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| author | Raul Infante-Sainz <infantesainz@gmail.com> | 2019-04-02 16:26:43 +0100 |
|---|---|---|
| committer | Raul Infante-Sainz <infantesainz@gmail.com> | 2019-04-02 16:26:43 +0100 |
| commit | f0030ea8974b41ef4b26c3ce41c3294b224fb358 (patch) | |
| tree | 56b6051d54c14e2b8fb34bf38d6c14dfa73c9768 /reproduce/src/make/dependencies-python.mk | |
| parent | d26372bb074b1e4ac5ff758d7716129975fe4963 (diff) | |
Numpy and Scipy using OpenBLAS instead of ATLAS
We could not get ATLAS shared libraries on Mac (while the static ATLAS
libraries are built and can be used successfully on Mac). So, the
pipeline now builds OpenBLAS, which both Numpy and Scipy can use on Mac
and GNU/Linux.
We also added FFTW as a dependency of Numpy. Altough Numpy is not linking to
FFTW for some reason. However, since FFTW is a low level library used by
many programs, we have kept it as a dependency of Numpy anyway for now.
Diffstat (limited to 'reproduce/src/make/dependencies-python.mk')
| -rw-r--r-- | reproduce/src/make/dependencies-python.mk | 24 |
1 files changed, 16 insertions, 8 deletions
diff --git a/reproduce/src/make/dependencies-python.mk b/reproduce/src/make/dependencies-python.mk index c7f861b..642316c 100644 --- a/reproduce/src/make/dependencies-python.mk +++ b/reproduce/src/make/dependencies-python.mk @@ -43,10 +43,7 @@ ilidir = $(BDIR)/dependencies/installed/lib/built ipydir = $(BDIR)/dependencies/installed/lib/built/python # Define the top-level programs to build (installed in `.local/bin'). -ifneq ($(on_mac_os),yes) -withscipy=scipy -endif -top-level-python = astroquery matplotlib $(withscipy) +top-level-python = astroquery matplotlib all: $(foreach p, $(top-level-python), $(ipydir)/$(p)) # Other basic environment settings: We are only including the host @@ -328,7 +325,8 @@ $(ipydir)/astroquery: $(tdir)/astroquery-$(astroquery-version).tar.gz \ $(ipydir)/astropy: $(tdir)/astropy-$(astropy-version).tar.gz \ $(ipydir)/h5py \ - $(ipydir)/numpy + $(ipydir)/numpy \ + $(ipydir)/scipy $(call pybuild, tar xf, $<, astropy-$(astropy-version)) $(ipydir)/beautifulsoup4: $(tdir)/beautifulsoup4-$(beautifulsoup4-version).tar.gz \ @@ -398,8 +396,14 @@ $(ipydir)/matplotlib: $(tdir)/matplotlib-$(matplotlib-version).tar.gz \ $(call pybuild, tar xf, $<, matplotlib-$(matplotlib-version)) $(ipydir)/numpy: $(tdir)/numpy-$(numpy-version).zip \ - $(ipydir)/setuptools - export LDFLAGS="$$LDFLAGS -shared"; \ + $(ipydir)/setuptools \ + $(ilidir)/openblas \ + $(ilidir)/fftw + if [ x$(on_mac_os) = xyes ]; then \ + export LDFLAGS="$(LDFLAGS) -undefined dynamic_lookup -bundle"; \ + else \ + export LDFLAGS="$(LDFLAGS) -shared"; \ + fi; \ conf="$$(pwd)/reproduce/config/pipeline/dependency-numpy-scipy.cfg"; \ $(call pybuild, unzip, $<, numpy-$(numpy-version),$$conf) @@ -430,7 +434,11 @@ $(ipydir)/requests: $(tdir)/requests-$(requests-version).tar.gz \ $(ipydir)/scipy: $(tdir)/scipy-$(scipy-version).tar.gz \ $(ipydir)/numpy - export LDFLAGS="$$LDFLAGS -shared"; \ + if [ x$(on_mac_os) = xyes ]; then \ + export LDFLAGS="$(LDFLAGS) -undefined dynamic_lookup -bundle"; \ + else \ + export LDFLAGS="$(LDFLAGS) -shared"; \ + fi; \ conf="$$(pwd)/reproduce/config/pipeline/dependency-numpy-scipy.cfg"; \ $(call pybuild, tar xf, $<, scipy-$(scipy-version),$$conf) |