diff options
47 files changed, 128 insertions, 162 deletions
diff --git a/.dir-locals.el b/.dir-locals.el index 20d5a6e..8c3e759 100644 --- a/.dir-locals.el +++ b/.dir-locals.el @@ -9,7 +9,8 @@ ;; ;; For more information see (info "(emacs) Directory Variables") ;; -;; Copyright (C) 2018-2019 Mohammad Akhlaghi. +;; Copyright (C) 2017 Mosè Giordano <mose@gnu.org> +;; Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> ;; ;; Copying and distribution of this file, with or without modification, ;; are permitted in any medium without royalty provided the copyright @@ -9,7 +9,7 @@ # To help readability, please add new files based on the length of the # line you wish to add. # -# Copyright (C) 2018-2019 Mohammad Akhlaghi. +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # Copying and distribution of this file, with or without modification, # are permitted in any medium without royalty provided the copyright diff --git a/README-hacking.md b/README-hacking.md index eaa9196..56f613b 100644 --- a/README-hacking.md +++ b/README-hacking.md @@ -1,9 +1,9 @@ -Copyright (C) 2018-2019 Mohammad Akhlaghi. -See the end of the file for license conditions. - Reproducible paper template =========================== +Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> +See the end of the file for license conditions. + This project contains a **fully working template** for a high-level research reproduction pipeline, or reproducible paper, as defined in the link below. If the link below is not accessible at the time of reading, @@ -179,7 +179,7 @@ used as a good working model to build your own. - Section 7.3 of Bacon et al. ([2017](http://adsabs.harvard.edu/abs/2017A%26A...608A...1B), A&A 608, A1): The version controlled reproduction pipeline is available [on - Gitlab](https://gitlab.com/makhlaghi/muse-udf-origin-only-hst-magnitudes) + GitLab](https://gitlab.com/makhlaghi/muse-udf-origin-only-hst-magnitudes) and a snapshot of the pipeline along with all the necessary input datasets and outputs is available in [zenodo.1164774](https://doi.org/10.5281/zenodo.1164774). @@ -187,7 +187,7 @@ used as a good working model to build your own. - Section 4 of Bacon et al. ([2017](http://adsabs.harvard.edu/abs/2017A%26A...608A...1B), A&A, 608, A1): The version controlled reproduction pipeline is available [on - Gitlab](https://gitlab.com/makhlaghi/muse-udf-photometry-astrometry) and + GitLab](https://gitlab.com/makhlaghi/muse-udf-photometry-astrometry) and a snapshot of the pipeline along with all the necessary input datasets is available in [zenodo.1163746](https://doi.org/10.5281/zenodo.1163746). @@ -195,7 +195,7 @@ used as a good working model to build your own. - Akhlaghi & Ichikawa ([2015](http://adsabs.harvard.edu/abs/2015ApJS..220....1A), ApJS, 220, 1): The version controlled reproduction pipeline is available [on - Gitlab](https://gitlab.com/makhlaghi/NoiseChisel-paper). This is the + GitLab](https://gitlab.com/makhlaghi/NoiseChisel-paper). This is the very first (and much less mature) implementation of this pipeline: the history of this template pipeline started more than two years after that paper was published. It is a very rudimentary/initial implementation, @@ -380,7 +380,7 @@ Finally, we'll just import all the configuration-Makefiles with a wildcard workhorse-Makefiles are imported in the proper order using a Make `foreach` loop. This finishes the general view of the pipeline's implementation. -In short, to keep things modular, readable and managable, follow these +In short, to keep things modular, readable and manageable, follow these recommendations: 1) Set clear-to-understand names for the configuration-Makefiles, and workhorse-Makefiles, 2) Only import other Makefiles from top Makefile. These will let you know/remember generally @@ -597,20 +597,23 @@ advanced in later stages of your work. with. Also check and update this file one last time when you are ready to publish your work (and its reproduction pipeline). - - **Copyright**: All the "copyrightable" files (those larger than 10 - lines) must have a copyright statement and license notice. As you - progress with the project and modify files to customize for your - project change the copyright owner to your self (since this template - is free software, you can do this after you edit any part of - it). Also, don't forget to add similar notices to new files you add - for your own project. You can always find the files without a - copyright notice using this command: + - **Copyright and License notice**: To be usable/modifiable by others + after publication, _all_ the "copyright-able" files in your project + (those larger than 10 lines) must have a copyright notice and license + notice. Please take a moment to look at several existing files to see + a few examples. The copyright notice is usually close to the start of + the file, it is the line starting with `Copyright (C)` and containing + a year and the author's name. The License notice is a short (or full, + when its not too long, like the MIT license) description of the + copyright license, usually less than three paragraphs. Don't forget to + add these _two_ notices to any new file you add to this template for + your project. When you modify an existing template file (which already + has the notices), just add a copyright notice in your name under the + existing one(s), like the line below: - ```shell - find . -type f ! -path ./.git/\* \ - | while read i; do \ - grep -qi 'copyright \((c)\|[&]copy;\|@copyright\)' $i || echo $i;\ - done + ``` + Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> + Copyright (C) 2019 YOUR NAME <YOUR@EMAIL.ADDRESS> ``` - **Your first commit**: You have already made some small and basic @@ -1,7 +1,7 @@ Reproduction pipeline for paper XXXXXXX ======================================= -Copyright (C) 2018-2019 Mohammad Akhlaghi. +Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> See the end of the file for license conditions. This is the reproduction pipeline for the paper titled "**XXXXXX**", by @@ -92,9 +92,7 @@ Copyright information This file and `.file-metadata' (a binary file, used by Metastore to store file dates when doing Git checkouts) are part of the reproducible paper template (https://gitlab.com/makhlaghi/reproducible-paper) and share the -same copyright below. - -Copyright (C) 2018-2019 Mohammad Akhlaghi. +same copyright (below). This template is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free @@ -2,11 +2,7 @@ # # Necessary preparations/configurations for the reproduction pipeline. # -# Original author: -# Mohammad Akhlaghi <mohammad@akhlaghi.org> -# Contributing author(s): -# Your name <your@email.address> -# Copyright (C) 2018-2019, Your Name. +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # This script is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by @@ -16,11 +16,7 @@ # 1) Group owner will be the group specified in the command-line. # 2) The permission flags give write access to the group members. # -# Original author: -# Mohammad Akhlaghi <mohammad@akhlaghi.org> -# Contributing author(s): -# Your name <your@email.address> -# Copyright (C) 2019, Mohammad Akhlaghi. +# Copyright (C) 2019, Mohammad Akhlaghi <mohammad@akhlaghi.org> # # This script is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by @@ -1,4 +1,4 @@ -%% Copyright (C) 2018-2019 Mohammad Akhlaghi. +%% Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> %% See the end of the file for license conditions. \documentclass[10pt, twocolumn]{article} diff --git a/reproduce/config/gnuastro/astbuildprog.conf b/reproduce/config/gnuastro/astbuildprog.conf index 6feb1ac..c15baf1 100644 --- a/reproduce/config/gnuastro/astbuildprog.conf +++ b/reproduce/config/gnuastro/astbuildprog.conf @@ -2,7 +2,7 @@ # along with the rest of Gnuastro. So we'll set any specific configuration # we want here, then import those. # -# Copyright (C) 2018-2019 Mohammad Akhlaghi. +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # Copying and distribution of this file, with or without modification, are # permitted in any medium without royalty provided the copyright notice and diff --git a/reproduce/config/gnuastro/astconvertt.conf b/reproduce/config/gnuastro/astconvertt.conf index 6558edd..6466455 100644 --- a/reproduce/config/gnuastro/astconvertt.conf +++ b/reproduce/config/gnuastro/astconvertt.conf @@ -12,7 +12,7 @@ # $ info astconvertt # All options and input/output. # $ info gnuastro "Configuration files" # How to use configuration files. # -# Copyright (C) 2018-2019 Mohammad Akhlaghi. +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # Copying and distribution of this file, with or without modification, are # permitted in any medium without royalty provided the copyright notice and diff --git a/reproduce/config/gnuastro/aststatistics.conf b/reproduce/config/gnuastro/aststatistics.conf index 3ace941..1d13e3f 100644 --- a/reproduce/config/gnuastro/aststatistics.conf +++ b/reproduce/config/gnuastro/aststatistics.conf @@ -12,7 +12,7 @@ # $ info aststatistics # All options and input/output. # $ info gnuastro "Configuration files" # How to use configuration files. # -# Copyright (C) 2018-2019 Mohammad Akhlaghi. +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # Copying and distribution of this file, with or without modification, are # permitted in any medium without royalty provided the copyright notice and diff --git a/reproduce/config/gnuastro/gnuastro.conf b/reproduce/config/gnuastro/gnuastro.conf index 3d53e06..fbdfa37 100644 --- a/reproduce/config/gnuastro/gnuastro.conf +++ b/reproduce/config/gnuastro/gnuastro.conf @@ -10,7 +10,7 @@ # pipeline is taken from the default Gnuastro configuration from its # source (`bin/gnuastro.conf'). # -# Copyright (C) 2018-2019 Mohammad Akhlaghi. +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # Copying and distribution of this file, with or without modification, are # permitted in any medium without royalty provided the copyright notice and diff --git a/reproduce/config/pipeline/INPUTS.mk b/reproduce/config/pipeline/INPUTS.mk index 7f5a4c1..dbcb5fe 100644 --- a/reproduce/config/pipeline/INPUTS.mk +++ b/reproduce/config/pipeline/INPUTS.mk @@ -2,7 +2,7 @@ # # This file is read by the configure script and running Makefiles. # -# Copyright (C) 2018-2019 Mohammad Akhlaghi. +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # Copying and distribution of this file, with or without modification, are # permitted in any medium without royalty provided the copyright notice and diff --git a/reproduce/config/pipeline/LOCAL.mk.in b/reproduce/config/pipeline/LOCAL.mk.in index b986520..7de88d3 100644 --- a/reproduce/config/pipeline/LOCAL.mk.in +++ b/reproduce/config/pipeline/LOCAL.mk.in @@ -3,7 +3,7 @@ # This is just a template for the `./configure' script to fill in. Please # don't make any change to this file. # -# Copyright (C) 2018-2019 Mohammad Akhlaghi. +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # Copying and distribution of this file, with or without modification, are # permitted in any medium without royalty provided the copyright notice and diff --git a/reproduce/config/pipeline/dependency-numpy-scipy.cfg b/reproduce/config/pipeline/dependency-numpy-scipy.cfg index d250b5b..7590427 100644 --- a/reproduce/config/pipeline/dependency-numpy-scipy.cfg +++ b/reproduce/config/pipeline/dependency-numpy-scipy.cfg @@ -7,7 +7,7 @@ # appropriate sections. Not all packages will use all sections so you # should leave out sections that your package does not use. # -# Copyright (C) 2018-2019 Mohammad Akhlaghi. +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # Copying and distribution of this file, with or without modification, are # permitted in any medium without royalty provided the copyright notice and diff --git a/reproduce/config/pipeline/dependency-texlive.mk b/reproduce/config/pipeline/dependency-texlive.mk index 0e3b4ff..0acf5ab 100644 --- a/reproduce/config/pipeline/dependency-texlive.mk +++ b/reproduce/config/pipeline/dependency-texlive.mk @@ -4,7 +4,7 @@ # name to this variable (you can check in `ctan.org' to find the official # name). # -# Copyright (C) 2018-2019 Mohammad Akhlaghi. +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # Copying and distribution of this file, with or without modification, are # permitted in any medium without royalty provided the copyright notice and diff --git a/reproduce/config/pipeline/dependency-versions.mk b/reproduce/config/pipeline/dependency-versions.mk index 91d1265..c6c8043 100644 --- a/reproduce/config/pipeline/dependency-versions.mk +++ b/reproduce/config/pipeline/dependency-versions.mk @@ -1,10 +1,7 @@ # Versions of the various dependencies # -# Original author: -# Mohammad Akhlaghi <mohammad@akhlaghi.org> -# Contributing author(s): -# Raul Infante-Sainz <infantesainz@gmail.com> -# Copyright (C) 2018-2019, Your Name. +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> +# Copyright (C) 2019 Raul Infante-Sainz <infantesainz@gmail.com> # # This Makefile is free software: you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by the diff --git a/reproduce/config/pipeline/pdf-build.mk b/reproduce/config/pipeline/pdf-build.mk index ccf9f64..02af72d 100644 --- a/reproduce/config/pipeline/pdf-build.mk +++ b/reproduce/config/pipeline/pdf-build.mk @@ -12,7 +12,7 @@ # LaTeX. Otherwise, a notice will just printed that for now, no PDF will be # created. # -# Copyright (C) 2018-2019 Mohammad Akhlaghi. +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # Copying and distribution of this file, with or without modification, are # permitted in any medium without royalty provided the copyright notice and diff --git a/reproduce/config/pipeline/texlive.conf b/reproduce/config/pipeline/texlive.conf index 0010c70..8a9fb8e 100644 --- a/reproduce/config/pipeline/texlive.conf +++ b/reproduce/config/pipeline/texlive.conf @@ -3,7 +3,7 @@ # installdir: Install directory # topdir: Top pipeline directory # -# Copyright (C) 2018-2019 Mohammad Akhlaghi. +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # Copying and distribution of this file, with or without modification, are # permitted in any medium without royalty provided the copyright notice and diff --git a/reproduce/src/bash/download-multi-try b/reproduce/src/bash/download-multi-try index cdeca8e..2399b5d 100755 --- a/reproduce/src/bash/download-multi-try +++ b/reproduce/src/bash/download-multi-try @@ -22,10 +22,7 @@ # benefit from it, any call to this script must be given the same lock # file. # -# Original author: -# Mohammad Akhlaghi <mohammad@akhlaghi.org> -# Contributing author(s): -# Copyright (C) 2019, Mohammad Akhlaghi. +# Copyright (C) 2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # This script is free software: you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by the diff --git a/reproduce/src/bash/git-post-checkout b/reproduce/src/bash/git-post-checkout index 12fbc9c..ef85c44 100644 --- a/reproduce/src/bash/git-post-checkout +++ b/reproduce/src/bash/git-post-checkout @@ -3,13 +3,34 @@ # The example hook script to store the metadata information of version # controlled files (with each commit) using the `metastore' program. # -# Copyright (C) 2018-2019 Mohammad Akhlaghi. +# Copyright (C) 2016 Przemyslaw Pawelczyk <przemoc@gmail.com> +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # This script is taken from the `examples/hooks/pre-commit' file of the # `metastore' package (installed within the pipeline, with an MIT license # for copyright). We have just changed the name of the `MSFILE' and also # set special characters for the installation location of meta-store so our # own installation is found by Git. +# +# Permission is hereby granted, free of charge, to any person obtaining a +# copy of this software and associated documentation files (the +# "Software"), to deal in the Software without restriction, including +# without limitation the rights to use, copy, modify, merge, publish, +# distribute, sublicense, and/or sell copies of the Software, and to permit +# persons to whom the Software is furnished to do so, subject to the +# following conditions: +# +# The above copyright notice and this permission notice shall be included +# in all copies or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS +# OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF +# MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN +# NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, +# DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR +# OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE +# USE OR OTHER DEALINGS IN THE SOFTWARE. + # File containig the metadata and metastore executable. MSFILE=".file-metadata" diff --git a/reproduce/src/bash/git-pre-commit b/reproduce/src/bash/git-pre-commit index 424df04..09abce7 100644 --- a/reproduce/src/bash/git-pre-commit +++ b/reproduce/src/bash/git-pre-commit @@ -3,13 +3,8 @@ # The example hook script to store the metadata information of version # controlled files (with each commit) using the `metastore' program. # -# Copyright (C) 2018-2019 Mohammad Akhlaghi. -# -# This script is taken from the `examples/hooks/pre-commit' file of the -# `metastore' package (installed within the pipeline, with an MIT license -# for copyright). We have just changed the name of the `MSFILE' and also -# set special characters for the installation location of meta-store so our -# own installation is found by Git. +# Copyright (C) 2016 Przemyslaw Pawelczyk <przemoc@gmail.com> +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # WARNING: # @@ -21,6 +16,31 @@ # # git reset HEAD -- .metadata # git checkout HEAD -- .metadata +# +# This script is taken from the `examples/hooks/pre-commit' file of the +# `metastore' package (installed within the pipeline, with an MIT license +# for copyright). Here, the name of the `MSFILE' and also set special +# characters for the installation location of meta-store so our own +# installation is found by Git. +# +# Permission is hereby granted, free of charge, to any person obtaining a +# copy of this software and associated documentation files (the +# "Software"), to deal in the Software without restriction, including +# without limitation the rights to use, copy, modify, merge, publish, +# distribute, sublicense, and/or sell copies of the Software, and to permit +# persons to whom the Software is furnished to do so, subject to the +# following conditions: +# +# The above copyright notice and this permission notice shall be included +# in all copies or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS +# OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF +# MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN +# NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, +# DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR +# OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE +# USE OR OTHER DEALINGS IN THE SOFTWARE. # File containig the metadata and metastore executable. MSFILE=".file-metadata" diff --git a/reproduce/src/make/delete-me.mk b/reproduce/src/make/delete-me.mk index 2d93566..701a316 100644 --- a/reproduce/src/make/delete-me.mk +++ b/reproduce/src/make/delete-me.mk @@ -1,9 +1,6 @@ # Dummy Makefile to create a random dataset for plotting. # -# Original author: -# Mohammad Akhlaghi <mohammad@akhlaghi.org> -# Contributing author(s): -# Copyright (C) 2018-2019, Your Name. +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # This Makefile is free software: you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by the diff --git a/reproduce/src/make/dependencies-atlas-multiple.mk b/reproduce/src/make/dependencies-atlas-multiple.mk index e23a6b8..fef25c7 100755 --- a/reproduce/src/make/dependencies-atlas-multiple.mk +++ b/reproduce/src/make/dependencies-atlas-multiple.mk @@ -8,11 +8,7 @@ # # ------------------------------------------------------------------------ # -# Original author: -# Mohammad Akhlaghi <mohammad@akhlaghi.org> -# Contributing author(s): -# Your name <your@email.address> -# Copyright (C) 2019, Your Name. +# Copyright (C) 2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # This Makefile is free software: you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by the diff --git a/reproduce/src/make/dependencies-atlas-single.mk b/reproduce/src/make/dependencies-atlas-single.mk index 6f78f6d..dde2926 100755 --- a/reproduce/src/make/dependencies-atlas-single.mk +++ b/reproduce/src/make/dependencies-atlas-single.mk @@ -8,11 +8,7 @@ # # ------------------------------------------------------------------------ # -# Original author: -# Mohammad Akhlaghi <mohammad@akhlaghi.org> -# Contributing author(s): -# Your name <your@email.address> -# Copyright (C) 2019, Your Name. +# Copyright (C) 2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # This Makefile is free software: you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by the diff --git a/reproduce/src/make/dependencies-basic.mk b/reproduce/src/make/dependencies-basic.mk index 81a17cd..e3a5ab3 100644 --- a/reproduce/src/make/dependencies-basic.mk +++ b/reproduce/src/make/dependencies-basic.mk @@ -18,11 +18,7 @@ # # ------------------------------------------------------------------------ # -# Original author: -# Mohammad Akhlaghi <mohammad@akhlaghi.org> -# Contributing author(s): -# Your name <your@email.address> -# Copyright (C) 2018-2019, Your Name. +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # This Makefile is free software: you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by the diff --git a/reproduce/src/make/dependencies-build-rules.mk b/reproduce/src/make/dependencies-build-rules.mk index 5216488..2523f6a 100644 --- a/reproduce/src/make/dependencies-build-rules.mk +++ b/reproduce/src/make/dependencies-build-rules.mk @@ -3,11 +3,7 @@ # imported into `dependencies-basic.mk' and `dependencies.mk'. They should # be activated with Make's `Call' function. # -# Original author: -# Mohammad Akhlaghi <mohammad@akhlaghi.org> -# Contributing author(s): -# Your name <your@email.address> -# Copyright (C) 2018-2019, Your Name. +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # This Makefile is free software: you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by the diff --git a/reproduce/src/make/dependencies-python.mk b/reproduce/src/make/dependencies-python.mk index 7ccf6b3..ce1cd38 100644 --- a/reproduce/src/make/dependencies-python.mk +++ b/reproduce/src/make/dependencies-python.mk @@ -8,11 +8,8 @@ # # ------------------------------------------------------------------------ # -# Original author: -# Raul Infante-Sainz <infantesainz@gmail.com> -# Contributing author(s): -# Mohammad Akhlaghi <mohammad@akhlaghi.org> -# Copyright (C) 2019, Your Name. +# Copyright (C) 2019 Raul Infante-Sainz <infantesainz@gmail.com> +# Copyright (C) 2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # This Makefile is free software: you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by the diff --git a/reproduce/src/make/dependencies.mk b/reproduce/src/make/dependencies.mk index 67ce490..c237313 100644 --- a/reproduce/src/make/dependencies.mk +++ b/reproduce/src/make/dependencies.mk @@ -8,11 +8,7 @@ # # ------------------------------------------------------------------------ # -# Original author: -# Mohammad Akhlaghi <mohammad@akhlaghi.org> -# Contributing author(s): -# Your name <your@email.address> -# Copyright (C) 2018-2019, Your Name. +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # This Makefile is free software: you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by the diff --git a/reproduce/src/make/download.mk b/reproduce/src/make/download.mk index 036332b..28ee5ff 100644 --- a/reproduce/src/make/download.mk +++ b/reproduce/src/make/download.mk @@ -5,11 +5,7 @@ # recipes in this Makefile all use a single file lock to have one download # script running at every instant. # -# Original author: -# Mohammad Akhlaghi <mohammad@akhlaghi.org> -# Contributing author(s): -# Your name <your@email.address> -# Copyright (C) 2018-2019, Your Name. +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # This Makefile is free software: you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by the diff --git a/reproduce/src/make/initialize.mk b/reproduce/src/make/initialize.mk index 4e59712..f9e054f 100644 --- a/reproduce/src/make/initialize.mk +++ b/reproduce/src/make/initialize.mk @@ -1,10 +1,6 @@ # Initialize the reproduction pipeline. # -# Original author: -# Mohammad Akhlaghi <mohammad@akhlaghi.org> -# Contributing author(s): -# Your name <your@email.address> -# Copyright (C) 2018-2019, Your Name. +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # This Makefile is free software: you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by the diff --git a/reproduce/src/make/paper.mk b/reproduce/src/make/paper.mk index d148c08..86cf114 100644 --- a/reproduce/src/make/paper.mk +++ b/reproduce/src/make/paper.mk @@ -1,10 +1,6 @@ # Build the final PDF paper/report. # -# Original author: -# Mohammad Akhlaghi <mohammad@akhlaghi.org> -# Contributing author(s): -# Your name <your@email.address> -# Copyright (C) 2018-2019, Your Name. +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # This Makefile is free software: you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by the diff --git a/reproduce/src/make/top.mk b/reproduce/src/make/top.mk index 9b81a58..14bdbf3 100644 --- a/reproduce/src/make/top.mk +++ b/reproduce/src/make/top.mk @@ -1,10 +1,6 @@ # A ONE-LINE DESCRIPTION OF THE WHOLE PIPELINE # -# Original author: -# Mohammad Akhlaghi <mohammad@akhlaghi.org> -# Contributing author(s): -# Your name <your@email.address> -# Copyright (C) 2018-2019, Your Name. +# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # This Makefile is free software: you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by the diff --git a/tex/dependencies/astropy.tex b/tex/dependencies/astropy.tex index f77799e..450212d 100644 --- a/tex/dependencies/astropy.tex +++ b/tex/dependencies/astropy.tex @@ -1,4 +1,4 @@ -%% Copyright (C) 2019, Mohammad Akhlaghi. +%% Copyright (C) 2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> %% %% Copying and distribution of this file, with or without modification, %% are permitted in any medium without royalty provided the copyright @@ -94,4 +94,4 @@ archivePrefix = "arXiv", doi = {10.1051/0004-6361/201322068}, adsurl = {http://adsabs.harvard.edu/abs/2013A\%26A...558A..33A}, adsnote = {Provided by the SAO/NASA Astrophysics Data System} -}
\ No newline at end of file +} diff --git a/tex/dependencies/cython.tex b/tex/dependencies/cython.tex index de30273..110cb19 100644 --- a/tex/dependencies/cython.tex +++ b/tex/dependencies/cython.tex @@ -1,4 +1,4 @@ -%% Copyright (C) 2019, Raul Infante-Sainz. +%% Copyright (C) 2019 Raul Infante-Sainz <infantesainz@gmail.com> %% %% Copying and distribution of this file, with or without modification, %% are permitted in any medium without royalty provided the copyright @@ -18,4 +18,4 @@ doi = {10.1109/MCSE.2010.118}, adsurl = {http://adsabs.harvard.edu/abs/2011CSE....13b..31B}, adsnote = {Provided by the SAO/NASA Astrophysics Data System} -}
\ No newline at end of file +} diff --git a/tex/dependencies/gnuastro.tex b/tex/dependencies/gnuastro.tex index 6195145..91788c9 100644 --- a/tex/dependencies/gnuastro.tex +++ b/tex/dependencies/gnuastro.tex @@ -1,4 +1,4 @@ -%% Copyright (C) 2019, Mohammad Akhlaghi. +%% Copyright (C) 2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> %% %% Copying and distribution of this file, with or without modification, %% are permitted in any medium without royalty provided the copyright @@ -21,4 +21,4 @@ archivePrefix = "arXiv", doi = {10.1088/0067-0049/220/1/1}, adsurl = {http://adsabs.harvard.edu/abs/2015ApJS..220....1A}, adsnote = {Provided by the SAO/NASA Astrophysics Data System} -}
\ No newline at end of file +} diff --git a/tex/dependencies/matplotlib.tex b/tex/dependencies/matplotlib.tex index 630ebc9..8578899 100644 --- a/tex/dependencies/matplotlib.tex +++ b/tex/dependencies/matplotlib.tex @@ -1,4 +1,4 @@ -%% Copyright (C) 2019, Raul Infante-Sainz. +%% Copyright (C) 2019 Raul Infante-Sainz <infantesainz@gmail.com> %% %% Copying and distribution of this file, with or without modification, %% are permitted in any medium without royalty provided the copyright @@ -19,4 +19,4 @@ publisher = {IEEE COMPUTER SOC}, doi = {10.1109/MCSE.2007.55}, year = 2007 -}
\ No newline at end of file +} diff --git a/tex/dependencies/mpi4py.tex b/tex/dependencies/mpi4py.tex index e238c78..4e0045f 100644 --- a/tex/dependencies/mpi4py.tex +++ b/tex/dependencies/mpi4py.tex @@ -1,4 +1,4 @@ -%% Copyright (C) 2019, Raul Infante-Sainz. +%% Copyright (C) 2019 Raul Infante-Sainz <infantesainz@gmail.com> %% %% Copying and distribution of this file, with or without modification, %% are permitted in any medium without royalty provided the copyright @@ -17,4 +17,4 @@ doi = {10.1016/j.advwatres.2011.04.013}, adsurl = {http://adsabs.harvard.edu/abs/2011AdWR...34.1124D}, adsnote = {Provided by the SAO/NASA Astrophysics Data System} -}
\ No newline at end of file +} diff --git a/tex/dependencies/numpy.tex b/tex/dependencies/numpy.tex index fb54b8f..0d9028f 100644 --- a/tex/dependencies/numpy.tex +++ b/tex/dependencies/numpy.tex @@ -1,4 +1,4 @@ -%% Copyright (C) 2019, Raul Infante-Sainz. +%% Copyright (C) 2019 Raul Infante-Sainz <infantesainz@gmail.com> %% %% Copying and distribution of this file, with or without modification, %% are permitted in any medium without royalty provided the copyright @@ -20,4 +20,4 @@ archivePrefix = "arXiv", doi = {10.1109/MCSE.2011.37}, adsurl = {http://adsabs.harvard.edu/abs/2011CSE....13b..22V}, adsnote = {Provided by the SAO/NASA Astrophysics Data System} -}
\ No newline at end of file +} diff --git a/tex/dependencies/scipy.tex b/tex/dependencies/scipy.tex index 4527a7c..60500d2 100644 --- a/tex/dependencies/scipy.tex +++ b/tex/dependencies/scipy.tex @@ -1,4 +1,4 @@ -%% Copyright (C) 2019, Raul Infante-Sainz. +%% Copyright (C) 2019 Raul Infante-Sainz <infantesainz@gmail.com> %% %% Copying and distribution of this file, with or without modification, %% are permitted in any medium without royalty provided the copyright @@ -31,4 +31,4 @@ doi = {10.1109/MCSE.2007.58}, ISSN = {1521-9615}, month = {May}, -}
\ No newline at end of file +} diff --git a/tex/src/delete-me-demo.tex b/tex/src/delete-me-demo.tex index 2575e61..abd45f6 100644 --- a/tex/src/delete-me-demo.tex +++ b/tex/src/delete-me-demo.tex @@ -1,9 +1,6 @@ %% Plot the demonstration image and its histogram. % -%% Original author: -%% Mohammad Akhlaghi <mohammad@akhlaghi.org> -%% Contributing author(s): -%% Copyright (C) 2019, Mohammad Akhlaghi. +%% Copyright (C) 2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> % %% This template is free software: you can redistribute it and/or modify it %% under the terms of the GNU General Public License as published by the diff --git a/tex/src/delete-me.tex b/tex/src/delete-me.tex index 1382b66..12fd3b7 100644 --- a/tex/src/delete-me.tex +++ b/tex/src/delete-me.tex @@ -1,9 +1,6 @@ %% PGFPlots code to plot a random set of numbers as demo %% -%% Original author: -%% Mohammad Akhlaghi <mohammad@akhlaghi.org> -%% Contributing author(s): -%% Copyright (C) 2019, Mohammad Akhlaghi. +%% Copyright (C) 2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> % %% This template is free software: you can redistribute it and/or modify it %% under the terms of the GNU General Public License as published by the diff --git a/tex/src/preamble-biblatex.tex b/tex/src/preamble-biblatex.tex index 602c5a1..b4c02f9 100644 --- a/tex/src/preamble-biblatex.tex +++ b/tex/src/preamble-biblatex.tex @@ -12,10 +12,7 @@ %% helps in clearly identifying the files and avoiding places that %% complain about `.bib' files. % -%% Original author: -%% Mohammad Akhlaghi <mohammad@akhlaghi.org> -%% Contributing author(s): -%% Copyright (C) 2018-2019, Mohammad Akhlaghi. +%% Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> % %% This template is free software: you can redistribute it and/or modify it %% under the terms of the GNU General Public License as published by the diff --git a/tex/src/preamble-header.tex b/tex/src/preamble-header.tex index b2ca364..ce9f93e 100644 --- a/tex/src/preamble-header.tex +++ b/tex/src/preamble-header.tex @@ -1,10 +1,7 @@ %% The headers: title, authors, top of pages and section title formatting %% of the final LaTeX file are configured here. % -%% Original author: -%% Mohammad Akhlaghi <mohammad@akhlaghi.org> -%% Contributing author(s): -%% Copyright (C) 2018-2019, Mohammad Akhlaghi. +%% Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> % %% This template is free software: you can redistribute it and/or modify it %% under the terms of the GNU General Public License as published by the diff --git a/tex/src/preamble-necessary.tex b/tex/src/preamble-necessary.tex index cdb6137..2abcb9e 100644 --- a/tex/src/preamble-necessary.tex +++ b/tex/src/preamble-necessary.tex @@ -4,10 +4,7 @@ %% LaTeX usages. However, if any are not needed in your work, please feel %% free to remove them. % -%% Original author: -%% Mohammad Akhlaghi <mohammad@akhlaghi.org> -%% Contributing author(s): -%% Copyright (C) 2018-2019, Mohammad Akhlaghi. +%% Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> % %% This template is free software: you can redistribute it and/or modify it %% under the terms of the GNU General Public License as published by the diff --git a/tex/src/preamble-pgfplots.tex b/tex/src/preamble-pgfplots.tex index cd68658..bf6bbbd 100644 --- a/tex/src/preamble-pgfplots.tex +++ b/tex/src/preamble-pgfplots.tex @@ -40,10 +40,7 @@ %% hasn't changed since the last build. TiKZ/PGFPlots won't rebuild the %% plot. % -%% Original author: -%% Mohammad Akhlaghi <mohammad@akhlaghi.org> -%% Contributing author(s): -%% Copyright (C) 2018-2019, Mohammad Akhlaghi. +%% Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> % %% This template is free software: you can redistribute it and/or modify it %% under the terms of the GNU General Public License as published by the diff --git a/tex/src/preamble-style.tex b/tex/src/preamble-style.tex index 54f3598..0c97151 100644 --- a/tex/src/preamble-style.tex +++ b/tex/src/preamble-style.tex @@ -6,10 +6,7 @@ %% style defined here as a preamble. To ignore it, uncomment or delete the %% respective line in `paper.tex'. %% -%% Original author: -%% Mohammad Akhlaghi <mohammad@akhlaghi.org> -%% Contributing author(s): -%% Copyright (C) 2019, Mohammad Akhlaghi. +%% Copyright (C) 2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> % %% This template is free software: you can redistribute it and/or modify it %% under the terms of the GNU General Public License as published by the diff --git a/tex/src/references.tex b/tex/src/references.tex index de4682f..6f884df 100644 --- a/tex/src/references.tex +++ b/tex/src/references.tex @@ -1,8 +1,8 @@ -%% Copyright (C) 2018-2019, Mohammad Akhlaghi. -% %% Non-software BibTeX entries. The software-specific BibTeX entries are %% stored in a `*.tex' file under the `tex/dependencies' directory. % +%% Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> +% %% Copying and distribution of this file, with or without modification, %% are permitted in any medium without royalty provided the copyright %% notice and this notice are preserved. This file is offered as-is, |