper-$(libpaper-version): \
$(ibidir)/automake-$(automake-version)
- # Download the tarball.
- tarball=libpaper-$(libpaper-version).tar.gz
+# Download the tarball.
+ tarball=libpaper-$(libpaper-version).tar.lz
$(call import-source, $(libpaper-url), $(libpaper-checksum))
- # Unpack, build the configure system, build and install.
+# Unpack, build the configure system, build and install.
cd $(ddir)
tar -xf $(tdir)/$$tarball
unpackdir=libpaper-$(libpaper-version)
@@ -620,10 +669,10 @@ $(ibidir)/libpaper-$(libpaper-version): \
cd ..
rm -rf $$unpackdir
- # Post-processing: according to Linux From Scratch, libpaper
- # expects that packages will install files into this directory and
- # 'paperconfig' is a script which will invoke 'run-parts' if
- # '/etc/libpaper.d' exists
+# Post-processing: according to Linux From Scratch, libpaper expects
+# that packages will install files into this directory and
+# 'paperconfig' is a script which will invoke 'run-parts' if
+# '/etc/libpaper.d' exists
mkdir -vp $(idir)/etc/libpaper.d
sed -e's|MANEAGESHELL|$(SHELL)|' $(shsrcdir)/run-parts.in \
> $(ibdir)/run-parts
@@ -631,15 +680,19 @@ $(ibidir)/libpaper-$(libpaper-version): \
echo "Libpaper $(libpaper-version)" > $@
$(ibidir)/libpng-$(libpng-version):
- tarball=libpng-$(libpng-version).tar.xz
+
+# The option '-DPNG_ARM_NEON_OPT=0' prevents an arm64 'neon' library
+# from being required at compile time.
+ tarball=libpng-$(libpng-version).tar.lz
$(call import-source, $(libpng-url), $(libpng-checksum))
- $(call gbuild, libpng-$(libpng-version), static)
+ $(call gbuild, libpng-$(libpng-version), static, \
+ CFLAGS="-DPNG_ARM_NEON_OPT=0")
echo "Libpng $(libpng-version)" > $@
$(ibidir)/libtiff-$(libtiff-version): $(ibidir)/libjpeg-$(libjpeg-version)
- tarball=tiff-$(libtiff-version).tar.gz
+ tarball=libtiff-$(libtiff-version).tar.lz
$(call import-source, $(libtiff-url), $(libtiff-checksum))
- $(call gbuild, tiff-$(libtiff-version), static, \
+ $(call gbuild, libtiff-$(libtiff-version), static, \
--disable-jbig \
--disable-webp \
--disable-zstd)
@@ -652,12 +705,90 @@ $(ibidir)/libtirpc-$(libtirpc-version):
--disable-gssapi, V=1)
echo "libtirpc $(libtirpc-version)" > $@
+# Metastore is used (through a Git hook) to restore the source modification
+# dates of files after a Git checkout. Another Git hook saves all file
+# metadata just before a commit (to allow restoration after a
+# checkout). Since this project is managed in Makefiles, file modification
+# dates are critical to not having to redo the whole analysis after
+# checking out between branches.
+#
+# Note that we aren't using the standard version of Metastore, but a fork
+# of it that is maintained in this repository:
+# https://gitlab.com/makhlaghi/metastore-fork
+#
+# Libbsd is not necessary on macOS systems, because macOS is already a
+# BSD-based distribution. But on GNU/Linux systems, it is necessary.
+$(ibidir)/metastore-$(metastore-version): \
+ $(ibidir)/libbsd-$(libbsd-version)
+
+# Download the tarball.
+ tarball=metastore-$(metastore-version).tar.lz
+ $(call import-source, $(metastore-url), $(metastore-checksum))
+
+# Metastore doesn't have any './configure' script. So we'll just call
+# 'pwd' as a place-holder for the './configure' command.
+#
+# File attributes are also not available on some systems, since the
+# main purpose here is modification dates (and not attributes), we'll
+# also set the 'NO_XATTR' flag.
+#
+# After installing Metastore, write the relevant hooks into this
+# system's Git hooks, while setting the system-specific
+# directories/files.
+#
+# Note that the metastore -O and -G options used in this template are
+# currently only available in a fork of 'metastore' hosted at:
+# https://github.com/mohammad-akhlaghi/metastore
+#
+# Checking for presence of '.git'. When the project source is
+# downloaded from a non-Git source (for example from arXiv), there is
+# no '.git' directory to work with. So until we find a better
+# solution, avoid the step to to add the Git hooks.
+ current_dir=$$(pwd); \
+ $(call gbuild, metastore-$(metastore-version), static,, \
+ NO_XATTR=1 V=1,,pwd,PREFIX=$(idir))
+
+# Correct RPATH when necessary.
+ if [ -f $(ibdir)/patchelf ]; then
+ $(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/metastore
+ fi
+
+# If this project is being built in a directory version controlled
+# by Git, copy the hooks into the Git configuation.
+ if [ -f $(ibdir)/metastore ]; then
+ if [ -d .git ]; then
+ user=$$(whoami)
+ group=$$(groups | awk '{print $$1}')
+ cd $$current_dir
+ for f in pre-commit post-checkout; do
+ sed -e's|@USER[@]|'$$user'|g' \
+ -e's|@GROUP[@]|'$$group'|g' \
+ -e's|@BINDIR[@]|$(ibdir)|g' \
+ -e's|@TOP_PROJECT_DIR[@]|'$$current_dir'|g' \
+ reproduce/software/shell/git-$$f > .git/hooks/$$f
+ chmod +x .git/hooks/$$f
+ done
+ fi
+ echo "Metastore (forked) $(metastore-version)" > $@
+ else
+ echo; echo; echo
+ echo "*****************"
+ echo "metastore couldn't be installed!"
+ echo
+ echo "Its used for preserving timestamps on Git commits."
+ echo "Its useful for development, not simple running of "
+ echo "the project. So we won't stop the configuration "
+ echo "because it wasn't built."
+ echo "*****************"
+ echo "" > $@
+ fi
+
$(ibidir)/openblas-$(openblas-version):
- tarball=OpenBLAS-$(openblas-version).tar.gz
+ tarball=OpenBLAS-$(openblas-version).tar.lz
$(call import-source, $(openblas-url), $(openblas-checksum))
if [ x$(on_mac_os) = xyes ]; then export CC=clang; fi
cd $(ddir)
- tar xf $(tdir)/$$tarball
+ tar -xf $(tdir)/$$tarball
cd OpenBLAS-$(openblas-version)
make -j$(numthreads)
make PREFIX=$(idir) install
@@ -666,7 +797,7 @@ $(ibidir)/openblas-$(openblas-version):
echo "OpenBLAS $(openblas-version)" > $@
$(ibidir)/openmpi-$(openmpi-version):
- tarball=openmpi-$(openmpi-version).tar.gz
+ tarball=openmpi-$(openmpi-version).tar.lz
$(call import-source, $(openmpi-url), $(openmpi-checksum))
$(call gbuild, openmpi-$(openmpi-version), static, \
--with-pmix=internal \
@@ -692,22 +823,22 @@ $(ibidir)/openssh-$(openssh-version):
echo "OpenSSH $(openssh-version)" > $@
$(ibidir)/pixman-$(pixman-version):
- tarball=pixman-$(pixman-version).tar.gz
+ tarball=pixman-$(pixman-version).tar.lz
$(call import-source, $(pixman-url), $(pixman-checksum))
$(call gbuild, pixman-$(pixman-version), static, , \
-j$(numthreads) V=1)
echo "Pixman $(pixman-version)" > $@
$(ibidir)/rpcsvc-proto-$(rpcsvc-proto-version):
- # 'libintl' is installed as part of GNU Gettext in
- # 'basic.mk'. rpcsvc-proto needs to link with it on macOS.
+# 'libintl' is installed as part of GNU Gettext in
+# 'basic.mk'. rpcsvc-proto needs to link with it on macOS.
if [ x$(on_mac_os) = xyes ]; then
export CC=clang
export CXX=clang++
export LDFLAGS="-lintl $$LDFLAGS"
fi
- # Download the tarball and build rpcsvc-proto.
+# Download the tarball and build rpcsvc-proto.
tarball=rpcsvc-proto-$(rpcsvc-proto-version).tar.xz
$(call import-source, $(rpcsvc-proto-url), $(rpcsvc-proto-checksum))
$(call gbuild, rpcsvc-proto-$(rpcsvc-proto-version), static)
@@ -721,35 +852,10 @@ $(ibidir)/tides-$(tides-version):
cp $(dtexdir)/tides.tex $(ictdir)/
echo "TIDES $(tides-version) \citep{tides}" > $@
-$(ibidir)/valgrind-$(valgrind-version): \
- $(ibidir)/patch-$(patch-version) \
- $(ibidir)/autoconf-$(autoconf-version) \
- $(ibidir)/automake-$(automake-version)
- # Import the tarball
- tarball=valgrind-$(valgrind-version).tar.bz2
+$(ibidir)/valgrind-$(valgrind-version):
+ tarball=valgrind-$(valgrind-version).tar.lz
$(call import-source, $(valgrind-url), $(valgrind-checksum))
-
- # For valgrind-3.15.0, see
- # https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=946329 for a
- # report on an MPI-related compile bug and the two patches
- # below. These two patches and `automake` should allow valgrind to
- # compile with gcc-9.2.0.
- cd $(ddir)
- tar -xf $(tdir)/$$tarball
- valgrinddir=valgrind-$(valgrind-version)
- cd $${valgrinddir}
- printf "valgrindir=$${valgrinddir} ; pwd = %s .\n" $$($(ibdir)/pwd)
- if [ "x$(valgrind-version)" = "x3.15.0" ]; then
- patch --verbose -p1 < $(patchdir)/valgrind-3.15.0-mpi-fix1.patch
- patch --verbose -p1 < $(patchdir)/valgrind-3.15.0-mpi-fix2.patch
- fi
- autoreconf
- ./configure --prefix=$(idir)
- make -j$(numthreads)
- if ! make check -j$(numthreads); then
- echo; echo "Valgrind's 'make check' failed!"; echo
- fi
- make install
+ $(call gbuild, valgrind-$(valgrind-version), static)
echo "Valgrind $(valgrind-version)" > $@
$(ibidir)/yaml-$(yaml-version):
@@ -773,47 +879,48 @@ $(ibidir)/yaml-$(yaml-version):
# manually.
#
# For example, Libgit2 page recommends doing a static build, especially for
-# Mac systems (with `-DBUILD_SHARED_LIBS=OFF'): "It’s highly recommended
+# Mac systems (with '-DBUILD_SHARED_LIBS=OFF'): "It’s highly recommended
# that you build libgit2 as a static library for Xcode projects. This
# simplifies distribution significantly, as the resolution of dynamic
# libraries at runtime can be extremely problematic.". This is a major
# problem we have been having so far with Mac systems:
# https://libgit2.org/docs/guides/build-and-link
-# On macOS system, `libgit2' complains about not finding `_iconv*'
-# functions! But apparently `libgit2' has its own implementation of libiconv
+# On macOS system, 'libgit2' complains about not finding '_iconv*'
+# functions! But apparently 'libgit2' has its own implementation of libiconv
# that it uses if it can't find libiconv on macOS. So, to fix this problem
-# it is necessary to use the option `-DUSE_ICONV=OFF` in the configure step.
+# it is necessary to use the option '-DUSE_ICONV=OFF' in the configure step.
$(ibidir)/libgit2-$(libgit2-version): $(ibidir)/cmake-$(cmake-version)
- tarball=libgit2-$(libgit2-version).tar.gz
+ tarball=libgit2-$(libgit2-version).tar.lz
$(call import-source, $(libgit2-url), $(libgit2-checksum))
$(call cbuild, libgit2-$(libgit2-version), static, \
-DUSE_SSH=OFF -DBUILD_CLAR=OFF \
-DTHREADSAFE=ON -DUSE_ICONV=OFF )
if [ x$(on_mac_os) = xyes ]; then
- install_name_tool -id $(ildir)/libgit2.1.0.dylib \
- $(ildir)/libgit2.1.0.dylib
+ install_name_tool -id $(ildir)/libgit2.1.3.dylib \
+ $(ildir)/libgit2.1.3.dylib
fi
echo "Libgit2 $(libgit2-version)" > $@
$(ibidir)/wcslib-$(wcslib-version): $(ibidir)/cfitsio-$(cfitsio-version)
- # Import the tarball.
- tarball=wcslib-$(wcslib-version).tar.bz2
+
+# Import the tarball.
+ tarball=wcslib-$(wcslib-version).tar.lz
$(call import-source, $(wcslib-url), $(wcslib-checksum))
- # If Fortran isn't present, don't build WCSLIB with it.
+# If Fortran isn't present, don't build WCSLIB with it.
if type gfortran &> /dev/null; then fortranopt="";
else fortranopt="--disable-fortran"
fi
- # Build WCSLIB.
+# Build WCSLIB.
$(call gbuild, wcslib-$(wcslib-version), , \
LIBS="-pthread -lcurl -lm" \
--with-cfitsiolib=$(ildir) \
--with-cfitsioinc=$(idir)/include \
--without-pgplot $$fortranopt)
if [ x$(on_mac_os) = xyes ]; then
- install_name_tool -id $(ildir)/libwcs.7.3.dylib \
- $(ildir)/libwcs.7.3.dylib
+ install_name_tool -id $(ildir)/libwcs.7.7.dylib \
+ $(ildir)/libwcs.7.7.dylib
fi
echo "WCSLIB $(wcslib-version)" > $@
@@ -843,17 +950,17 @@ $(ibidir)/astrometrynet-$(astrometrynet-version): \
$(ibidir)/cfitsio-$(cfitsio-version) \
$(ibidir)/libjpeg-$(libjpeg-version)
- # Import the tarball
- tarball=astrometry.net-$(astrometrynet-version).tar.gz
+# Import the tarball
+ tarball=astrometry.net-$(astrometrynet-version).tar.lz
$(call import-source, $(astrometrynet-url), $(astrometrynet-checksum))
- # We are modifying the Makefile in two steps because on Mac OS
- # system we do not have `/proc/cpuinfo' nor `free'. Since this is
- # only for the `report.txt', this changes do not causes problems in
- # running `astrometrynet'
+# We are modifying the Makefile in two steps because on Mac OS system
+# we do not have '/proc/cpuinfo' nor 'free'. Since this is only for
+# the 'report.txt', this changes do not causes problems in running
+# 'astrometrynet'
cd $(ddir)
rm -rf astrometry.net-$(astrometrynet-version)
- tar xf $(tdir)/$$tarball
+ tar -xf $(tdir)/$$tarball
cd astrometry.net-$(astrometrynet-version)
sed -e 's|cat /proc/cpuinfo|echo "Ignoring CPU info"|' \
-e 's|-free|echo "Ignoring RAM info"|' Makefile > Makefile.tmp
@@ -874,7 +981,7 @@ $(ibidir)/autoconf-$(autoconf-version):
echo "GNU Autoconf $(autoconf-version)" > $@
$(ibidir)/automake-$(automake-version): $(ibidir)/autoconf-$(autoconf-version)
- tarball=automake-$(automake-version).tar.gz
+ tarball=automake-$(automake-version).tar.lz
$(call import-source, $(automake-url), $(automake-checksum))
$(call gbuild, automake-$(automake-version), static, ,V=1)
echo "GNU Automake $(automake-version)" > $@
@@ -886,17 +993,18 @@ $(ibidir)/bison-$(bison-version): $(ibidir)/help2man-$(help2man-version)
echo "GNU Bison $(bison-version)" > $@
# cdsclient is a set of software written in c to interact with astronomical
-# database servers. It is a dependency of `scamp' to be able to download
+# database servers. It is a dependency of 'scamp' to be able to download
# reference catalogues.
-# NOTE: we do not use a convencional `gbuild' installation because the
+#
+# NOTE: we do not use a convencional 'gbuild' installation because the
# programs are scripts and we need to touch them before installing.
# Otherwise this software will be re-built each time the configure step is
# invoked.
$(ibidir)/cdsclient-$(cdsclient-version):
- tarball=cdsclient-$(cdsclient-version).tar.gz
+ tarball=cdsclient-$(cdsclient-version).tar.lz
$(call import-source, $(cdsclient-url), $(cdsclient-checksum))
cd $(ddir)
- tar xf $(tdir)/$$tarball
+ tar -xf $(tdir)/$$tarball
cd cdsclient-$(cdsclient-version)
touch *
./configure --prefix=$(idir)
@@ -906,25 +1014,27 @@ $(ibidir)/cdsclient-$(cdsclient-version):
rm -rf cdsclient-$(cdsclient-version)
echo "cdsclient $(cdsclient-version)" > $@
-# CMake can be built with its custom `./bootstrap' script.
-$(ibidir)/cmake-$(cmake-version): $(ibidir)/curl-$(curl-version)
- # Import the tarball
- tarball=cmake-$(cmake-version).tar.gz
+# CMake can be built with its custom './bootstrap' script and has no
+# dependencies beyond the basic Maneage software.
+$(ibidir)/cmake-$(cmake-version):
+
+# Import the tarball
+ tarball=cmake-$(cmake-version).tar.lz
$(call import-source, $(cmake-url), $(cmake-checksum))
- # After searching in `bootstrap', I couldn't find `LIBS', only
- # `LDFLAGS'. So the extra libraries are being added to `LDFLAGS',
- # not `LIBS'.
- #
- # On Mac systems, the build complains about `clang' specific
- # features, so we can't use our own GCC build here.
+# After searching in 'bootstrap', I couldn't find 'LIBS', only
+# 'LDFLAGS'. So the extra libraries are being added to 'LDFLAGS', not
+# 'LIBS'.
+#
+# On Mac systems, the build complains about 'clang' specific
+# features, so we can't use our own GCC build here.
if [ x$(on_mac_os) = xyes ]; then
export CC=clang
export CXX=clang++
fi
cd $(ddir)
rm -rf cmake-$(cmake-version)
- tar xf $(tdir)/$$tarball
+ tar -xf $(tdir)/$$tarball
cd cmake-$(cmake-version)
./bootstrap --prefix=$(idir) --system-curl --system-zlib \
--system-bzip2 --system-liblzma --no-qt-gui \
@@ -942,7 +1052,7 @@ $(ibidir)/flex-$(flex-version): $(ibidir)/bison-$(bison-version)
echo "Flex $(flex-version)" > $@
$(ibidir)/gdb-$(gdb-version): $(ibidir)/python-$(python-version)
- tarball=gdb-$(gdb-version).tar.gz
+ tarball=gdb-$(gdb-version).tar.lz
export configure_in_different_directory=1;
$(call import-source, $(gdb-url), $(gdb-checksum))
$(call gbuild, gdb-$(gdb-version),,,V=1 -j$(numthreads))
@@ -956,49 +1066,51 @@ $(ibidir)/ghostscript-$(ghostscript-version): \
$(ibidir)/libtiff-$(libtiff-version) \
$(ibidir)/libpaper-$(libpaper-version)
- # Download the standard collection of Ghostscript fonts.
- tarball=ghostscript-fonts-std-$(ghostscript-fonts-std-version).tar.gz
+# Download the standard collection of Ghostscript fonts.
+ tarball=ghostscript-fonts-std-$(ghostscript-fonts-std-version).tar.lz
$(call import-source, $(ghostscript-fonts-std-url), \
$(ghostscript-fonts-std-checksum))
- # Download the extra GNU fonts for Ghostscript.
- tarball=ghostscript-fonts-gnu-$(ghostscript-fonts-gnu-version).tar.gz
+# Download the extra GNU fonts for Ghostscript.
+ tarball=ghostscript-fonts-gnu-$(ghostscript-fonts-gnu-version).tar.lz
$(call import-source, $(ghostscript-fonts-gnu-url), \
$(ghostscript-fonts-gnu-checksum))
- # Download the tarball
- tarball=ghostscript-$(ghostscript-version).tar.gz
+# Download the tarball
+ tarball=ghostscript-$(ghostscript-version).tar.lz
$(call import-source, $(ghostscript-url), $(ghostscript-checksum))
- # Unpack it and configure Ghostscript.
+# Unpack it and configure Ghostscript. The option
+# '-DPNG_ARM_NEON_OPT=0' prevents an arm64 'neon' library from being
+# required at compile time.
cd $(ddir)
- tar xf $(tdir)/$$tarball
+ tar -xf $(tdir)/$$tarball
cd ghostscript-$(ghostscript-version)
./configure --prefix=$(idir) \
--disable-cups \
--enable-dynamic \
- --with-system-libtiff \
- --disable-compile-inits
+ --disable-compile-inits \
+ CFLAGS="-DPNG_ARM_NEON_OPT=0"
- # Build and install the program and the shared libraries.
+# Build and install the program and the shared libraries.
make V=1 -j$(numthreads)
make so V=1 -j$(numthreads)
make install
make soinstall
- # Install headers and set PostScript (PS) headers to point there.
+# Install headers and set PostScript (PS) headers to point there.
install -v -m644 base/*.h $(iidir)/ghostscript
ln -sfvn $(iidir)/ghostscript $(iidir)/ps
- # Install the fonts.
- tar -xvf $(tdir)/ghostscript-fonts-std-$(ghostscript-fonts-std-version).tar.gz \
+# Install the fonts.
+ tar -xvf $(tdir)/ghostscript-fonts-std-$(ghostscript-fonts-std-version).tar.lz \
-C $(idir)/share/ghostscript
- tar -xvf $(tdir)/ghostscript-fonts-gnu-$(ghostscript-fonts-gnu-version).tar.gz \
+ tar -xvf $(tdir)/ghostscript-fonts-gnu-$(ghostscript-fonts-gnu-version).tar.lz \
-C $(idir)/share/ghostscript
fc-cache -v $(idir)/share/ghostscript/fonts/
echo; echo "Ghostscript fonts added to Fontconfig."; echo;
- # Clean up and write the output target.
+# Clean up and write the output target.
cd ..
rm -rf ghostscript-$(ghostscript-version)
echo "GPL Ghostscript $(ghostscript-version)" > $@
@@ -1018,48 +1130,74 @@ $(ibidir)/gnuastro-$(gnuastro-version): \
echo "GNU Astronomy Utilities $(gnuastro-version) \citep{gnuastro}" > $@
$(ibidir)/help2man-$(help2man-version):
- tarball=help2man-$(help2man-version).tar.xz
+ tarball=help2man-$(help2man-version).tar.lz
$(call import-source, $(help2man-url), $(help2man-checksum))
$(call gbuild, help2man-$(help2man-version), static, ,V=1)
echo "Help2man $(Help2man-version)" > $@
+$(ibidir)/icu-$(icu-version): $(ibidir)/python-$(python-version)
+
+# First, we need to remove any possibly existing ICU installation
+# because it can cause conflicts during a new configuration
+# (especially if a new version is to replace the old one).
+ for i in data i18n io test tu uc; do
+ rm -fv $(ildir)/libicu$$i.*;
+ done
+
+# Prepare the tarball, unpack, build and install ICU (some
+# customizations are necessary, so we're not using 'gbuild').
+ tarball=icu-$(icu-version).tar.lz
+ $(call import-source, $(icu-url), $(icu-checksum))
+ cd $(ddir)
+ tar -xf $(tdir)/$$tarball
+ unpackdir=icu-$(icu-version)
+ cd $$unpackdir/icu4c/source
+ ./configure --enable-static --prefix=$(idir)
+ make -j$(numthreads) V=1
+ make install
+ cd $(ddir)
+ rm -rf $$unpackdir
+ echo "ICU $(icu-version)" > $@
+
$(ibidir)/imagemagick-$(imagemagick-version): \
$(ibidir)/zlib-$(zlib-version) \
$(ibidir)/libjpeg-$(libjpeg-version) \
$(ibidir)/libtiff-$(libtiff-version)
- tarball=imagemagick-$(imagemagick-version).tar.xz
+ tarball=ImageMagick-$(imagemagick-version).tar.lz
$(call import-source, $(imagemagick-url), $(imagemagick-checksum))
$(call gbuild, ImageMagick-$(imagemagick-version), static, \
--without-x --disable-openmp, V=1 -j$(numthreads))
echo "ImageMagick $(imagemagick-version)" > $@
-# `imfit' doesn't use the traditional `configure' and `make' to install
-# itself. Instead of that, it uses `scons'. As a consequence, the
+# 'imfit' doesn't use the traditional 'configure' and 'make' to install
+# itself. Instead of that, it uses 'scons'. As a consequence, the
# installation is manually done by decompressing the tarball, and running
-# `scons' with the necessary flags. Despite of that, it is necessary to
+# 'scons' with the necessary flags. Despite of that, it is necessary to
# replace the default searching paths in this script by our installation
-# paths. This is done with `sed', replacing each ocurrence of `/usr/local'
-# by `$(idir)'. After that, each compiled program (`imfit', `imfit-mcmc'
-# and `makeimage') is copied into the installation directory and an `rpath'
+# paths. This is done with 'sed', replacing each ocurrence of '/usr/local'
+# by '$(idir)'. After that, each compiled program ('imfit', 'imfit-mcmc'
+# and 'makeimage') is copied into the installation directory and an 'rpath'
# is added.
$(ibidir)/imfit-$(imfit-version): \
$(ibidir)/gsl-$(gsl-version) \
$(ibidir)/fftw-$(fftw-version) \
$(ibidir)/scons-$(scons-version) \
$(ibidir)/cfitsio-$(cfitsio-version)
+
+# Prepare the source.
tarball=imfit-$(imfit-version).tar.gz
$(call import-source, $(imfit-url), $(imfit-checksum))
- # If the C library is in a non-standard location.
+# If the C library is in a non-standard location.
if ! [ x$(SYS_CPATH) = x ]; then
headerpath="--header-path=$(SYS_CPATH)"
fi
- # Unpack and build imfit and its accompanying programs.
+# Unpack and build imfit and its accompanying programs.
cd $(ddir)
unpackdir=imfit-$(imfit-version)
rm -rf $$unpackdir
- tar xf $(tdir)/$$tarball
+ tar -xf $(tdir)/$$tarball
cd $$unpackdir
sed -i 's|/usr/local|$(idir)|g' SConstruct
sed -i 's|/usr/include|$(idir)/include|g' SConstruct
@@ -1086,6 +1224,8 @@ $(ibidir)/imfit-$(imfit-version): \
done
fi
cp $(dtexdir)/imfit.tex $(ictdir)/
+ cd ..
+ rm -rf $$unpackdir
echo "Imfit $(imfit-version) \citep{imfit2015}" > $@
# Minizip 1.x is actually distributed within zlib. It doesn't have its own
@@ -1098,13 +1238,13 @@ $(ibidir)/imfit-$(imfit-version): \
# About deleting the final crypt.h file after installation, see
# https://bugzilla.redhat.com/show_bug.cgi?id=1424609
$(ibidir)/minizip-$(minizip-version): $(ibidir)/automake-$(automake-version)
- tarball=zlib-$(zlib-version).tar.gz
- $(call import-source, $(minizip-url), $(minizip-checksum))
+ tarball=zlib-$(zlib-version).tar.lz
+ $(call import-source, $(zlib-url), $(zlib-checksum))
cd $(ddir)
unpackdir=minizip-$(minizip-version)
rm -rf $$unpackdir
mkdir $$unpackdir
- tar xf $(tdir)/$$tarball -C$$unpackdir --strip-components=1
+ tar -xf $(tdir)/$$tarball -C$$unpackdir --strip-components=1
cd $$unpackdir
./configure --prefix=$(idir)
make
@@ -1140,16 +1280,18 @@ $(ibidir)/missfits-$(missfits-version):
# Netpbm is a prerequisite of Astrometry-net, it contains a lot of programs.
# This program has a crazy dialogue installation which is override using the
-# printf statment. Each `\n' is a new question that the installation process
+# printf statment. Each '\n' is a new question that the installation process
# ask to the user. We give all answers with a pipe to the scripts (configure
# and install). The questions are different depending on the system (tested
# on GNU/Linux and Mac OS).
$(ibidir)/netpbm-$(netpbm-version): \
+ $(ibidir)/flex-$(flex-version) \
$(ibidir)/libpng-$(libpng-version) \
+ $(ibidir)/libx11-$(libx11-version) \
$(ibidir)/libjpeg-$(libjpeg-version) \
$(ibidir)/libtiff-$(libtiff-version) \
$(ibidir)/libxml2-$(libxml2-version)
- tarball=netpbm-$(netpbm-version).tar.gz
+ tarball=netpbm-$(netpbm-version).tar.lz
$(call import-source, $(netpbm-url), $(netpbm-checksum))
if [ x$(on_mac_os) = xyes ]; then
answers='\n\n$(ildir)\n\n\n\n\n\n$(ildir)/include\n\n$(ildir)/include\n\n$(ildir)/include\nnone\n\n'
@@ -1159,7 +1301,7 @@ $(ibidir)/netpbm-$(netpbm-version): \
cd $(ddir)
unpackdir=netpbm-$(netpbm-version)
rm -rf $$unpackdir
- tar xf $(tdir)/$$tarball
+ tar -xf $(tdir)/$$tarball
cd $$unpackdir
printf "$$answers" | ./configure
make
@@ -1189,60 +1331,15 @@ $(ibidir)/pcre-$(pcre-version):
, V=1 -j$(numthreads))
echo "Perl Compatible Regular Expressions $(pcre-version)" > $@
-# Comment on building R without GUI support ('--without-tcltlk')
-#
-# Tcl/Tk are a set of tools to provide Graphic User Interface (GUI) support
-# in some software. But they are not yet natively built within Maneage,
-# primarily because we have higher-priority work right now (if anyone is
-# interested, they can ofcourse contribute!). GUI tools in general aren't
-# high on our priority list right now because they are generally good for
-# human interaction (which is contrary to the reproducible philosophy:
-# there will always be human-error and frustration, for example in GUI
-# tools the best level of reproducibility is statements like this: "move
-# your mouse to button XXX, then click on menu YYY and etc"). A robust
-# reproducible solution must be done automatically.
-#
-# If someone wants to use R's GUI functionalities while investigating for
-# their analysis, they can do the GUI part on their host OS
-# implementation. Later, they can bring the finalized source into Maneage
-# to be automatically run in Maneage. This will also be the recommended way
-# to deal with GUI tools later when we do install them within Maneage.
-$(ibidir)/R-$(R-version): \
- $(ibidir)/pcre-$(pcre-version) \
- $(ibidir)/cairo-$(cairo-version) \
- $(ibidir)/libpng-$(libpng-version) \
- $(ibidir)/libjpeg-$(libjpeg-version) \
- $(ibidir)/libtiff-$(libtiff-version) \
- $(ibidir)/libpaper-$(libpaper-version)
- tarball=R-$(R-version).tar.gz
- $(call import-source, $(R-url), $(R-checksum))
- cd $(ddir)
- tar xf $(tdir)/$$tarball
- cd R-$(R-version)
-
- # We need to manually remove the lines with '~autodetect~', they
- # cause the configure script to crash in version 4.0.2. They are
- # used in relation to Java, and we don't use Java anyway.
- sed -i -e '/\~autodetect\~/ s/^/#/g' configure
- export R_SHELL=$(SHELL)
- ./configure --prefix=$(idir) \
- --without-x \
- --with-pcre1 \
- --disable-java \
- --with-readline \
- --without-tcltk \
- --disable-openmp
- make -j$(numthreads)
- make install
- cd ..
- rm -rf R-$(R-version)
- echo "R $(R-version)" > $@
+# 2022-01-01 The rules for building R - identified as r-cran to avoid the
+# difficulties in searching text for a one-letter string - were shifted to
+# 'r-cran.mk'.
# SCAMP documentation says ATLAS is a mandatory prerequisite for using
# SCAMP. We have ATLAS into the project but there are some problems with the
# libraries that are not yet solved. However, we tried to install it with
# the option --enable-openblas and it worked (same issue happened with
-# `sextractor'.
+# 'sextractor'.
$(ibidir)/scamp-$(scamp-version): \
$(ibidir)/fftw-$(fftw-version) \
$(ibidir)/openblas-$(openblas-version) \
@@ -1250,7 +1347,7 @@ $(ibidir)/scamp-$(scamp-version): \
tarball=scamp-$(scamp-version).tar.lz
$(call import-source, $(scamp-url), $(scamp-checksum))
- # See comment above 'missfits' for '-fcommon'.
+# See comment above 'missfits' for '-fcommon'.
$(call gbuild, scamp-$(scamp-version), static, \
CFLAGS="-fcommon" \
--enable-threads \
@@ -1263,17 +1360,19 @@ $(ibidir)/scamp-$(scamp-version): \
cp $(dtexdir)/scamp.tex $(ictdir)/
echo "SCAMP $(scamp-version) \citep{scamp}" > $@
-# Since `scons' doesn't use the traditional GNU installation with
-# `configure' and `make' it is installed manually using `python'.
+# Since 'scons' doesn't use the traditional GNU installation with
+# 'configure' and 'make' it is installed manually using 'python'.
$(ibidir)/scons-$(scons-version): $(ibidir)/python-$(python-version)
tarball=scons-$(scons-version).tar.gz
$(call import-source, $(scons-url), $(scons-checksum))
cd $(ddir)
unpackdir=scons-$(scons-version)
rm -rf $$unpackdir
- tar xf $(tdir)/$$tarball
+ tar -xf $(tdir)/$$tarball
cd $$unpackdir
python setup.py install
+ cd ..
+ rm -rf $$unpackdir
echo "SCons $(scons-version)" > $@
# Sextractor crashes complaining about not linking with some ATLAS
@@ -1289,7 +1388,7 @@ $(ibidir)/sextractor-$(sextractor-version): \
tarball=sextractor-$(sextractor-version).tar.lz
$(call import-source, $(sextractor-url), $(sextractor-checksum))
- # See comment above 'missfits' for '-fcommon'.
+# See comment above 'missfits' for '-fcommon'.
$(call gbuild, sextractor-$(sextractor-version), static, \
CFLAGS="-fcommon" \
--enable-threads \
@@ -1304,7 +1403,7 @@ $(ibidir)/swarp-$(swarp-version): $(ibidir)/fftw-$(fftw-version)
tarball=swarp-$(swarp-version).tar.gz
$(call import-source, $(swarp-url), $(swarp-checksum))
- # See comment above 'missfits' for '-fcommon'.
+# See comment above 'missfits' for '-fcommon'.
$(call gbuild, swarp-$(swarp-version), static, \
CFLAGS="-fcommon" \
--enable-threads)
@@ -1312,10 +1411,11 @@ $(ibidir)/swarp-$(swarp-version): $(ibidir)/fftw-$(fftw-version)
echo "SWarp $(swarp-version) \citep{swarp}" > $@
$(ibidir)/swig-$(swig-version):
- # Option --without-pcre was a suggestion once the configure step
- # was tried and it failed. It was not recommended but it works!
- # pcr is a dependency of swig
- tarball=swig-$(swig-version).tar.gz
+
+# Option --without-pcre was a suggestion once the configure step was
+# tried and it failed. It was not recommended but it works! pcr is a
+# dependency of swig
+ tarball=swig-$(swig-version).tar.lz
$(call import-source, $(swig-url), $(swig-checksum))
$(call gbuild, swig-$(swig-version), static, \
--without-pcre --without-tcl)
@@ -1345,19 +1445,19 @@ $(ibidir)/swig-$(swig-version):
# '$(ibdir)'. If any program does need 'util-linux' libraries, they can
# simply add the proper directories to the environment variables, see
# 'fontconfig' for example.
-$(ibidir)/util-linux-$(util-linux-version):
+$(ibidir)/util-linux-$(util-linux-version): | $(idircustom)
- # Import the source.
- tarball=util-linux-$(util-linux-version).tar.xz
+# Import the source.
+ tarball=util-linux-$(util-linux-version).tar.lz
$(call import-source, $(util-linux-url), $(util-linux-checksum))
- # Unpack the source and set it to install in a special directory
- # (as explained above). As shown below, later, we'll put a symbolic
- # link of all the necessary binaries in the main '$(idir)/bin'.
+# Unpack the source and set it to install in a special directory (as
+# explained above). As shown below, later, we'll put a symbolic link
+# of all the necessary binaries in the main '$(idir)/bin'.
cd $(ddir)
- tar xf $(tdir)/$$tarball
+ tar -xf $(tdir)/$$tarball
cd util-linux-$(util-linux-version)
- ./configure --prefix=$(idir)/util-linux \
+ ./configure --prefix=$(idircustom)/util-linux \
--disable-dependency-tracking \
--disable-silent-rules \
--without-systemd \
@@ -1368,21 +1468,21 @@ $(ibidir)/util-linux-$(util-linux-version):
--disable-wall \
--disable-su
- # Build and install it.
+# Build and install it.
make V=1 -j$(numthreads)
make install
- # Put a symbolic link to installed programs in main installation
- # directory. If 'sbin' exists in the main installation directory,
- # put util-linux's 'sbin/' directory there too.
- ln -sf $(idir)/util-linux/bin/* $(ibdir)/
+# Put a symbolic link to installed programs in main installation
+# directory. If 'sbin' exists in the main installation directory, put
+# util-linux's 'sbin/' directory there too.
+ ln -sf $(idircustom)/util-linux/bin/* $(ibdir)/
if [ -d $(idir)/sbin ]; then
- ln -sf $(idir)/util-linux/sbin/* $(idir)/sbin
+ ln -sf $(idircustom)/util-linux/sbin/* $(idir)/sbin
else
- ln -sf $(idir)/util-linux/sbin/* $(idir)/bin
+ ln -sf $(idircustom)/util-linux/sbin/* $(idir)/bin
fi
- # Clean up and write the main target.
+# Clean up and write the main target.
cd ../
rm -rf util-linux-$(util-linux-version)
echo "util-Linux $(util-linux-version)" > $@
@@ -1428,7 +1528,7 @@ $(ibidir)/vim-$(vim-version):
tarball=vim-$(vim-version).tar.bz2
$(call import-source, $(vim-url), $(vim-checksum))
cd $(ddir)
- tar xf $(tdir)/$$tarball
+ tar -xf $(tdir)/$$tarball
n=$$(echo $(vim-version) | sed -e's|\.||')
cd $(ddir)/vim$$n
./configure --prefix=$(idir) \
@@ -1455,7 +1555,7 @@ $(ibidir)/vim-$(vim-version):
# hard to track for Make (as a target). Also, TeX in general is optional
# for the project (the processing is the main target, not the generation of
# the final PDF). So we'll make a simple ASCII file called
-# `texlive-ready-tlmgr' and use its contents to mark if we can use it or
+# 'texlive-ready-tlmgr' and use its contents to mark if we can use it or
# not.
#
# TeX Live mirror
@@ -1463,8 +1563,8 @@ $(ibidir)/vim-$(vim-version):
#
# The automatic mirror finding fails sometimes. So we'll manually set it to
# use a fixed mirror. I first tried the LaTeX root webpage
-# (`ftp.dante.de'), however, it is far too slow (when I tested it). The
-# `rit.edu' server seems to be a good alternative (given the importance of
+# ('ftp.dante.de'), however, it is far too slow (when I tested it). The
+# 'rit.edu' server seems to be a good alternative (given the importance of
# NY on the internet infrastructure).
texlive-url=http://mirrors.rit.edu/CTAN/systems/texlive/tlnet
$(itidir)/texlive-ready-tlmgr: reproduce/software/config/texlive.conf
@@ -1472,81 +1572,81 @@ $(itidir)/texlive-ready-tlmgr: reproduce/software/config/texlive.conf
tarball=install-tl-unx.tar.gz
$(call import-source, $(texlive-url), NO-CHECK-SUM)
- # Unpack, enter the directory, and install based on the given
- # configuration (prerequisite of this rule).
+# Unpack, enter the directory, and install based on the given
+# configuration (prerequisite of this rule).
@topdir=$$(pwd)
cd $(ddir)
rm -rf install-tl-*
- tar xf $(tdir)/install-tl-unx.tar.gz
+ tar -xf $(tdir)/install-tl-unx.tar.gz
cd install-tl-*
sed -e's|@installdir[@]|$(idir)|g' \
"$$topdir"/reproduce/software/config/texlive.conf \
> texlive.conf
- # TeX Live's installation may fail due to any reason. But TeX Live
- # is optional (only necessary for building the final PDF). So we
- # don't want the configure script to fail if it can't run.
- # Possible error messages will be saved into `log.txt' and if it
- # fails, 'log.txt' will be checked to see if the error is due to
- # the different version of the current tarball and the TeXLive
- # server or something else.
- #
- # The problem with versions is this: each installer tarball (that
- # is downloaded and a user may backup) is for a specific version of
- # TeXLive (specified by year, usually around April). So if a user
- # has an old tarball, but the CTAN server has been updated, the
- # script will fail with a message like this:
- #
- # =============================================================
- # ./install-tl: The TeX Live versions of the local installation
- # and the repository being accessed are not compatible:
- # local: 2019
- # repository: 2020
- # Perhaps you need to use a different CTAN mirror?
- # (For more, see the output of install-tl --help, especially the
- # -repository option. Online via https://tug.org/texlive/doc.)
- # =============================================================
- #
- # To address this problem, when this happens, we simply download a
- # the most recent tarball, and if it succeeds, we will build
- # TeXLive using that. The old tarball will be preserved, but will
- # have an '-OLD' suffix after it.
+# TeX Live's installation may fail due to any reason. But TeX Live is
+# optional (only necessary for building the final PDF). So we don't
+# want the configure script to fail if it can't run. Possible error
+# messages will be saved into 'log.txt' and if it fails, 'log.txt'
+# will be checked to see if the error is due to the different version
+# of the current tarball and the TeXLive server or something else.
+#
+# The problem with versions is this: each installer tarball (that is
+# downloaded and a user may backup) is for a specific version of
+# TeXLive (specified by year, usually around April). So if a user has
+# an old tarball, but the CTAN server has been updated, the script
+# will fail with a message like this:
+#
+# =============================================================
+# ./install-tl: The TeX Live versions of the local installation
+# and the repository being accessed are not compatible:
+# local: 2019
+# repository: 2020
+# Perhaps you need to use a different CTAN mirror?
+# (For more, see the output of install-tl --help, especially the
+# -repository option. Online via https://tug.org/texlive/doc.)
+# =============================================================
+#
+# To address this problem, when this happens, we simply download a
+# the most recent tarball, and if it succeeds, we will build TeXLive
+# using that. The old tarball will be preserved, but will have an
+# '-OLD' suffix after it.
if ./install-tl --profile=texlive.conf -repository \
$(texlive-url) 2> log.txt; then
- # Put a symbolic link of the TeX Live executables in `ibdir' to
- # avoid all the complexities of its sub-directories and additions
- # to PATH.
+# Put a symbolic link of the TeX Live executables in 'ibdir' to
+# avoid all the complexities of its sub-directories and additions
+# to PATH.
ln -fs $(idir)/texlive/maneage/bin/*/* $(ibdir)/
- # Register that the build was successful.
+# Register that the build was successful.
echo "TeX Live is ready." > $@
- # The build failed!
+# The build failed!
else
- # Print on the command line the error messages during the
- # installation.
+# Print on the command line the error messages during the
+# installation.
cat log.txt
- # Look for words `repository:' and `local:' in `log.txt' and make
- # sure that two lines are returned. Note that we need to check
- # for two lines because one of them may exist, but another may
- # not (in this case, its not a version conflict scenario).
+# Look for words 'repository:' and 'local:' in 'log.txt' and make
+# sure that two lines are returned. Note that we need to check for
+# two lines because one of them may exist, but another may not (in
+# this case, its not a version conflict scenario).
version_check=$$(grep -w 'repository:\|local:' log.txt | wc -l)
- # If these words exists and two lines are found, there is a
- # conflict with the main TeXLive version in the tarball and on
- # the server. So it is necessary to move the old tarball and
- # download the new one to install it.
+# If these words exists and two lines are found, there is a
+# conflict with the main TeXLive version in the tarball and on the
+# server. So it is necessary to move the old tarball and download
+# the new one to install it.
if [ x"$$version_check" = x2 ]; then
- # Go back to the top project directory, don't remove the
- # tarball, just rename it.
+
+# Go back to the top project directory, don't remove the tarball,
+# just rename it.
cd $$topdir
mv $(tdir)/install-tl-unx.tar.gz $(tdir)/install-tl-unx-OLD.tar.gz
- # Download using the script specially defined for this job. If
- # the download of new tarball success, install it (same lines
- # than above). If not, record the fail into the target.
+# Download using the script specially defined for this job. If
+# the download of new tarball success, install it (same lines
+# than above). If not, record the fail into the target.
url=http://mirror.ctan.org/systems/texlive/tlnet
tarballurl=$$url/install-tl-unx.tar.gz
touch $(lockdir)/download
@@ -1556,7 +1656,7 @@ $(itidir)/texlive-ready-tlmgr: reproduce/software/config/texlive.conf
"$(backupservers)"; then
cd $(ddir)
rm -rf install-tl-*
- tar xf $(tdir)/install-tl-unx.tar.gz
+ tar -xf $(tdir)/install-tl-unx.tar.gz
cd install-tl-*
sed -e's|@installdir[@]|$(idir)|g' \
$$topdir/reproduce/software/config/texlive.conf \
@@ -1576,7 +1676,7 @@ $(itidir)/texlive-ready-tlmgr: reproduce/software/config/texlive.conf
fi
fi
- # Clean up
+# Clean up
cd ..
rm -rf install-tl-*
@@ -1590,49 +1690,50 @@ $(itidir)/texlive-ready-tlmgr: reproduce/software/config/texlive.conf
#
# Note that Biber needs to link with libraries like libnsl. However, we
# don't currently build biber from source. So we can't choose the library
-# version. But we have the source and build instructions for the `nsl'
+# version. But we have the source and build instructions for the 'nsl'
# library. When we later build biber from source, we can easily use them.
$(itidir)/texlive: reproduce/software/config/texlive-packages.conf \
$(itidir)/texlive-ready-tlmgr
- # To work with TeX live installation, we'll need the internet.
+# To work with TeX live installation, we'll need the internet.
@res=$$(cat $(itidir)/texlive-ready-tlmgr)
if [ x"$$res" = x"NOT!" ]; then
echo "" > $@
else
- # To update itself, tlmgr needs a backup directory.
+
+# To update itself, tlmgr needs a backup directory.
backupdir=$(idir)/texlive/backups
mkdir -p $$backupdir
- # Before checking LaTeX packages, update tlmgr itself.
+# Before checking LaTeX packages, update tlmgr itself.
tlmgr option backupdir $$backupdir
tlmgr -repository $(texlive-url) update --self
- # Install all the extra necessary packages. If LaTeX complains
- # about not finding a command/file/what-ever/XXXXXX, simply run
- # the following command to find which package its in, then add it
- # to the `texlive-packages' variable of the first prerequisite.
- #
- # ./.local/bin/tlmgr info XXXXXX
- #
- # We are putting a notice, because if there is no internet,
- # `tlmgr' just hangs waiting.
+# Install all the extra necessary packages. If LaTeX complains
+# about not finding a command/file/what-ever/XXXXXX, simply run the
+# following command to find which package its in, then add it to
+# the 'texlive-packages' variable of the first prerequisite.
+#
+# ./.local/bin/tlmgr info XXXXXX
+#
+# We are putting a notice, because if there is no internet, 'tlmgr'
+# just hangs waiting.
tlmgr install $(texlive-packages)
- # Make a symbolic link of all the TeX Live executables in the bin
- # directory so we don't have to modify `PATH'.
+# Make a symbolic link of all the TeX Live executables in the bin
+# directory so we don't have to modify 'PATH'.
ln -fs $(idir)/texlive/maneage/bin/*/* $(ibdir)/
- # Get all the necessary versions.
+# Get all the necessary versions.
texlive=$$(pdflatex --version \
| awk 'NR==1' \
| sed 's/.*(\(.*\))/\1/' \
| awk '{print $$NF}');
- # Package names and versions. Note that all TeXLive packages
- # don't have a version unfortunately! So we need to also read the
- # `revision' and `cat-date' elements and print them incase
- # version isn't available.
+# Package names and versions. Note that all TeXLive packages
+# don't have a version unfortunately! So we need to also read the
+# 'revision' and 'cat-date' elements and print them incase
+# version isn't available.
tlmgr info $(texlive-packages) --only-installed | awk \
'$$1=="package:" { \
if(name!=0) \
diff --git a/reproduce/software/make/python.mk b/reproduce/software/make/python.mk
index 18c68de..6766744 100644
--- a/reproduce/software/make/python.mk
+++ b/reproduce/software/make/python.mk
@@ -4,7 +4,7 @@
# !!!!! IMPORTANT NOTES !!!!!
#
# This Makefile will be loaded into 'high-level.mk', which is called by the
-# `./project configure' script. It is not included into the project
+# './project configure' script. It is not included into the project
# afterwards.
#
# This Makefile contains instructions to build all the Python-related
@@ -12,8 +12,8 @@
#
# ------------------------------------------------------------------------
#
-# Copyright (C) 2019-2021 Raul Infante-Sainz <infantesainz@gmail.com>
-# Copyright (C) 2019-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+# Copyright (C) 2019-2022 Raul Infante-Sainz <infantesainz@gmail.com>
+# Copyright (C) 2019-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org>
#
# This Makefile is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
@@ -35,7 +35,7 @@
# Python enviroment
# -----------------
#
-# The main Python environment variable is `PYTHONPATH'. However, so far we
+# The main Python environment variable is 'PYTHONPATH'. However, so far we
# have found several other Python-related environment variables on some
# systems which might interfere. To be safe, we are removing all their
# values.
@@ -62,19 +62,20 @@ python-major-version = $(shell echo $(python-version) | awk 'BEGIN{FS="."} \
# While this Makefile is for Python programs, in some cases, we need
# certain programs (like Python itself), or libraries for the modules.
$(ibidir)/libffi-$(libffi-version):
- # Prepare the source.
- tarball=libffi-$(libffi-version).tar.gz
+
+# Prepare the source.
+ tarball=libffi-$(libffi-version).tar.lz
$(call import-source, $(libffi-url), $(libffi-checksum))
- # Build libffi.
+# Build libffi.
$(call gbuild, libffi-$(libffi-version), , \
CFLAGS="-DNO_JAVA_RAW_API=1")
- # On some Fedora systems, libffi installs in `lib64', not
- # `lib'. This will cause problems when building setuptools
- # later. To fix this problem, we'll first check if this has indeed
- # happened (it exists under `lib64', but not under `lib'). If so,
- # we'll put a copy of the installed libffi libraries in `lib'.
+# On some Fedora systems, libffi installs in 'lib64', not 'lib'. This
+# will cause problems when building setuptools later. To fix this
+# problem, we'll first check if this has indeed happened (it exists
+# under 'lib64', but not under 'lib'). If so, we'll put a copy of the
+# installed libffi libraries in 'lib'.
if [ -f $(idir)/lib64/libffi.a ] && ! [ -f $(idir)/lib/libffi.a ]; then
cp $(idir)/lib64/libffi* $(ildir)/
fi
@@ -82,17 +83,17 @@ $(ibidir)/libffi-$(libffi-version):
$(ibidir)/python-$(python-version): $(ibidir)/libffi-$(libffi-version)
- # Download the source.
- tarball=python-$(python-version).tar.gz
+# Download the source.
+ tarball=python-$(python-version).tar.lz
$(call import-source, $(python-url), $(python-checksum))
- # On Mac systems, the build complains about `clang' specific
- # features, so we can't use our own GCC build here.
+# On Mac systems, the build complains about 'clang' specific
+# features, so we can't use our own GCC build here.
if [ x$(on_mac_os) = xyes ]; then
export CC=clang
export CXX=clang++
fi
- $(call gbuild, Python-$(python-version),, \
+ $(call gbuild, python-$(python-version),, \
--without-ensurepip \
--with-system-ffi \
--enable-shared, -j$(numthreads))
@@ -110,10 +111,10 @@ $(ibidir)/python-$(python-version): $(ibidir)/libffi-$(libffi-version)
# Non-PiP Python module installation
# ----------------------------------
#
-# To build Python packages with direct access to a `setup.py' (if no direct
-# access to `setup.py' is needed, pip can be used). Note that the
+# To build Python packages with direct access to a 'setup.py' (if no direct
+# access to 'setup.py' is needed, pip can be used). Note that the
# software's packaged source code is the first prerequisite that is in the
-# `tdir' directory.
+# 'tdir' directory.
#
# Arguments of this function are the numbers
# 1) Unpack command
@@ -122,8 +123,8 @@ $(ibidir)/python-$(python-version): $(ibidir)/libffi-$(libffi-version)
# 4) Official software name (for paper).
#
# Hooks:
-# pyhook_before: optional steps before running `python setup.py build'
-# pyhook_after: optional steps after running `python setup.py install'
+# pyhook_before: optional steps before running 'python setup.py build'
+# pyhook_after: optional steps after running 'python setup.py install'
pybuild = cd $(ddir); rm -rf $(2); \
if ! $(1) $(tdir)/$$tarball; then \
echo; echo "Tar error"; exit 1; \
@@ -153,13 +154,13 @@ pybuild = cd $(ddir); rm -rf $(2); \
$(ipydir)/asn1crypto-$(asn1crypto-version): $(ipydir)/setuptools-$(setuptools-version)
tarball=asn1crypto-$(asn1crypto-version).tar.gz
$(call import-source, $(asn1crypto-url), $(asn1crypto-checksum))
- $(call pybuild, tar xf, asn1crypto-$(asn1crypto-version), , \
+ $(call pybuild, tar -xf, asn1crypto-$(asn1crypto-version), , \
Asn1crypto $(asn1crypto-version))
$(ipydir)/asteval-$(asteval-version): $(ipydir)/numpy-$(numpy-version)
tarball=asteval-$(asteval-version).tar.gz
$(call import-source, $(asteval-url), $(asteval-checksum))
- $(call pybuild, tar xf, asteval-$(asteval-version), , \
+ $(call pybuild, tar -xf, asteval-$(asteval-version), , \
ASTEVAL $(asteval-version))
$(ipydir)/astroquery-$(astroquery-version): \
@@ -168,7 +169,7 @@ $(ipydir)/astroquery-$(astroquery-version): \
$(ipydir)/requests-$(requests-version)
tarball=astroquery-$(astroquery-version).tar.gz
$(call import-source, $(astroquery-url), $(astroquery-checksum))
- $(call pybuild, tar xf, astroquery-$(astroquery-version), , \
+ $(call pybuild, tar -xf, astroquery-$(astroquery-version), , \
Astroquery $(astroquery-version))
$(ipydir)/astropy-$(astropy-version): \
@@ -177,87 +178,84 @@ $(ipydir)/astropy-$(astropy-version): \
$(ipydir)/scipy-$(scipy-version) \
$(ipydir)/numpy-$(numpy-version) \
$(ipydir)/pyyaml-$(pyyaml-version) \
+ $(ipydir)/jinja2-$(jinja2-version) \
+ $(ipydir)/pyerfa-$(pyerfa-version) \
$(ipydir)/html5lib-$(html5lib-version) \
- $(ipydir)/beautifulsoup4-$(beautifulsoup4-version)
-
- # Download the source.
- tarball=astropy-$(astropy-version).tar.gz
+ $(ipydir)/beautifulsoup4-$(beautifulsoup4-version) \
+ $(ipydir)/extension-helpers-$(extension-helpers-version)
+ tarball=astropy-$(astropy-version).tar.lz
$(call import-source, $(astropy-url), $(astropy-checksum))
-
- # Currently, when the Expat library is already built in a project
- # (for example as a dependency of another program), Astropy's
- # internal building of Expat will conflict with the project's. So
- # we have added Expat as a dependency of Astropy (so it is always
- # built before it, and we tell Astropy to use the project's
- # libexpat.
- pyhook_before () {
- echo "" >> setup.cfg
- echo "[build]" >> setup.cfg
- echo "use_system_expat=1" >> setup.cfg
- }
- $(call pybuild, tar xf, astropy-$(astropy-version))
+ $(call pybuild, tar -xf, astropy-$(astropy-version))
cp $(dtexdir)/astropy.tex $(ictdir)/
echo "Astropy $(astropy-version) \citep{astropy2013,astropy2018}" > $@
$(ipydir)/beautifulsoup4-$(beautifulsoup4-version): \
$(ipydir)/soupsieve-$(soupsieve-version)
- tarball=beautifulsoup4-$(beautifulsoup4-version).tar.gz
+ tarball=beautifulsoup4-$(beautifulsoup4-version).tar.lz
$(call import-source, $(beautifulsoup4-url), $(beautifulsoup4-checksum))
- $(call pybuild, tar xf, beautifulsoup4-$(beautifulsoup4-version), , \
+ $(call pybuild, tar -xf, beautifulsoup4-$(beautifulsoup4-version), , \
BeautifulSoup $(beautifulsoup4-version))
+$(ipydir)/beniget-$(beniget-version): $(ipydir)/setuptools-$(setuptools-version)
+ tarball=beniget-$(beniget-version).tar.lz
+ $(call import-source, $(beniget-url), $(beniget-checksum))
+ $(call pybuild, tar -xf, beniget-$(beniget-version), , \
+ Beniget $(beniget-version))
+
$(ipydir)/certifi-$(certifi-version): $(ipydir)/setuptools-$(setuptools-version)
tarball=certifi-$(certifi-version).tar.gz
$(call import-source, $(certifi-url), $(certifi-checksum))
- $(call pybuild, tar xf, certifi-$(certifi-version), , \
+ $(call pybuild, tar -xf, certifi-$(certifi-version), , \
Certifi $(certifi-version))
$(ipydir)/cffi-$(cffi-version): \
$(ibidir)/libffi-$(libffi-version) \
$(ipydir)/pycparser-$(pycparser-version)
- tarball=cffi-$(cffi-version).tar.gz
+ tarball=cffi-$(cffi-version).tar.lz
$(call import-source, $(cffi-url), $(cffi-checksum))
- $(call pybuild, tar xf, cffi-$(cffi-version), ,cffi $(cffi-version))
+ $(call pybuild, tar -xf, cffi-$(cffi-version), ,cffi $(cffi-version))
$(ipydir)/chardet-$(chardet-version): $(ipydir)/setuptools-$(setuptools-version)
tarball=chardet-$(chardet-version).tar.gz
$(call import-source, $(chardet-url), $(chardet-checksum))
- $(call pybuild, tar xf, chardet-$(chardet-version), , \
+ $(call pybuild, tar -xf, chardet-$(chardet-version), , \
Chardet $(chardet-version))
$(ipydir)/corner-$(corner-version): $(ipydir)/matplotlib-$(matplotlib-version)
tarball=corner-$(corner-version).tar.gz
$(call import-source, $(corner-url), $(corner-checksum))
- $(call pybuild, tar xf, corner-$(corner-version), , \
+ $(call pybuild, tar -xf, corner-$(corner-version), , \
Corner $(corner-version))
cp $(dtexdir)/corner.tex $(ictdir)/
echo "Corner $(corner-version) \citep{corner}" > $@
$(ipydir)/cryptography-$(cryptography-version): \
$(ipydir)/cffi-$(cffi-version) \
- $(ipydir)/asn1crypto-$(asn1crypto-version)
- tarball=cryptography-$(cryptography-version).tar.gz
+ $(ipydir)/asn1crypto-$(asn1crypto-version) \
+ $(ipydir)/setuptools-rust-$(setuptools-rust-version)
+ tarball=cryptography-$(cryptography-version).tar.lz
$(call import-source, $(cryptography-url), $(cryptography-checksum))
- $(call pybuild, tar xf, cryptography-$(cryptography-version), , \
+ $(call pybuild, tar -xf, cryptography-$(cryptography-version), , \
Cryptography $(cryptography-version))
$(ipydir)/cycler-$(cycler-version): $(ipydir)/six-$(six-version)
- tarball=cycler-$(cycler-version).tar.gz
+ tarball=cycler-$(cycler-version).tar.lz
$(call import-source, $(cycler-url), $(cycler-checksum))
- $(call pybuild, tar xf, cycler-$(cycler-version), , \
+ $(call pybuild, tar -xf, cycler-$(cycler-version), , \
Cycler $(cycler-version))
$(ipydir)/cython-$(cython-version): $(ipydir)/setuptools-$(setuptools-version)
- tarball=cython-$(cython-version).tar.gz
+ tarball=Cython-$(cython-version).tar.lz
$(call import-source, $(cython-url), $(cython-checksum))
- $(call pybuild, tar xf, Cython-$(cython-version))
+ $(call pybuild, tar -xf, Cython-$(cython-version))
cp $(dtexdir)/cython.tex $(ictdir)/
echo "Cython $(cython-version) \citep{cython2011}" > $@
$(ipydir)/esutil-$(esutil-version): $(ipydir)/numpy-$(numpy-version)
- tarball=esutil-$(esutil-version).tar.gz
+ export CFLAGS="-std=c++14 $$CFLAGS"
+ tarball=esutil-$(esutil-version).tar.lz
$(call import-source, $(esutil-url), $(esutil-checksum))
- $(call pybuild, tar xf, esutil-$(esutil-version), , \
+ $(call pybuild, tar -xf, esutil-$(esutil-version), , \
esutil $(esutil-version))
$(ipydir)/eigency-$(eigency-version): \
@@ -266,7 +264,7 @@ $(ipydir)/eigency-$(eigency-version): \
$(ipydir)/cython-$(cython-version)
tarball=eigency-$(eigency-version).tar.gz
$(call import-source, $(eigency-url), $(eigency-checksum))
- $(call pybuild, tar xf, eigency-$(eigency-version), , \
+ $(call pybuild, tar -xf, eigency-$(eigency-version), , \
eigency $(eigency-version))
$(ipydir)/emcee-$(emcee-version): \
@@ -274,28 +272,35 @@ $(ipydir)/emcee-$(emcee-version): \
$(ipydir)/setuptools_scm-$(setuptools_scm-version)
tarball=emcee-$(emcee-version).tar.gz
$(call import-source, $(emcee-url), $(emcee-checksum))
- $(call pybuild, tar xf, emcee-$(emcee-version), , \
+ $(call pybuild, tar -xf, emcee-$(emcee-version), , \
emcee $(emcee-version))
$(ipydir)/entrypoints-$(entrypoints-version): \
$(ipydir)/setuptools-$(setuptools-version)
tarball=entrypoints-$(entrypoints-version).tar.gz
$(call import-source, $(entrypoints-url), $(entrypoints-checksum))
- $(call pybuild, tar xf, entrypoints-$(entrypoints-version), , \
+ $(call pybuild, tar -xf, entrypoints-$(entrypoints-version), , \
EntryPoints $(entrypoints-version))
+$(ipydir)/extension-helpers-$(extension-helpers-version): \
+ $(ipydir)/setuptools-$(setuptools-version)
+ tarball=extension-helpers-$(extension-helpers-version).tar.lz
+ $(call import-source, $(extension-helpers-url), $(extension-helpers-checksum))
+ $(call pybuild, tar -xf, extension-helpers-$(extension-helpers-version), , \
+ Extension-Helpers $(extension-helpers-version))
+
$(ipydir)/flake8-$(flake8-version): \
$(ipydir)/pyflakes-$(pyflakes-version) \
$(ipydir)/pycodestyle-$(pycodestyle-version)
tarball=flake8-$(flake8-version).tar.gz
$(call import-source, $(flake8-url), $(flake8-checksum))
- $(call pybuild, tar xf, flake8-$(flake8-version), , \
+ $(call pybuild, tar -xf, flake8-$(flake8-version), , \
Flake8 $(flake8-version))
$(ipydir)/future-$(future-version): $(ipydir)/setuptools-$(setuptools-version)
tarball=future-$(future-version).tar.gz
$(call import-source, $(future-url), $(future-checksum))
- $(call pybuild, tar xf, future-$(future-version), , \
+ $(call pybuild, tar -xf, future-$(future-version), , \
Future $(future-version))
$(ipydir)/galsim-$(galsim-version): \
@@ -304,12 +309,18 @@ $(ipydir)/galsim-$(galsim-version): \
$(ipydir)/eigency-$(eigency-version) \
$(ipydir)/pybind11-$(pybind11-version) \
$(ipydir)/lsstdesccoord-$(lsstdesccoord-version)
- tarball=galsim-$(galsim-version).tar.gz
+ tarball=galsim-$(galsim-version).tar.lz
$(call import-source, $(galsim-url), $(galsim-checksum))
- $(call pybuild, tar xf, GalSim-$(galsim-version))
+ $(call pybuild, tar -xf, galsim-$(galsim-version))
cp $(dtexdir)/galsim.tex $(ictdir)/
echo "Galsim $(galsim-version) \citep{galsim}" > $@
+$(ipydir)/gast-$(gast-version): $(ipydir)/setuptools-$(setuptools-version)
+ tarball=gast-$(gast-version).tar.lz
+ $(call import-source, $(gast-url), $(gast-checksum))
+ $(call pybuild, tar -xf, gast-$(gast-version), , \
+ Gast $(gast-version))
+
$(ipydir)/h5py-$(h5py-version): \
$(ipydir)/six-$(six-version) \
$(ibidir)/hdf5-$(hdf5-version) \
@@ -321,15 +332,15 @@ $(ipydir)/h5py-$(h5py-version): \
export HDF5_DIR=$(ildir)
tarball=h5py-$(h5py-version).tar.gz
$(call import-source, $(h5py-url), $(h5py-checksum))
- $(call pybuild, tar xf, h5py-$(h5py-version), , \
+ $(call pybuild, tar -xf, h5py-$(h5py-version), , \
h5py $(h5py-version))
-# `healpy' is actually installed as part of the HEALPix package. It will be
+# 'healpy' is actually installed as part of the HEALPix package. It will be
# installed with its C/C++ libraries if any other Python library is
-# requested with HEALPix. So actually calling for `healpix' (when `healpix'
+# requested with HEALPix. So actually calling for 'healpix' (when 'healpix'
# is requested) is not necessary. But some users might not know about this
-# and just ask for `healpy'. To avoid confusion in such cases, we'll just
-# set `healpy' to be dependent on `healpix' and not download any tarball
+# and just ask for 'healpy'. To avoid confusion in such cases, we'll just
+# set 'healpy' to be dependent on 'healpix' and not download any tarball
# for it, or write anything in the final target.
$(ipydir)/healpy-$(healpy-version): $(ibidir)/healpix-$(healpix-version)
touch $@
@@ -339,34 +350,40 @@ $(ipydir)/html5lib-$(html5lib-version): \
$(ipydir)/webencodings-$(webencodings-version)
tarball=html5lib-$(html5lib-version).tar.gz
$(call import-source, $(html5lib-url), $(html5lib-checksum))
- $(call pybuild, tar xf, html5lib-$(html5lib-version), , \
+ $(call pybuild, tar -xf, html5lib-$(html5lib-version), , \
HTML5lib $(html5lib-version))
$(ipydir)/idna-$(idna-version): $(ipydir)/setuptools-$(setuptools-version)
tarball=idna-$(idna-version).tar.gz
$(call import-source, $(idna-url), $(idna-checksum))
- $(call pybuild, tar xf, idna-$(idna-version), , \
+ $(call pybuild, tar -xf, idna-$(idna-version), , \
idna $(idna-version))
$(ipydir)/jeepney-$(jeepney-version): $(ipydir)/setuptools-$(setuptools-version)
tarball=jeepney-$(jeepney-version).tar.gz
$(call import-source, $(jeepney-url), $(jeepney-checksum))
- $(call pybuild, tar xf, jeepney-$(jeepney-version), , \
+ $(call pybuild, tar -xf, jeepney-$(jeepney-version), , \
Jeepney $(jeepney-version))
+$(ipydir)/jinja2-$(jinja2-version): $(ipydir)/markupsafe-$(markupsafe-version)
+ tarball=jinja2-$(jinja2-version).tar.lz
+ $(call import-source, $(jinja2-url), $(jinja2-checksum))
+ $(call pybuild, tar -xf, jinja2-$(jinja2-version), , \
+ Jinja2 $(jinja2-version))
+
$(ipydir)/keyring-$(keyring-version): \
$(ipydir)/entrypoints-$(entrypoints-version) \
$(ipydir)/secretstorage-$(secretstorage-version) \
$(ipydir)/setuptools_scm-$(setuptools_scm-version)
tarball=keyring-$(keyring-version).tar.gz
$(call import-source, $(keyring-url), $(keyring-checksum))
- $(call pybuild, tar xf, keyring-$(keyring-version), , \
+ $(call pybuild, tar -xf, keyring-$(keyring-version), , \
Keyring $(keyring-version))
$(ipydir)/kiwisolver-$(kiwisolver-version): $(ipydir)/setuptools-$(setuptools-version)
- tarball=kiwisolver-$(kiwisolver-version).tar.gz
+ tarball=kiwisolver-$(kiwisolver-version).tar.lz
$(call import-source, $(kiwisolver-url), $(kiwisolver-checksum))
- $(call pybuild, tar xf, kiwisolver-$(kiwisolver-version), , \
+ $(call pybuild, tar -xf, kiwisolver-$(kiwisolver-version), , \
Kiwisolver $(kiwisolver-version))
$(ipydir)/lmfit-$(lmfit-version): \
@@ -379,20 +396,28 @@ $(ipydir)/lmfit-$(lmfit-version): \
$(ipydir)/uncertainties-$(uncertainties-version)
tarball=lmfit-$(lmfit-version).tar.gz
$(call import-source, $(lmfit-url), $(lmfit-checksum))
- $(call pybuild, tar xf, lmfit-$(lmfit-version), , \
+ $(call pybuild, tar -xf, lmfit-$(lmfit-version), , \
LMFIT $(lmfit-version))
$(ipydir)/lsstdesccoord-$(lsstdesccoord-version): \
- $(ipydir)/setuptools-$(setuptools-version)
+ $(ipydir)/cython-$(cython-version)
tarball=lsstdesccoord-$(lsstdesccoord-version).tar.gz
$(call import-source, $(lsstdesccoord-url), $(lsstdesccoord-checksum))
- $(call pybuild, tar xf, LSSTDESC.Coord-$(lsstdesccoord-version), , \
+ $(call pybuild, tar -xf, LSSTDESC.Coord-$(lsstdesccoord-version), , \
LSSTDESC.Coord $(lsstdesccoord-version))
+$(ipydir)/markupsafe-$(markupsafe-version): \
+ $(ipydir)/setuptools-$(setuptools-version)
+ tarball=markupsafe-$(markupsafe-version).tar.lz
+ $(call import-source, $(markupsafe-url), $(markupsafe-checksum))
+ $(call pybuild, tar -xf, markupsafe-$(markupsafe-version), , \
+ MarkupSafe $(markupsafe-version))
+
$(ipydir)/matplotlib-$(matplotlib-version): \
$(itidir)/texlive \
$(ipydir)/numpy-$(numpy-version) \
$(ipydir)/cycler-$(cycler-version) \
+ $(ipydir)/pillow-$(pillow-version) \
$(ibidir)/freetype-$(freetype-version) \
$(ipydir)/pyparsing-$(pyparsing-version) \
$(ipydir)/kiwisolver-$(kiwisolver-version) \
@@ -400,33 +425,33 @@ $(ipydir)/matplotlib-$(matplotlib-version): \
$(ibidir)/imagemagick-$(imagemagick-version) \
$(ipydir)/python-dateutil-$(python-dateutil-version)
- # Download the source.
- tarball=matplotlib-$(matplotlib-version).tar.gz
+# Prepare the source.
+ tarball=matplotlib-$(matplotlib-version).tar.lz
$(call import-source, $(matplotlib-url), $(matplotlib-checksum))
- # On Mac systems, the build complains about `clang' specific
- # features, so we can't use our own GCC build here.
+# On Mac systems, the build complains about 'clang' specific
+# features, so we can't use our own GCC build here.
if [ x$(on_mac_os) = xyes ]; then
export CC=clang
export CXX=clang++
fi
- $(call pybuild, tar xf, matplotlib-$(matplotlib-version))
+ $(call pybuild, tar -xf, matplotlib-$(matplotlib-version))
cp $(dtexdir)/matplotlib.tex $(ictdir)/
echo "Matplotlib $(matplotlib-version) \citep{matplotlib2007}" > $@
$(ipydir)/mpi4py-$(mpi4py-version): \
$(ibidir)/openmpi-$(openmpi-version) \
$(ipydir)/setuptools-$(setuptools-version)
- tarball=mpi4py-$(mpi4py-version).tar.gz
+ tarball=mpi4py-$(mpi4py-version).tar.lz
$(call import-source, $(mpi4py-url), $(mpi4py-checksum))
- $(call pybuild, tar xf, mpi4py-$(mpi4py-version))
+ $(call pybuild, tar -xf, mpi4py-$(mpi4py-version))
cp $(dtexdir)/mpi4py.tex $(ictdir)/
echo "mpi4py $(mpi4py-version) \citep{mpi4py2011}" > $@
$(ipydir)/mpmath-$(mpmath-version): $(ipydir)/setuptools-$(setuptools-version)
tarball=mpmath-$(mpmath-version).tar.gz
$(call import-source, $(mpmath-url), $(mpmath-checksum))
- $(call pybuild, tar xf, mpmath-$(mpmath-version), , \
+ $(call pybuild, tar -xf, mpmath-$(mpmath-version), , \
mpmath $(mpmath-version))
$(ipydir)/numpy-$(numpy-version): \
@@ -434,7 +459,7 @@ $(ipydir)/numpy-$(numpy-version): \
$(ipydir)/cython-$(cython-version) \
$(ibidir)/openblas-$(openblas-version) \
$(ipydir)/setuptools-$(setuptools-version)
- tarball=numpy-$(numpy-version).zip
+ tarball=numpy-$(numpy-version).tar.lz
$(call import-source, $(numpy-url), $(numpy-checksum))
if [ x$(on_mac_os) = xyes ]; then
export LDFLAGS="$(LDFLAGS) -undefined dynamic_lookup -bundle"
@@ -443,28 +468,48 @@ $(ipydir)/numpy-$(numpy-version): \
fi
export CFLAGS="--std=c99 $$CFLAGS"
conf="$$(pwd)/reproduce/software/config/numpy-scipy.cfg"
- $(call pybuild, unzip, numpy-$(numpy-version),$$conf, \
+ $(call pybuild, tar -xf, numpy-$(numpy-version),$$conf, \
Numpy $(numpy-version))
cp $(dtexdir)/numpy.tex $(ictdir)/
echo "Numpy $(numpy-version) \citep{numpy2011}" > $@
+$(ipydir)/packaging-$(packaging-version): \
+ $(ipydir)/pyparsing-$(pyparsing-version)
+ tarball=packaging-$(packaging-version).tar.lz
+ $(call import-source, $(packaging-url), $(packaging-checksum))
+ $(call pybuild, tar -xf, packaging-$(packaging-version), , \
+ Packaging $(packaging-version))
+
$(ipydir)/pexpect-$(pexpect-version): $(ipydir)/setuptools-$(setuptools-version)
tarball=pexpect-$(pexpect-version).tar.gz
$(call import-source, $(pexpect-url), $(pexpect-checksum))
- $(call pybuild, tar xf, pexpect-$(pexpect-version), , \
+ $(call pybuild, tar -xf, pexpect-$(pexpect-version), , \
Pexpect $(pexpect-version))
+$(ipydir)/pillow-$(pillow-version): $(ibidir)/libjpeg-$(libjpeg-version) \
+ $(ipydir)/setuptools-$(setuptools-version)
+ tarball=Pillow-$(pillow-version).tar.lz
+ $(call import-source, $(pillow-url), $(pillow-checksum))
+ $(call pybuild, tar -xf, Pillow-$(pillow-version), , \
+ Pillow $(pillow-version))
+
$(ipydir)/pip-$(pip-version): $(ipydir)/setuptools-$(setuptools-version)
tarball=pip-$(pip-version).tar.gz
$(call import-source, $(pip-url), $(pip-checksum))
- $(call pybuild, tar xf, pip-$(pip-version), , \
+ $(call pybuild, tar -xf, pip-$(pip-version), , \
PiP $(pip-version))
+$(ipydir)/ply-$(ply-version): $(ipydir)/setuptools-$(setuptools-version)
+ tarball=ply-$(ply-version).tar.lz
+ $(call import-source, $(ply-url), $(ply-checksum))
+ $(call pybuild, tar -xf, ply-$(ply-version), , \
+ ply $(ply-version))
+
$(ipydir)/pycodestyle-$(pycodestyle-version): \
$(ipydir)/setuptools-$(setuptools-version)
tarball=pycodestyle-$(pycodestyle-version).tar.gz
$(call import-source, $(pycodestyle-url), $(pycodestyle-checksum))
- $(call pybuild, tar xf, pycodestyle-$(pycodestyle-version), , \
+ $(call pybuild, tar -xf, pycodestyle-$(pycodestyle-version), , \
pycodestyle $(pycodestyle-version))
$(ipydir)/pybind11-$(pybind11-version): \
@@ -476,31 +521,40 @@ $(ipydir)/pybind11-$(pybind11-version): \
pyhook_after() {
cp -r include/pybind11 $(iidir)/python$(python-major-version)m/
}
- $(call pybuild, tar xf, pybind11-$(pybind11-version), , \
+ $(call pybuild, tar -xf, pybind11-$(pybind11-version), , \
pybind11 $(pybind11-version))
$(ipydir)/pycparser-$(pycparser-version): $(ipydir)/setuptools-$(setuptools-version)
tarball=pycparser-$(pycparser-version).tar.gz
$(call import-source, $(pycparser-url), $(pycparser-checksum))
- $(call pybuild, tar xf, pycparser-$(pycparser-version), , \
+ $(call pybuild, tar -xf, pycparser-$(pycparser-version), , \
pycparser $(pycparser-version))
+$(ipydir)/pyerfa-$(pyerfa-version): \
+ $(ipydir)/numpy-$(numpy-version) \
+ $(ipydir)/packaging-$(packaging-version)
+ tarball=pyerfa-$(pyerfa-version).tar.lz
+ $(call import-source, $(pyerfa-url), $(pyerfa-checksum))
+ $(call pybuild, tar -xf, pyerfa-$(pyerfa-version), , \
+ PyERFA $(pyerfa-version))
+
$(ipydir)/pyflakes-$(pyflakes-version): $(ipydir)/setuptools-$(setuptools-version)
tarball=pyflakes-$(pyflakes-version).tar.gz
$(call import-source, $(pyflakes-url), $(pyflakes-checksum))
- $(call pybuild, tar xf, pyflakes-$(pyflakes-version), , \
+ $(call pybuild, tar -xf, pyflakes-$(pyflakes-version), , \
pyflakes $(pyflakes-version))
-$(ipydir)/pyparsing-$(pyparsing-version): $(ipydir)/setuptools-$(setuptools-version)
- tarball=pyparsing-$(pyparsing-version).tar.gz
+$(ipydir)/pyparsing-$(pyparsing-version): \
+ $(ipydir)/setuptools-$(setuptools-version)
+ tarball=pyparsing-$(pyparsing-version).tar.lz
$(call import-source, $(pyparsing-url), $(pyparsing-checksum))
- $(call pybuild, tar xf, pyparsing-$(pyparsing-version), , \
+ $(call pybuild, tar -xf, pyparsing-$(pyparsing-version), , \
PyParsing $(pyparsing-version))
$(ipydir)/pypkgconfig-$(pypkgconfig-version): $(ipydir)/setuptools-$(setuptools-version)
tarball=pkgconfig-$(pypkgconfig-version).tar.gz
$(call import-source, $(pypkgconfig-url), $(pypkgconfig-checksum))
- $(call pybuild, tar xf, pkgconfig-$(pypkgconfig-version), ,
+ $(call pybuild, tar -xf, pkgconfig-$(pypkgconfig-version), ,
pkgconfig $(pypkgconfig-version))
$(ipydir)/python-dateutil-$(python-dateutil-version): \
@@ -508,15 +562,26 @@ $(ipydir)/python-dateutil-$(python-dateutil-version): \
$(ipydir)/setuptools_scm-$(setuptools_scm-version)
tarball=python-dateutil-$(python-dateutil-version).tar.gz
$(call import-source, $(python-dateutil-url), $(python-dateutil-checksum))
- $(call pybuild, tar xf, python-dateutil-$(python-dateutil-version), , \
+ $(call pybuild, tar -xf, python-dateutil-$(python-dateutil-version), , \
python-dateutil $(python-dateutil-version))
+$(ipydir)/pythran-$(pythran-version): \
+ $(ipydir)/ply-$(ply-version) \
+ $(ipydir)/gast-$(gast-version) \
+ $(ibidir)/boost-$(boost-version) \
+ $(ipydir)/beniget-$(beniget-version) \
+ $(ipydir)/setuptools_scm-$(setuptools_scm-version)
+ tarball=pythran-$(pythran-version).tar.lz
+ $(call import-source, $(pythran-url), $(pythran-checksum))
+ $(call pybuild, tar -xf, pythran-$(pythran-version), , \
+ pythran $(pythran-version))
+
$(ipydir)/pyyaml-$(pyyaml-version): \
$(ibidir)/yaml-$(yaml-version) \
$(ipydir)/cython-$(cython-version)
tarball=pyyaml-$(pyyaml-version).tar.gz
$(call import-source, $(pyyaml-url), $(pyyaml-checksum))
- $(call pybuild, tar xf, PyYAML-$(pyyaml-version), , \
+ $(call pybuild, tar -xf, PyYAML-$(pyyaml-version), , \
PyYAML $(pyyaml-version))
$(ipydir)/requests-$(requests-version): $(ipydir)/idna-$(idna-version) \
@@ -526,13 +591,14 @@ $(ipydir)/requests-$(requests-version): $(ipydir)/idna-$(idna-version) \
$(ipydir)/urllib3-$(urllib3-version)
tarball=requests-$(requests-version).tar.gz
$(call import-source, $(requests-url), $(requests-checksum))
- $(call pybuild, tar xf, requests-$(requests-version), , \
+ $(call pybuild, tar -xf, requests-$(requests-version), , \
Requests $(requests-version))
$(ipydir)/scipy-$(scipy-version): \
$(ipydir)/numpy-$(numpy-version) \
+ $(ipydir)/pythran-$(pythran-version) \
$(ipydir)/pybind11-$(pybind11-version)
- tarball=scipy-$(scipy-version).tar.gz
+ tarball=scipy-$(scipy-version).tar.lz
$(call import-source, $(scipy-url), $(scipy-checksum))
if [ x$(on_mac_os) = xyes ]; then
export LDFLAGS="$(LDFLAGS) -undefined dynamic_lookup -bundle"
@@ -540,7 +606,7 @@ $(ipydir)/scipy-$(scipy-version): \
export LDFLAGS="$(LDFLAGS) -shared"
fi
conf="$$(pwd)/reproduce/software/config/numpy-scipy.cfg"
- $(call pybuild, tar xf, scipy-$(scipy-version),$$conf)
+ $(call pybuild, tar -xf, scipy-$(scipy-version),$$conf)
cp $(dtexdir)/scipy.tex $(ictdir)/
echo "Scipy $(scipy-version) \citep{scipy2007,scipy2011}" > $@
@@ -549,68 +615,81 @@ $(ipydir)/secretstorage-$(secretstorage-version): \
$(ipydir)/cryptography-$(cryptography-version)
tarball=secretstorage-$(secretstorage-version).tar.gz
$(call import-source, $(secretstorage-url), $(secretstorage-checksum))
- $(call pybuild, tar xf, SecretStorage-$(secretstorage-version), , \
+ $(call pybuild, tar -xf, SecretStorage-$(secretstorage-version), , \
SecretStorage $(secretstorage-version))
$(ipydir)/setuptools-$(setuptools-version): \
$(ibidir)/unzip-$(unzip-version) \
$(ibidir)/python-$(python-version)
- tarball=setuptools-$(setuptools-version).zip
+ tarball=setuptools-$(setuptools-version).tar.lz
$(call import-source, $(setuptools-url), $(setuptools-checksum))
- $(call pybuild, unzip, setuptools-$(setuptools-version), , \
+ $(call pybuild, tar -xf, setuptools-$(setuptools-version), , \
Setuptools $(setuptools-version))
$(ipydir)/setuptools_scm-$(setuptools_scm-version): \
$(ipydir)/setuptools-$(setuptools-version)
tarball=setuptools_scm-$(setuptools_scm-version).tar.gz
$(call import-source, $(setuptools_scm-url), $(setuptools_scm-checksum))
- $(call pybuild, tar xf, setuptools_scm-$(setuptools_scm-version), , \
+ $(call pybuild, tar -xf, setuptools_scm-$(setuptools_scm-version), , \
Setuptools-scm $(setuptools_scm-version))
+$(ipydir)/setuptools-rust-$(setuptools-rust-version): \
+ $(ipydir)/setuptools-$(setuptools-version)
+ tarball=setuptools-rust-$(setuptools-rust-version).tar.lz
+ $(call import-source, $(setuptools-rust-url), $(setuptools-rust-checksum))
+ $(call pybuild, tar -xf, setuptools-rust-$(setuptools-rust-version), , \
+ Setuptools-scm $(setuptools-rust-version))
+
$(ipydir)/sip_tpv-$(sip_tpv-version): \
$(ipydir)/sympy-$(sympy-version) \
$(ipydir)/astropy-$(astropy-version)
tarball=sip_tpv-$(sip_tpv-version).tar.gz
$(call import-source, $(sip_tpv-url), $(sip_tpv-checksum))
- $(call pybuild, tar xf, sip_tpv-$(sip_tpv-version), ,)
+ $(call pybuild, tar -xf, sip_tpv-$(sip_tpv-version), ,)
cp $(dtexdir)/sip_tpv.tex $(ictdir)/
echo "sip_tpv $(sip_tpv-version) \citep{sip-tpv}" > $@
$(ipydir)/six-$(six-version): $(ipydir)/setuptools-$(setuptools-version)
- tarball=six-$(six-version).tar.gz
+ tarball=six-$(six-version).tar.lz
$(call import-source, $(six-url), $(six-checksum))
- $(call pybuild, tar xf, six-$(six-version), , \
+ $(call pybuild, tar -xf, six-$(six-version), , \
Six $(six-version))
$(ipydir)/soupsieve-$(soupsieve-version): $(ipydir)/setuptools-$(setuptools-version)
tarball=soupsieve-$(soupsieve-version).tar.gz
$(call import-source, $(soupsieve-url), $(soupsieve-checksum))
- $(call pybuild, tar xf, soupsieve-$(soupsieve-version), , \
+ $(call pybuild, tar -xf, soupsieve-$(soupsieve-version), , \
SoupSieve $(soupsieve-version))
$(ipydir)/sympy-$(sympy-version): $(ipydir)/mpmath-$(mpmath-version)
tarball=sympy-$(sympy-version).tar.gz
$(call import-source, $(sympy-url), $(sympy-checksum))
- $(call pybuild, tar xf, sympy-$(sympy-version), ,)
+ $(call pybuild, tar -xf, sympy-$(sympy-version), ,)
cp $(dtexdir)/sympy.tex $(ictdir)/
echo "SymPy $(sympy-version) \citep{sympy}" > $@
$(ipydir)/uncertainties-$(uncertainties-version): $(ipydir)/numpy-$(numpy-version)
- tarball=uncertainties-$(uncertainties-version).tar.gz
+ tarball=uncertainties-$(uncertainties-version).tar.lz
$(call import-source, $(uncertainties-url), $(uncertainties-checksum))
- $(call pybuild, tar xf, uncertainties-$(uncertainties-version), , \
+ $(call pybuild, tar -xf, uncertainties-$(uncertainties-version), , \
uncertainties $(uncertainties-version))
$(ipydir)/urllib3-$(urllib3-version): $(ipydir)/setuptools-$(setuptools-version)
tarball=urllib3-$(urllib3-version).tar.gz
$(call import-source, $(urllib3-url), $(urllib3-checksum))
- $(call pybuild, tar xf, urllib3-$(urllib3-version), , \
+ $(call pybuild, tar -xf, urllib3-$(urllib3-version), , \
Urllib3 $(urllib3-version))
$(ipydir)/webencodings-$(webencodings-version): \
$(ipydir)/setuptools-$(setuptools-version)
tarball=webencodings-$(webencodings-version).tar.gz
$(call import-source, $(webencodings-url), $(webencodings-checksum))
- $(call pybuild, tar xf, webencodings-$(webencodings-version), , \
+ $(call pybuild, tar -xf, webencodings-$(webencodings-version), , \
Webencodings $(webencodings-version))
+
+$(ipydir)/wheel-$(wheel-version): $(ipydir)/setuptools-$(setuptools-version)
+ tarball=wheel-$(wheel-version).tar.lz
+ $(call import-source, $(wheel-url), $(wheel-checksum))
+ $(call pybuild, tar -xf, wheel-$(wheel-version), , \
+ Wheel $(wheel-version))
diff --git a/reproduce/software/make/r-cran.mk b/reproduce/software/make/r-cran.mk
new file mode 100644
index 0000000..617b8de
--- /dev/null
+++ b/reproduce/software/make/r-cran.mk
@@ -0,0 +1,487 @@
+# Build the project's R (here called R-CRAN) dependencies.
+#
+# ------------------------------------------------------------------------
+# !!!!! IMPORTANT NOTES !!!!!
+#
+# This Makefile will be loaded into 'high-level.mk', which is called by the
+# './project configure' script. It is not included into the project
+# afterwards.
+#
+# This Makefile contains instructions to build all the R-CRAN-related
+# software within the project.
+#
+# ------------------------------------------------------------------------
+#
+# Copyright (C) 2022 Boud Roukema <boud@cosmo.torun.pl>
+# Copyright (C) 2022 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+#
+# This Makefile is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This Makefile is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this Makefile. If not, see <http://www.gnu.org/licenses/>.
+
+
+
+
+
+# BUGS/IMPROVEMENTS
+# -----------------
+#
+# As of 2021-06-20, the R system is still very new and has not yet
+# been tested on non-Debian-derived systems. Please provide bug
+# reports ( https://savannah.nongnu.org/task/?15772 ) or propose fixes
+# as git pull requests on a public git server (e.g. on a fork of
+# https://codeberg.org/boud/maneage_dev ).
+
+
+
+
+
+# R-CRAN enviroment
+# -----------------
+#
+# It may be necessary to override host-level R-related environment
+# variables that interfere with the Maneage-installed R system.
+# systems which might interfere.
+
+# Ideas for which environment variables might create problems
+# and might need to be set to be empty here:
+#
+# https://stat.ethz.ch/R-manual/R-devel/library/base/html/EnvVar.html
+
+# These first variables should be set automatically when R starts:
+#export R_HOME := $(idir)/lib/R
+#export R_INCLUDE_DIR := $(idir)/lib/R/include
+
+
+
+
+
+# R-CRAN-specific installation directories.
+r-cran-major-version = $(shell echo $(r-cran-version) \
+ | awk 'BEGIN{FS="."} \
+ {printf "%d.%d\n", $$1, $$2}')
+
+
+
+
+
+# R-CRAN-specific build rules for 'make'
+# ======================================
+
+# Double-check an already downloaded R source
+# -------------------------------------------
+#
+# Check that the tarball with the version in
+# 'reproduce/software/conf/versions.conf' has the sha512sum (checksum)
+# stated 'reproduce/software/conf/checksums.conf'. This does not do any
+# security checks; it only checks that the source file package is the one
+# that is expected the last time that someone updated these two files for
+# the R package of interest.
+#
+# Calculate the checksum and exit with a non-zero error code if there's a
+# mismatch, after informing the user.
+#
+# Arguments:
+# 1: The expected checksum of the tarball.
+#
+# Necessary shell variables
+# 'tarball': This is the name of the actual tarball file without a
+# directory.
+double-check-R-source = final=$(tdir)/$$tarball; \
+ exp_checksum="$(strip $(1))"; \
+ if [ x"$$exp_checksum" = x"NO-CHECK-SUM" ]; then \
+ result=0; \
+ else \
+ if type sha512sum > /dev/null 2>/dev/null; then \
+ checksum=$$(sha512sum "$$final" | awk '{print $$1}'); \
+ if [ x"$$checksum" = x"$$exp_checksum" ]; then \
+ result=0; \
+ else \
+ echo "ERROR: Non-matching checksum: $$final"; \
+ echo "Checksum should be: $$exp_checksum"; \
+ echo "Checksum is: $$checksum"; \
+ result=1; \
+ exit 1; \
+ fi; \
+ else \
+ echo "ERROR: sha512sum is unavailable."; \
+ exit 1; \
+ fi; \
+ fi
+
+# Default 'make' build rules for an CRAN package
+# -----------------------------------------------
+#
+# The default 'install.packages' function of R only recognizes 'tar.gz'
+# tarballs. But Maneage uses '.tar.lz' format for its archival. So to be
+# agnostic to the compression algorithm, we will be using 'tar' externally
+# (before entering R), then give the un-compressed directory to
+# 'install.packages'.
+#
+# Parameters:
+# 1. package name (without 'r-cran', without the version string)
+# 2. version string
+# 3. checksum of the package
+r_cran_build = \
+ pkg=$(strip $(1)); \
+ version=$(strip $(2)); \
+ checksum=$(strip $(3)); \
+ $(call import-source, \
+ https://cran.r-project.org/src/contrib, \
+ $$checksum, \
+ $$tarball, \
+ https://cran.r-project.org/src/contrib/00Archive/$$pkg); \
+ cd "$(ddir)"; \
+ tar -xf $(tdir)/$$tarball; \
+ unpackdir=$$pkg-$$version; \
+ (printf "install.packages(c(\"$(ddir)/$$unpackdir\"),"; \
+ printf 'lib="$(ilibrcrandir)",'; \
+ printf 'repos=NULL,'; \
+ printf 'type="source")\n'; \
+ printf 'quit()\n'; \
+ printf 'n\n') | R --no-save; \
+ rm -rf $$unpackdir; \
+ if [ $$pkg = r-pkgconfig ]; then iname=pkgconfig; \
+ else iname=$$pkg; fi; \
+ if [ -e "$(ilibrcrandir)"/$$iname/Meta/nsInfo.rds ]; then \
+ $(call double-check-R-source, $$checksum) \
+ && echo "$$pkg $$version" > $@; \
+ else \
+ printf "r-cran-$$pkg failed: Meta/nsInfo.rds missing.\n"; \
+ exit 1; \
+ fi
+
+
+
+
+
+# Necessary programs and libraries
+# --------------------------------
+#
+# While this Makefile is for R programs, in some cases, we need certain
+# programs (like R itself), or libraries for the modules. Comment on
+# building R without GUI support ('--without-tcltlk')
+#
+# Tcl/Tk are a set of tools to provide Graphic User Interface (GUI) support
+# in some software. But they are not yet natively built within Maneage,
+# primarily because we have higher-priority work right now (if anyone is
+# interested, they can ofcourse contribute!). GUI tools in general aren't
+# high on our priority list right now because they are generally good for
+# human interaction (which is contrary to the reproducible philosophy:
+# there will always be human-error and frustration, for example in GUI
+# tools the best level of reproducibility is statements like this: "move
+# your mouse to button XXX, then click on menu YYY and etc"). A robust
+# reproducible solution must be done automatically.
+#
+# If someone wants to use R's GUI functionalities while investigating for
+# their analysis, they can do the GUI part on their host OS
+# implementation. Later, they can bring the finalized source into Maneage
+# to be automatically run in Maneage. This will also be the recommended way
+# to deal with GUI tools later when we do install them within Maneage.
+$(ibidir)/r-cran-$(r-cran-version): \
+ $(itidir)/texlive \
+ $(ibidir)/icu-$(icu-version) \
+ $(ibidir)/pcre-$(pcre-version) \
+ $(ibidir)/cairo-$(cairo-version) \
+ $(ibidir)/libpng-$(libpng-version) \
+ $(ibidir)/libjpeg-$(libjpeg-version) \
+ $(ibidir)/libtiff-$(libtiff-version) \
+ $(ibidir)/libpaper-$(libpaper-version)
+
+# Prepare the tarball, unpack it and enter the directory.
+ tarball=R-$(r-cran-version).tar.lz
+ $(call import-source, $(r-cran-url), $(r-cran-checksum))
+ cd $(ddir)
+ tar -xf $(tdir)/$$tarball
+ unpackdir=R-$(r-cran-version)
+ cd $$unpackdir
+
+# We need to manually remove the lines with '~autodetect~', they
+# cause the configure script to crash in version 4.0.2. They are used
+# in relation to Java, and we don't use Java anyway.
+ sed -i -e '/\~autodetect\~/ s/^/#/g' configure
+ export R_SHELL=$(SHELL)
+ ./configure --prefix=$(idir) \
+ --without-x \
+ --with-pcre1 \
+ --disable-java \
+ --with-readline \
+ --without-tcltk \
+ --disable-openmp
+ make -j$(numthreads)
+ make install
+ cd ..
+ rm -rf R-$(r-cran-version)
+ cp -p $(dtexdir)/r-cran.tex $(ictdir)/
+ echo "R $(r-cran-version) \citep{RIhakaGentleman1996}" > $@
+
+
+
+
+
+# Non-Maneage'd tarballs
+# ----------------------
+#
+# CRAN tarballs differ in two aspects from Maneage'd tarballs:
+# - CRAN uses '.tar.gz', while Maneage uses 'tar.lz'.
+# - CRAN uses 'name_version', while Maneage uses 'name-version'.
+#
+# So if you add a new R package, or update the version of an existing one
+# (that is not yet in Maneage's archive), you need to use the CRAN naming
+# format for the 'tarball' variable.
+
+
+
+
+
+# R-CRAN modules
+# ---------------
+#
+# The rules for downloading, compiling and installing any R-CRAN modules
+# that are needed should be provided here. Each target (before the colon)
+# is first shown with its dependence on prerequisites (which are listed
+# after the colon. The default macro 'r_cran_build' will install the
+# package without checking on dependencies.
+
+$(ircrandir)/r-cran-cli-$(r-cran-cli-version): \
+ $(ibidir)/r-cran-$(r-cran-version) \
+ $(ircrandir)/r-cran-glue-$(r-cran-glue-version)
+ tarball=cli-$(r-cran-cli-version).tar.lz
+ $(call r_cran_build, cli, $(r-cran-cli-version), \
+ $(r-cran-cli-checksum))
+
+$(ircrandir)/r-cran-colorspace-$(r-cran-colorspace-version): \
+ $(ibidir)/r-cran-$(r-cran-version)
+ tarball=colorspace-$(r-cran-colorspace-version).tar.lz
+ $(call r_cran_build, colorspace, $(r-cran-colorspace-version), \
+ $(r-cran-colorspace-checksum))
+
+$(ircrandir)/r-cran-cowplot-$(r-cran-cowplot-version): \
+ $(ibidir)/r-cran-$(r-cran-version) \
+ $(ircrandir)/r-cran-rlang-$(r-cran-rlang-version) \
+ $(ircrandir)/r-cran-gtable-$(r-cran-gtable-version) \
+ $(ircrandir)/r-cran-scales-$(r-cran-scales-version) \
+ $(ircrandir)/r-cran-ggplot2-$(r-cran-ggplot2-version)
+ tarball=cowplot-$(r-cran-cowplot-version).tar.lz
+ $(call r_cran_build, cowplot, $(r-cran-cowplot-version), \
+ $(r-cran-cowplot-checksum))
+
+$(ircrandir)/r-cran-crayon-$(r-cran-crayon-version): \
+ $(ibidir)/r-cran-$(r-cran-version)
+ tarball=crayon-$(r-cran-crayon-version).tar.lz
+ $(call r_cran_build, crayon, $(r-cran-crayon-version), \
+ $(r-cran-crayon-checksum))
+
+$(ircrandir)/r-cran-digest-$(r-cran-digest-version): \
+ $(ibidir)/r-cran-$(r-cran-version)
+ tarball=digest-$(r-cran-digest-version).tar.lz
+ $(call r_cran_build, digest, $(r-cran-digest-version), \
+ $(r-cran-digest-checksum))
+
+$(ircrandir)/r-cran-farver-$(r-cran-farver-version): \
+ $(ibidir)/r-cran-$(r-cran-version)
+ tarball=farver-$(r-cran-farver-version).tar.lz
+ $(call r_cran_build, farver, $(r-cran-farver-version), \
+ $(r-cran-farver-checksum))
+
+$(ircrandir)/r-cran-ellipsis-$(r-cran-ellipsis-version): \
+ $(ibidir)/r-cran-$(r-cran-version) \
+ $(ircrandir)/r-cran-rlang-$(r-cran-rlang-version)
+ tarball=ellipsis-$(r-cran-ellipsis-version).tar.lz
+ $(call r_cran_build, ellipsis, $(r-cran-ellipsis-version), \
+ $(r-cran-ellipsis-checksum))
+
+$(ircrandir)/r-cran-fansi-$(r-cran-fansi-version): \
+ $(ibidir)/r-cran-$(r-cran-version)
+ tarball=fansi-$(r-cran-fansi-version).tar.lz
+ $(call r_cran_build, fansi, $(r-cran-fansi-version), \
+ $(r-cran-fansi-checksum))
+
+$(ircrandir)/r-cran-ggplot2-$(r-cran-ggplot2-version): \
+ $(ibidir)/r-cran-$(r-cran-version) \
+ $(ircrandir)/r-cran-glue-$(r-cran-glue-version) \
+ $(ircrandir)/r-cran-mgcv-$(r-cran-mgcv-version) \
+ $(ircrandir)/r-cran-MASS-$(r-cran-MASS-version) \
+ $(ircrandir)/r-cran-rlang-$(r-cran-rlang-version) \
+ $(ircrandir)/r-cran-withr-$(r-cran-withr-version) \
+ $(ircrandir)/r-cran-digest-$(r-cran-digest-version) \
+ $(ircrandir)/r-cran-gtable-$(r-cran-gtable-version) \
+ $(ircrandir)/r-cran-scales-$(r-cran-scales-version) \
+ $(ircrandir)/r-cran-tibble-$(r-cran-tibble-version) \
+ $(ircrandir)/r-cran-isoband-$(r-cran-isoband-version)
+ tarball=ggplot2-$(r-cran-ggplot2-version).tar.lz
+ $(call r_cran_build, ggplot2, $(r-cran-ggplot2-version), \
+ $(r-cran-ggplot2-checksum))
+
+$(ircrandir)/r-cran-glue-$(r-cran-glue-version): \
+ $(ibidir)/r-cran-$(r-cran-version)
+ tarball=glue-$(r-cran-glue-version).tar.lz
+ $(call r_cran_build, glue, $(r-cran-glue-version), \
+ $(r-cran-glue-checksum))
+
+$(ircrandir)/r-cran-gridExtra-$(r-cran-gridExtra-version): \
+ $(ibidir)/r-cran-$(r-cran-version) \
+ $(ircrandir)/r-cran-gtable-$(r-cran-gtable-version)
+ tarball=gridExtra-$(r-cran-gridExtra-version).tar.lz
+ $(call r_cran_build, gridExtra, $(r-cran-gridExtra-version), \
+ $(r-cran-gridExtra-checksum))
+
+$(ircrandir)/r-cran-gtable-$(r-cran-gtable-version): \
+ $(ibidir)/r-cran-$(r-cran-version)
+ tarball=gtable-$(r-cran-gtable-version).tar.lz
+ $(call r_cran_build, gtable, $(r-cran-gtable-version), \
+ $(r-cran-gtable-checksum))
+
+$(ircrandir)/r-cran-isoband-$(r-cran-isoband-version): \
+ $(ibidir)/r-cran-$(r-cran-version)
+ tarball=isoband-$(r-cran-isoband-version).tar.lz
+ $(call r_cran_build, isoband, $(r-cran-isoband-version), \
+ $(r-cran-isoband-checksum))
+
+$(ircrandir)/r-cran-labeling-$(r-cran-labeling-version): \
+ $(ibidir)/r-cran-$(r-cran-version)
+ tarball=labeling-$(r-cran-labeling-version).tar.lz
+ $(call r_cran_build, labeling, $(r-cran-labeling-version), \
+ $(r-cran-labeling-checksum))
+
+$(ircrandir)/r-cran-lifecycle-$(r-cran-lifecycle-version): \
+ $(ibidir)/r-cran-$(r-cran-version) \
+ $(ircrandir)/r-cran-glue-$(r-cran-glue-version) \
+ $(ircrandir)/r-cran-rlang-$(r-cran-rlang-version)
+ tarball=lifecycle-$(r-cran-lifecycle-version).tar.lz
+ $(call r_cran_build, lifecycle, $(r-cran-lifecycle-version), \
+ $(r-cran-lifecycle-checksum))
+
+$(ircrandir)/r-cran-magrittr-$(r-cran-magrittr-version): \
+ $(ibidir)/r-cran-$(r-cran-version)
+ tarball=magrittr-$(r-cran-magrittr-version).tar.lz
+ $(call r_cran_build, magrittr, $(r-cran-magrittr-version), \
+ $(r-cran-magrittr-checksum))
+
+$(ircrandir)/r-cran-MASS-$(r-cran-MASS-version): \
+ $(ibidir)/r-cran-$(r-cran-version)
+ tarball=MASS-$(r-cran-MASS-version).tar.lz
+ $(call r_cran_build, MASS, $(r-cran-MASS-version), \
+ $(r-cran-MASS-checksum))
+
+# The base R-2.0.4 install includes nlme and Matrix.
+# https://cran.r-project.org/web/packages/mgcv/index.html
+$(ircrandir)/r-cran-mgcv-$(r-cran-mgcv-version): \
+ $(ibidir)/r-cran-$(r-cran-version)
+ tarball=mgcv-$(r-cran-mgcv-version).tar.lz
+ $(call r_cran_build, mgcv, $(r-cran-mgcv-version), \
+ $(r-cran-mgcv-checksum))
+
+$(ircrandir)/r-cran-munsell-$(r-cran-munsell-version): \
+ $(ibidir)/r-cran-$(r-cran-version) \
+ $(ircrandir)/r-cran-colorspace-$(r-cran-colorspace-version)
+ tarball=munsell-$(r-cran-munsell-version).tar.lz
+ $(call r_cran_build, munsell, $(r-cran-munsell-version), \
+ $(r-cran-munsell-checksum))
+
+#TODO: https://cran.r-project.org/web/packages/pillar/index.html
+$(ircrandir)/r-cran-pillar-$(r-cran-pillar-version): \
+ $(ibidir)/r-cran-$(r-cran-version) \
+ $(ircrandir)/r-cran-cli-$(r-cran-cli-version) \
+ $(ircrandir)/r-cran-utf8-$(r-cran-utf8-version) \
+ $(ircrandir)/r-cran-fansi-$(r-cran-fansi-version) \
+ $(ircrandir)/r-cran-rlang-$(r-cran-rlang-version) \
+ $(ircrandir)/r-cran-vctrs-$(r-cran-vctrs-version) \
+ $(ircrandir)/r-cran-crayon-$(r-cran-crayon-version) \
+ $(ircrandir)/r-cran-ellipsis-$(r-cran-ellipsis-version) \
+ $(ircrandir)/r-cran-lifecycle-$(r-cran-lifecycle-version)
+ tarball=pillar-$(r-cran-pillar-version).tar.lz
+ $(call r_cran_build, pillar, $(r-cran-pillar-version), \
+ $(r-cran-pillar-checksum))
+
+# Since we have other software packages with the name 'pkgconfig', to avoid
+# confusion with those tarballs, we have put a 'r-' prefix in the tarball
+# name. If you want to use the CRAN tarball, please correct the name
+# accordingly (as described in the comment above this group of rules).
+$(ircrandir)/r-cran-pkgconfig-$(r-cran-pkgconfig-version): \
+ $(ibidir)/r-cran-$(r-cran-version)
+ tarball=r-pkgconfig-$(r-cran-pkgconfig-version).tar.lz
+ $(call r_cran_build, r-pkgconfig, $(r-cran-pkgconfig-version), \
+ $(r-cran-pkgconfig-checksum))
+
+$(ircrandir)/r-cran-RColorBrewer-$(r-cran-RColorBrewer-version): \
+ $(ibidir)/r-cran-$(r-cran-version)
+ tarball=RColorBrewer-$(r-cran-RColorBrewer-version).tar.lz
+ $(call r_cran_build, RColorBrewer, $(r-cran-RColorBrewer-version), \
+ $(r-cran-RColorBrewer-checksum))
+
+$(ircrandir)/r-cran-R6-$(r-cran-R6-version): \
+ $(ibidir)/r-cran-$(r-cran-version)
+ tarball=R6-$(r-cran-R6-version).tar.lz
+ $(call r_cran_build, R6, $(r-cran-R6-version), $(r-cran-R6-checksum))
+
+$(ircrandir)/r-cran-rlang-$(r-cran-rlang-version): \
+ $(ibidir)/r-cran-$(r-cran-version)
+ tarball=rlang-$(r-cran-rlang-version).tar.lz
+ $(call r_cran_build, rlang, $(r-cran-rlang-version), \
+ $(r-cran-rlang-checksum))
+
+# https://cran.r-project.org/web/packages/scales/index.html
+$(ircrandir)/r-cran-scales-$(r-cran-scales-version): \
+ $(ibidir)/r-cran-$(r-cran-version) \
+ $(ircrandir)/r-cran-R6-$(r-cran-R6-version) \
+ $(ircrandir)/r-cran-farver-$(r-cran-farver-version) \
+ $(ircrandir)/r-cran-munsell-$(r-cran-munsell-version) \
+ $(ircrandir)/r-cran-labeling-$(r-cran-labeling-version) \
+ $(ircrandir)/r-cran-lifecycle-$(r-cran-lifecycle-version) \
+ $(ircrandir)/r-cran-viridisLite-$(r-cran-viridisLite-version) \
+ $(ircrandir)/r-cran-RColorBrewer-$(r-cran-RColorBrewer-version)
+ tarball=scales-$(r-cran-scales-version).tar.lz
+ $(call r_cran_build, scales, $(r-cran-scales-version), \
+ $(r-cran-scales-checksum))
+
+#https://cran.r-project.org/web/packages/tibble/index.html
+$(ircrandir)/r-cran-tibble-$(r-cran-tibble-version): \
+ $(ibidir)/r-cran-$(r-cran-version) \
+ $(ircrandir)/r-cran-fansi-$(r-cran-fansi-version) \
+ $(ircrandir)/r-cran-rlang-$(r-cran-rlang-version) \
+ $(ircrandir)/r-cran-vctrs-$(r-cran-vctrs-version) \
+ $(ircrandir)/r-cran-pillar-$(r-cran-pillar-version) \
+ $(ircrandir)/r-cran-ellipsis-$(r-cran-ellipsis-version) \
+ $(ircrandir)/r-cran-magrittr-$(r-cran-magrittr-version) \
+ $(ircrandir)/r-cran-lifecycle-$(r-cran-lifecycle-version) \
+ $(ircrandir)/r-cran-pkgconfig-$(r-cran-pkgconfig-version)
+ tarball=tibble-$(r-cran-tibble-version).tar.lz
+ $(call r_cran_build, tibble, $(r-cran-tibble-version), \
+ $(r-cran-tibble-checksum))
+
+$(ircrandir)/r-cran-utf8-$(r-cran-utf8-version): \
+ $(ibidir)/r-cran-$(r-cran-version)
+ tarball=utf8-$(r-cran-utf8-version).tar.lz
+ $(call r_cran_build, utf8, $(r-cran-utf8-version), \
+ $(r-cran-utf8-checksum))
+
+$(ircrandir)/r-cran-vctrs-$(r-cran-vctrs-version): \
+ $(ibidir)/r-cran-$(r-cran-version) \
+ $(ircrandir)/r-cran-glue-$(r-cran-glue-version) \
+ $(ircrandir)/r-cran-rlang-$(r-cran-rlang-version) \
+ $(ircrandir)/r-cran-ellipsis-$(r-cran-ellipsis-version)
+ tarball=vctrs-$(r-cran-vctrs-version).tar.lz
+ $(call r_cran_build, vctrs, $(r-cran-vctrs-version), \
+ $(r-cran-vctrs-checksum))
+
+$(ircrandir)/r-cran-viridisLite-$(r-cran-viridisLite-version): \
+ $(ibidir)/r-cran-$(r-cran-version)
+ tarball=viridisLite-$(r-cran-viridisLite-version).tar.lz
+ $(call r_cran_build, viridisLite, $(r-cran-viridisLite-version), \
+ $(r-cran-viridisLite-checksum))
+
+$(ircrandir)/r-cran-withr-$(r-cran-withr-version): \
+ $(ibidir)/r-cran-$(r-cran-version)
+ tarball=withr-$(r-cran-withr-version).tar.lz
+ $(call r_cran_build, withr, $(r-cran-withr-version), \
+ $(r-cran-withr-checksum))
diff --git a/reproduce/software/make/xorg.mk b/reproduce/software/make/xorg.mk
index 3178cb4..6e62595 100644
--- a/reproduce/software/make/xorg.mk
+++ b/reproduce/software/make/xorg.mk
@@ -4,7 +4,7 @@
# !!!!! IMPORTANT NOTES !!!!!
#
# This Makefile will be loaded into 'high-level.mk', which is called by the
-# `./project configure' script. It is not included into the project
+# './project configure' script. It is not included into the project
# afterwards.
#
# This Makefile contains instructions to build all the Xorg-related
@@ -14,8 +14,8 @@
#
# ------------------------------------------------------------------------
#
-# Copyright (C) 2021 Mohammad Akhlaghi <mohammad@akhlaghi.org>
-# Copyright (C) 2021 Raul Infante-Sainz <infantesainz@gmail.com>
+# Copyright (C) 2021-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+# Copyright (C) 2021-2022 Raul Infante-Sainz <infantesainz@gmail.com>
#
# This Makefile is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
@@ -57,7 +57,7 @@ $(idir)/etc/profile.d/xorg.sh: | $(idir)/etc/profile.d
$(ibidir)/util-macros-$(util-macros-version): \
$(idir)/etc/profile.d/xorg.sh \
$(ibidir)/automake-$(automake-version)
- tarball=util-macros-$(util-macros-version).tar.bz2
+ tarball=util-macros-$(util-macros-version).tar.lz
$(call import-source, $(util-macros-url), $(util-macros-checksum))
$(call gbuild, util-macros-$(util-macros-version),,$(XORG_CONFIG),V=1)
echo "util-macros (Xorg) $(util-macros-version)" > $@
@@ -65,14 +65,14 @@ $(ibidir)/util-macros-$(util-macros-version): \
# Necessaary headers to define the Xorg protocols.
$(ibidir)/xorgproto-$(xorgproto-version): \
$(ibidir)/util-macros-$(util-macros-version)
- tarball=xorgproto-$(xorgproto-version).tar.bz2
+ tarball=xorgproto-$(xorgproto-version).tar.lz
$(call import-source, $(xorg-proto-url), $(xorgproto-checksum))
$(call gbuild, xorgproto-$(xorgproto-version),,$(XORG_CONFIG),V=1)
echo "xorgproto $(xorgproto-version)" > $@
# Necessaary headers to define the Xorg protocols.
$(ibidir)/libxau-$(libxau-version): $(ibidir)/xorgproto-$(xorgproto-version)
- tarball=libXau-$(libxau-version).tar.bz2
+ tarball=libXau-$(libxau-version).tar.lz
$(call import-source, $(libaxu-url), $(libxau-checksum))
$(call gbuild, libXau-$(libxau-version),,$(XORG_CONFIG), V=1)
echo "libXau (Xorg) $(libxau-version)" > $@
@@ -88,7 +88,7 @@ $(ibidir)/libxdmcp-$(libxdmcp-version): $(ibidir)/libxau-$(libxau-version)
$(ibidir)/xcb-proto-$(xcb-proto-version): \
$(ibidir)/python-$(python-version) \
$(ibidir)/libxml2-$(libxml2-version)
- tarball=xcb-proto-$(xcb-proto-version).tar.xz
+ tarball=xcb-proto-$(xcb-proto-version).tar.lz
$(call import-source, $(xcb-proto-url), $(xcb-proto-checksum))
$(call gbuild, xcb-proto-$(xcb-proto-version),,$(XORG_CONFIG), V=1)
echo "XCB-proto (Xorg) $(xcb-proto-version)" > $@
@@ -98,7 +98,7 @@ $(ibidir)/libxcb-$(libxcb-version): \
$(ibidir)/libxdmcp-$(libxdmcp-version) \
$(ibidir)/xcb-proto-$(xcb-proto-version) \
$(ibidir)/libpthread-stubs-$(libpthread-stubs-version)
- tarball=libxcb-$(libxcb-version).tar.xz
+ tarball=libxcb-$(libxcb-version).tar.lz
$(call import-source, $(libxcb-url), $(libxcb-checksum))
$(call gbuild, libxcb-$(libxcb-version),, \
$(XORG_CONFIG) --without-doxygen, \
@@ -107,7 +107,7 @@ $(ibidir)/libxcb-$(libxcb-version): \
$(ibidir)/libpthread-stubs-$(libpthread-stubs-version): \
$(ibidir)/automake-$(automake-version)
- tarball=libpthread-stubs-$(libpthread-stubs-version).tar.gz
+ tarball=libpthread-stubs-$(libpthread-stubs-version).tar.lz
$(call import-source, $(libpthread-stubs-url), $(libpthread-stubs-checksum))
$(call gbuild, libpthread-stubs-$(libpthread-stubs-version),, V=1)
echo "libpthread-stubs (Xorg) $(libpthread-stubs-version)" > $@
@@ -116,11 +116,12 @@ $(ibidir)/libpthread-stubs-$(libpthread-stubs-version): \
$(ibidir)/fontconfig-$(fontconfig-version): \
$(ibidir)/gperf-$(gperf-version) \
$(ibidir)/expat-$(expat-version) \
+ $(ibidir)/python-$(python-version) \
$(ibidir)/libxml2-$(libxml2-version) \
$(ibidir)/freetype-$(freetype-version) \
$(ibidir)/util-linux-$(util-linux-version)
# Import the source.
- tarball=fontconfig-$(fontconfig-version).tar.bz2
+ tarball=fontconfig-$(fontconfig-version).tar.lz
$(call import-source, $(fontconfig-url), $(fontconfig-checksum))
# Add the extra environment variables for using 'libuuid' of
@@ -139,27 +140,27 @@ $(ibidir)/fontconfig-$(fontconfig-version): \
$(ibidir)/xtrans-$(xtrans-version): \
$(ibidir)/libxcb-$(libxcb-version) \
$(ibidir)/fontconfig-$(fontconfig-version)
- tarball=xtrans-$(xtrans-version).tar.bz2
+ tarball=xtrans-$(xtrans-version).tar.lz
$(call import-source, $(xtrans-url), $(xtrans-checksum))
$(call gbuild, xtrans-$(xtrans-version),,$(XORG_CONFIG), V=1)
echo "xtrans (Xorg) $(xtrans-version)" > $@
$(ibidir)/libx11-$(libx11-version): $(ibidir)/xtrans-$(xtrans-version)
- tarball=libX11-$(libx11-version).tar.bz2
+ tarball=libX11-$(libx11-version).tar.lz
$(call import-source, $(libx11-url), $(libx11-checksum))
$(call gbuild, libX11-$(libx11-version),,$(XORG_CONFIG), \
-j$(numthreads) V=1)
echo "X11 library $(libx11-version)" > $@
$(ibidir)/libxext-$(libxext-version): $(ibidir)/libx11-$(libx11-version)
- tarball=libXext-$(libxext-version).tar.bz2
+ tarball=libXext-$(libxext-version).tar.lz
$(call import-source, $(libxext-url), $(libxext-checksum))
$(call gbuild, libXext-$(libxext-version),,$(XORG_CONFIG), \
-j$(numthreads) V=1)
echo "libXext $(libxext-version)" > $@
$(ibidir)/libice-$(libice-version): $(ibidir)/libxext-$(libxext-version)
- tarball=libICE-$(libice-version).tar.bz2
+ tarball=libICE-$(libice-version).tar.lz
$(call import-source, $(libice-url), $(libice-checksum))
$(call gbuild, libICE-$(libice-version),, \
$(XORG_CONFIG) ICE_LIBS=-lpthread, \
@@ -167,14 +168,14 @@ $(ibidir)/libice-$(libice-version): $(ibidir)/libxext-$(libxext-version)
echo "libICE $(libice-version)" > $@
$(ibidir)/libsm-$(libsm-version): $(ibidir)/libice-$(libice-version)
- tarball=libSM-$(libsm-version).tar.bz2
+ tarball=libSM-$(libsm-version).tar.lz
$(call import-source, $(libsm-url), $(libsm-checksum))
$(call gbuild, libSM-$(libsm-version),, \
$(XORG_CONFIG), -j$(numthreads) V=1)
echo "libSM $(libsm-version)" > $@
$(ibidir)/libxt-$(libxt-version): $(ibidir)/libsm-$(libsm-version)
- tarball=libXt-$(libxt-version).tar.bz2
+ tarball=libXt-$(libxt-version).tar.lz
$(call import-source, $(libxt-url), $(libxt-checksum))
$(call gbuild, libXt-$(libxt-version),, \
$(XORG_CONFIG), -j$(numthreads) V=1)
generated by cgit v1.2.1 (git 2.18.0) at 2024-12-22 09:12:06 +0000