IMPORTANT: Software update

SUMMARY: This is a software update to make Maneage more portable and up to
date. It does not involve any Maneage infrastructure changes. You should
just re-build your project to make sure the updated software haven't
removed/changed any of their features that you were using. In particular,
for Astrometry.net users, please see the respective note in P.S.2 below.

Until now, there have been many updates in the software that are built
within Maneage. The last software upadte was almost one year ago.

With this commit, the software in the P.S.1 have been updated. A
description of notable changes in the software environment is given in
P.S.2. This software environment has been tested on an Arch GNU/Linux,
Debian, CentOS-7 and macOS.

This commit is the merging of 24 individual commits by Raul Infante-Sainz
(who put a lot of energy on porting the software below for macOS, and
updating citations), Boudewijn Roukema (who helped with memory checking for
GCC, and testing on Debian and CentOS), Sepideh Eskandarlou (who tested the
environment) and myself.

Besides the updates in the core software, the followimg improvements have
also been implemented in this commit:

 - When you run './project shell':

   - A welcome message is printed that will remind the caller that they
     have entered a new environment, it will print the location of 'HOME'
     and the location of the shell startup file.

   - The 'reproduce/software/shell/bashrc.sh' is loaded as a startup
     file. This allows you to customize your interactive Maneage shell. A
     default step has already been placed there that will put the git
     branch name (in green) within the shell prompt (which was
     purple). This greatly helps when dealing with directories under Git
     version control. These settings won't bother with Maneage's default
     operations: through environment variables we make sure that these
     './project shell' features will not slow-down the calls to the shell
     within the non-interactive Make calls.

   - The host's 'COLORTERM' is passed to the Maneage environment. It is
     used by some programs that can have color outputs on the terminal.

 - Updates to citations:
   - Numpy and Scipy (as requested on their pages):
     https://numpy.org/citing-numpy and https://scipy.org/citing-scipy
   - Gnuastro: Added https://arxiv.org/abs/1909.11230 which describes major
     updates to Gnuastro after 10 releases.
   - When a software's paper is indexed in the SAO/NASA Astrophysics Data
     System (ADS), Maneage now use the BibTeX entries provided by ADS. This
     helps to give a unified format to most software, and more information
     (like ADS+arXiv hyperlinks in the BibLaTeX compilation of the default
     bibliography).

 - We were able to build this version of Maneage on a Debian system from
   2010 (+12 years ago!). Only three downgrades were necessary in the
   "basic" software (not affecting the high-level science software!). A
   description of the necessary downgrades for such old systems has been
   added in 'README.md'.

P.S.1 List of updated software:

 Basic software:
   cURL                                7.79.1    -->  7.84.0
   Dash                                0.5.11.5  -->  0.5.11-057cd65
   File                                5.41      -->  5.42
   GNU AWK                             5.1.0     -->  5.1.1
   GNU Bash                            5.1.8     -->  5.2-rc2
   GNU Binutils                        2.37      -->  2.39
   GNU Compiler Collection (GCC)       11.2.1    -->  12.1.0
   GNU Findutils                       4.8.0     -->  4.9.0
   GNU Gzip                            1.11      -->  1.12
   GNU Help2man                        1.48.5    -->  1.49.2
   GNU Integer Set Library (ISL)       0.18      -->  0.24
   GNU Libtool                         2.4.6     -->  2.4.7
   GNU Nano                            6.0       -->  6.4
   GNU Readline                        8.1.1     -->  8.2-rc2
   GNU libiconv                        0.16      -->  0.17
   Git                                 2.36.0    -->  2.37.1
   OpenSSL                             3.0.0     -->  3.0.5
   PatchELF                            0.13      -->  0.15.0
   Perl                                5.34.0    -->  5.36.0

 High-level software:
   Astrometry.net                      0.89      -->  0.91
   CFITSIO                             4.0.0     -->  4.1.0
   CMake                               3.21.4    -->  3.24.0
   GNU Astronomy Utilities (Gnuastro)  0.16.1    -->  0.18
   GPL Ghostscript                     9.55.0    -->  9.56.1
   HDF5                                1.10.5    -->  1.13.1
   Libjpeg                             9d        -->  9e
   Libtiff                             4.3.0     -->  4.4.0
   OpenBLAS                            0.3.18    -->  0.3.21
   PLplot                              n/a       -->  5.15.0
   Python                              3.10.0    -->  3.10.6
   SCAMP                               2.6.7     -->  2.10.0
   SWarp                               2.38.0    -->  2.41.5
   Util-Linux                          2.37.2    -->  2.38.1
   Vim                                 8.2       -->  9.0
   WCSLIB                              7.7       -->  7.11

 X.org packages (used by graphical software like Ghostscript and LaTeX):
   Fontconfig                          2.13.94   -->  2.14.0
   LibX11                              1.7.2     -->  1.8
   LibXCB                              1.14      -->  1.15
   XCB-proto                           1.14.1    -->  1.15
   Xorg-proto                          2021.5    -->  2022.1

 Python modules:
   Astropy                             5.0       -->  5.1
   GalSim                              2.3.3     -->  2.3.5

P.S.2: Notable points regarding the software environment:

 - Two new links from the host's low-level tools are now included in
   Maneage's build environment:
   - On GNU/Linux systems, the host's 'ldd' is linked inside the custom
     environment. This belongs to the GNU C Library (which is not yet
     installed in Maneage). But helps in checking the linking status of the
     binaries on GNU/Linux systems.
   - On macOS: the 'codesign' binary is included, which is used by GNU
     Emacs on macOS to sign the built executable.

 - GNU Bison has been moved in basic software (necessary for GNU Binutils).

 - The Zip and Unzip programs have been moved as high-level software that
   have to be manually requested when necessary. This is because they are
   not used by any of the basic software anymore. They were just installed
   as dependencies of GNU Tar to be close the other compression
   programs. Also, in the past we would use the original tarballs, and some
   (for example Numpy) were distributed in Zip format. However, by default,
   we now use a custom Lzip tarball and don't need Zip or Unzip. This was
   suggested by Zahra Sharbaf and Raul Infante-Sainz.

 - Some minor edits in 'reproduce/software/shell/tarball-prepare.sh'. In
   particular the 'awk' command was effectively just replacing a '_' with
   '-', so it just uses a simple SED expression instead.

 - Fixed bug 62700 (https://savannah.nongnu.org/bugs/index.php?62700) by
   compiling 'xz' with a patched version of the xz source file
   'src/liblzma/liblzma.map'.

 - Astrometry.net doesn't depend on NetPBM any more. NetPBM (and its
   dependencies) were causing many crashes on macOS and it also a very
   strange build system that is hard to maintain. Astrometry.net uses it to
   take images as input. However, it isn't necessary when you provide
   Astrometry.net with a catalog. Therefore, Raul added some instructions
   on how to run astrometry from your own custom X-Y catalog. These
   instruction can be seen on top of the build rule of Astrometry.net in
   'reproduce/software/make/high-level.mk'.

 - h5py has been removed as a dependency of Astropy. It is an optional
   dependency to write tables into HDF5 format. But since we couldn't get
   it to build on macOS it has been removed. None of the current Maneage
   users/developers also use this feature of Astropy!

 - PLplot is added a new software, but not a default pre-requisite of SCAMP
   (which can use it to generate figures), because there were many build
   problems on macOS. Instructions have been added on top of SCAMP on how
   to add PLplot as a dependency.

 - With the aim of being able to install Plplot on macOS, we have wrote
   several lines to fix header problems. However, we didn't succeed. In any
   case we are leaving these lines in case they are useful in the future.

 - The '-Wno-nullability-completeness' compiler flag (which is primarily
   necessary for macOS) is now only added for macOS systems. It was causing
   many warnings of un-recognized option in GNU/Linux systems.

 - The 'mkswap' program of Util-Linux has been disabled because it caused
   crashes on older kernels. Generally, its not necessary for a Maneage
   project because it needs root permissions to run!

 - LibXT (of the x.org software) has been added as a dependency of Cairo.

 - ImageMagick and Lzip were using the host's C++ standard library! But on
   GNU/Linux we build our own C++ Standard Library with GCC, so with this
   commit, they properly link with Maneage's C++ standard library.

 - ImageMagick on macOS couldn't properly link with Maneage's Ghostscript
   library! This has been fixed using macOS's install_name_tool.

 - Necessary RAM to build GCC on GNU/Linux systems changed to ~8GB, see
   https://savannah.nongnu.org/task/?16244#comment12

 - Pythran is no longer as prerequisite of Scipy. Until now, Pythran was a
   prerequisite of Scipy. But we noticed that it is optional and was
   causing problems on macOS.

 - The URLs of some of the software have been updated in
   'reproduce/software/config/urls.conf'. By default, these are all
   commented, but they can be useful when searching for new versions or
   when a project needs custom software that is not (yet) in Maneage.

4 files changed, 128 insertions, 112 deletions

diff --git a/reproduce/software/config/TARGETS.conf b/reproduce/software/config/TARGETS.conf
index ef95f57..5e45abf 100644
--- a/reproduce/software/config/TARGETS.conf
+++ b/reproduce/software/config/TARGETS.conf
@@ -36,10 +36,10 @@
 
 
 # Programs and libraries (for Python or R modules, use respective variable).
-top-level-programs  = gnuastro
+top-level-programs = gnuastro
 
 # Python libraries/modules.
-top-level-python    =
+top-level-python =
 
 # R libraries/modules
 # [For developers 2022-01-02: 'r-cran-cowplot r-cran-gridExtra' for all]
diff --git a/reproduce/software/config/checksums.conf b/reproduce/software/config/checksums.conf
index 736a5e5..cc7e2de 100644
--- a/reproduce/software/config/checksums.conf
+++ b/reproduce/software/config/checksums.conf
@@ -15,28 +15,28 @@
 
 # Basic/low-level programs and libraires (installed in any case)
 # --------------------------------------------------------------
-bash-checksum = 409843172032fbe7ef50004ddc30934e12d864e30935fa501dd8a2792c0c12c9c00e1108c05a95ba84b5ab4dd146d92e793b684df1f49ba51eba40f39d47f14d
-binutils-checksum = f3c10d8aeb50872278ece6ad31f7369bf12b2d09618812322b35e6750024b45f77fc32d498a9c579df3c152ce3da382f480281743eb5b53639aa287b7166aba3
+bash-checksum = 2ce67af3ff6b6c9d87b2e98986da937ee100a4cecefd50f01ccdbaeb53e45ff80b1e84d5861619dd3058259223a1f0748e5850aa2dab13b3350fb8a955c3024e
+binutils-checksum = 028c64a9ac34def97ddb4ead355776999c4e3376857e865c536ed74593292437f5bd2049c036a506129f596ba78898b0cefec5c677b6cd76e7d18dfac9c64a33
 bzip2-checksum = 929cb1b2d0db8a505e2bafe3ce2c893c8f132dd617c0110e86e19f116b570a85de3c8a635483b530456fc8f8b6698c8190d21313e47607f442807b10489ac86e
 cert-checksum = 25b689ebac01ebde136bcef1ef4aa18389fcc618375755001f153b37060cfb327fd6d6afac25d4ddfcf78fd6678fa00ce49ba688e725e4a4c657c37cba4ec3ca
 coreutils-checksum = 887ca0ea9e6918c9e959033e625537335902a118af8384a050bbdfadf1c7fa30a92521dd4d9714055d869c1619c20f0f6bcecb89a99f22278a74668b393a5cf0
-curl-checksum = af977f4ea4b096d3de8d116cfe4f8abbfe5dad487745b6fbc1b13c2669d2bcfdcafa44c9c4cf89c4fb413b3c0986d4e25ae107d461e6295bf469ae3cbc31bb67
-dash-checksum = d8533e3fb29ab00369ee0e4f700a2e5ac2fc11a7c51d83fb93dbbe25d1e06b73718f6f583e368bd232edde41b03b53493657e81dc2e0ce439a9da8e1ed627923
+curl-checksum = 9158e35f1f8bee8236df933b0011bc1865bcf10182725b9578824abbfa9cc4dc1e468ab97a5c30bb791cba23e224e395189a6a70b314a500dac1222e4bf21908
+dash-checksum = 794290f8270f05a134966088af5a7f5abd5c7a06e7057108aa49ad18af43643a038cd926192b81cfc9169d9d419b03c9e815483936bbaf102fe7a462f84f358d
 diffutils-checksum = 597cd0a14087722b78469e2238fcee25e78108f53ca43fbff1194d87625b4c7498a205f68c7bb44fcd437b8d642bba263ac40170780aede006076b11956fd06e
-file-checksum = f1cc951f8972073aa8d29842858d653ecf890e18840d29b848e3b7ac717b2cebe41091415f38cfda1e0d8d066d9e8200ca8a94b5a77f96b8a9b952a9a567284c
-findutils-checksum = a330ace9e7af668b5294c231f9fb45f23c1345d770d67d047d280cd1c6c0fe01f248ccd9877c170bebe8471618261e09a3d64909bb094c73584928005027d58e
+file-checksum = 22acda3d760fa19f94c67086ae5ea8243afbc896be10d3905b92610fe58cdc5954ce4f6756a2cc2a2c241572c37a56b4d6813b14a37f51d718314c6dc9b201fb
+findutils-checksum = 8f1887781e3f97aec1144dbda6da9590489ffb7dd28e47a5c574c0382398988f015a6f4364b90a66a9e35b3c0e79d8a71c573402b3f95f7f9482f2d47687a4a9
 flock-checksum = f711815035e21b46572bf80e730a55822e5abf4cb29749e476ee6cf4d5027e9a7deeacf5f6b8c37f18f17a0cc7a6d98fb0be3936e97b122707f1cb2306d1e1d9
-gawk-checksum = 682fadd3630d51d13d19443a9a93d4cba1bd6802dd078f1366f17f39d3fa5800f47037b103d742be9254475fdc251d90626f95a2e04b5ace117cfaecebca2281
-gcc-checksum = 7f9605b9527799f92b3251968f63e53bd0b74880952f0cbc58ade9b4eee60bac4990ad408c1a6067f7aa36225709061106f0d93bc581ec97711fc5ff6ae15127
+gawk-checksum = 60a9fb36e57c0819576f5b2e48b0cf82210dd0cc45f65529c15d53ae66f8d0674929434bd7ed6fa4beaafc81c6b0ccd8c56d21b5326f7b03dcf958cafca03c3a
+gcc-checksum = be8a7e21fb7ee3be80b814708d6ffb63093fa103a51eb736b3717ac506ed4afcc7571bfe0d475f072e82bed439225d20c07e5d1bbf449a9bc4e10b82e4d8dead
 gettext-checksum = f3083af79341bfdc849118333c1598812c12bc225d998181694648187088050160deb4777c252f72a7158e914c2967416489bc6167ef8505664497f2fb94ecbf
-git-checksum = fe41fca911b3f276ac0832c059054c3f51fcc97862d23d47b5bc813a766ef31f431595553f62655360766427ae65debf09f6e2ded318bc8062de2410c359eb51
+git-checksum = 2ade8fe6e9bbc88ebfe72348b13e7c68acbd066dfd6bcdd0de4949ec22aa25d02246efb25e7a7868eef1739c8e8cc7bb73c4caffe0060046bbf738f601eac2a7
 gmp-checksum = 2bec8840bceaeac542ce1f7870d5b971b631b055b49751ba4f78f98229d7eb9cd97c0a668f6d7cf81a53bf0b3d5d70e682af523f8f0eee0d7390727ff2bbb271
 grep-checksum = e8c28da23fcef11825c54794b3eebffd0eaf84b7ebf5e187fd06b5d4aeff2af1ac097f0166151b3f11f332dc72abf6097188d578f549496f4c7c96ccf479a61e
-gzip-checksum = 48db13116543ffff39ce03a058e5ca279d93581b8aead3b857c41b0aa3028aa787d5bb21ee18d002565ba3e016fed60d55062b3fd91c41a9877f9f7febc6ae27
-isl-checksum = 00821ccdde36540869b47b1f68837183dfc8eb0ae580a36ba92c25308618a25680adc8de7b9df4d93851b300d7e457c931e7ff3a40fa90e336c74bcab3504e41
+gzip-checksum = 43bfed5da4f376f9ee295fb505648e364bd85d38c22f0de79024e5fd2b7e341f7fef8fed0d49a0f0484164fb5c6ce02b1b1951891807bc2b50e1a3e8f7990548
+isl-checksum = e257c19d861da6615c0be303bd8800d5e1a1c71595126da573c7a8d91fea6c41b9cacc2378caf5272949c6719c8835584a6c7fd05246bf4ffe56031543f648e3
 less-checksum = 31f733ecf4170b4f5dcf467b902d0753833f852739b03bf611137aea3672c03e00e9418fd5e289e82624c2dd42b0de06cb65a7a637dae78e7647e5c6ecf9fb57
-libiconv-checksum = 396be5305f899619596b72ccc8a192c5fcc8e12163fd23376833c957ee44dbf3d39461360bf7e32a049f9f12a851da7836bfc8a62842114fc10717ac92762987
-libtool-checksum = 379a16baf2123d3cdd28cf8e35e4bb1e0326ae7f431c42ab2a3bd42ccac99a622e5ff0a68703b81614c147bc02178612a5cecb105b8943937a05c0b3ec91fea0
+libiconv-checksum = 01e1b073ae6a82320d8759c973ca27c217377f2afd7a27f52f944d1d6e9079e407a7a4d2352f6b38541e49a85cb27dd39ce2f5f74f44ff42775901cda72e1159
+libtool-checksum = e0bdf6194e77beff0273a487b6345a0707addf1c7f57c35663550c5ef6f41dfcadaaac9df30ada639f5c066fa17a4ce7155bbfc0c920e1a1eadd55dae8183754
 libunistring-checksum = f1e92717fc043c2d7c454e44700559b0bd75457fdf3da5e803d9d58d8ebdff261bc73f380f6350bb04ce04071687c0317d09b4e8615003187948be1cd4d0bab3
 libxml2-checksum = 0fdc16aa7536adfe1deaadd19cdc20101dd3b081bd0a2e59d8ecc2965b2ef4c30d2e2447ab5b0cdb861c57ddb89ace1bd4ce120d9436b751b37724a90981ba8c
 lzip-checksum = 9b18ab9b7ef9a7d1c2da06b48fd018399e94405a5ada457885b778c59caa3faed0e73e1da398516621dc9e721587785b57ef1f8a12c1b0e116ebce5129f0f24d
@@ -44,14 +44,14 @@ m4-checksum = 7f8845f99e64d6a45859b9d80b03352a5526b3de0311ca4d6dd6850e504d26dfc9
 make-checksum = ddf0fdcb9ee1b182ef294c5da70c1275288c99bef60e63a25c0abed2ddd44aba1770be4aab1db8cac81e5f624576f2127c5d825a1824e1c7a49df4f16445526b
 mpc-checksum = 85e044749c2a001a70af2c11fc4bac58709ca7df11bf6da3b03cca852ef336eb37c4fb1dafdffde2d13df35caa7c296a7cba19a4625b82dc3cccc5066ac95774
 mpfr-checksum = 23a30040511809b6a8ed33d5ef83f903e987f0e4b8e87c9bfa627fdf0ca6400330bda4fd727cf1d37f04f7804c77663ed983c6b5ed26f5d5bd772bf13f1f9eb5
-nano-checksum = e1ae28710ce05ef9c73357b9fb556fa6a7e670ae6fd786339677cb8a154446029dd9c4ead4eeab014691e941211a2d2c9faefc7695d1b97c2b8b445ba77ff067
+nano-checksum = 0995899c5bae17411461870d5a5fc61da43679938cd2bf909ae96a0e3ecd3f47319f57397983ef53abe076c34147ec77eb87de0167ce17d1933fddd95983e0a9
 ncurses-checksum = 68b7c0388304791ce82ab86ea5c5725357f07bbae0c230af3e4722f75617778b6e28d1f0c1d65871379670e54fcc96ecd54f529a3462d207f3d930e6dad5a2dd
-openssl-checksum = f913eb1f654f702161e524a02ccdd028e26d418f26e334069d77ee0134f094809d5c86bfd65e8d05c9bf3d4f10d58a9f3c4452c8d6120741a90541114d82d5b6
+openssl-checksum = 722588b8d9f8b7a1c607475f441c47a7097b12f1885a471767424c7509103589a9e2647b5da35f5218fac6edee5c7946e4f2eb6962b434b14142330cf7403ef1
 patchelf-checksum = f74409c00e7e50a88590267fa0c173f71239f1471985792f7bcdab750d202a9a25383c015987608bbcd6ace5b3642645d46dba63199ba54fabbcb51ae7fca8f6
-perl-checksum = 47c37f2698d7f46d2bd8a19abfd329ed58509a9eeb6c9ddb32e435434fcacd5b70419c01d0fa10d1c599cf43248ebc1538076e6bdedc56624fac887d480b8b8d
+perl-checksum = 0cb49a0891ed0b8963093556af232b424d97eea5af659b00a6781c1de446da730a318c5d75d1d8cb7d7572cd4adb1423e4b9019bad96aa17da0de28a19f36399
 pkgconfig-checksum = c37ab9336ac15a73bf5a23101f3fd8a04810f39b0679634e420e5d7bbd60a80cfc919122694cf83965beb071d2780681efc8d954ce99d77eb235a4dc7497e250
 podlators-checksum = c653205fd1e8e570750584cdb3a813a1250ae6f66d4e654b3521b80052867a3a6ba15ad3d7c8a22065f1febc36175257f9b5685570fcf0a87908c2dc9d42cb3d
-readline-checksum = 90d9571609b90f07573f831878f5131df17f1baabc064398c95915f13d44ea0907e41218be089377523751ca5b02a8486b5306ef6d0245432a0c224b7aa7fb94
+readline-checksum = e7afacba7da0ec0f98c5cfd1a25873a1803c1beee9f8b2bb603844415466e9406512b69e1624412be3a48dc49ed048433599b0f9693986a5253debbc5631e0ae
 sed-checksum = 90d8fa16b2570baee061c128d6db688a3354796a6499014f12dc4c5966b34cbb8a04a47914e4ff8dc1815444ad0235565efef2a327b67c485e3324c2a1d07d78
 tar-checksum = 98d938d76a55dca1d1ba9a13f1aa2a3e8ae25ea422843e93daab98d373f4a72eebf052c88c87122ac16ed629863dc3fdb86dddf18d3ab5a2565b06f49b7d02bd
 texinfo-checksum = 6a706bd0f973b9bbe4fdbc3bfd475cc9699eb410d276cbc19a73255924313006e1b80a87803fa30f7245e3fcb610c829da31e38c91e791e19f11ca8b998914c4
@@ -77,7 +77,7 @@ zlib-checksum = 97493906504451830655b300b4144deeeb9f41bdb9b3f3a3d5635c2b16bf90d5
 apachelog4cxx-checksum = 2c4b907a47ae00c38ae9bcd5d215be5115bfb677646cac50538eb1c75824f594aa997dafc9a7828dc6bfd5f22f4c486f13e4210b9a1d8a9c98098d96384ef9c3
 apr-checksum = d0ddf8b10dd8d3a831b94e541d387414cc4d507ad48ff752d3274fb808afe6628d7951364aa3e0f71f373c78d0081411f6a0595d01c62bfb0a54bbc86002c82a
 apr-util-checksum = 6589948e3f9daf4ecd700bdbd2053fcb83005cec9d339278dda067996ba696e4a947116f066cee03214458aa15e0cb6f0df0103e7bc6f8f32327722eb7265f35
-astrometrynet-checksum = 9d07cf03f6408a19164914fa7b389aaedec8ae27ec9dcdef75b5a0db6a71000a15cdc1d9a8d9b2256c5299a890f499792407cf362ca0bed27f4f182f4a93b789
+astrometrynet-checksum = 33bf92ec1d5aad50525739f5afb3abd2abe27c8b0cce35a6923831b7b7c35930cb6f14425df47c60dc5561cd27b4af55ea6ccdabaa2d444c81a6c86c7ef9629c
 atlas-checksum = 13634a63c686800bef8affcf4e8f5f89d08f485fc557eb1b9ba51a405926014e659e439268f655984bb7f59ffe497d594cd7a607103826f1046325d89796e1b0
 autoconf-checksum = daf3d17178d8c2d0f872a50217ba4d8a1481bad7e70ee5a58c5599717a01209cbd58e6149c72f6c4829b96dcf602bcfb828d47e32a9cfe3e5710c45f4f1736e7
 automake-checksum = 728284b89ab4607b5de5db6b8bf5ad8730cbd8ac094f583b93bb92c59dee35e021e823cddd412b0507b18a12cbbbfbec0fb0447c23d0afd167769641fe0755e5
@@ -85,8 +85,8 @@ bison-checksum = 08c3e9bcf9fc01bc8b3a6c5e5f8ecdf628e07d6ce0874341e9df6d7b2925db7
 boost-checksum = cc7b78311538d6e8a6849d58da3b4d3062dc6b816f91a06b86609e6f1538d87ef9308c27af4db7a644e7c8e2b3de73c9f011a739e75262a0f36affdc313947f3
 cairo-checksum = 5de8528196b450d01da5cd4562dec0dd8c31028b77640b6c611172f7c5ad1dc9a4d30bd4e38259344c3ee42b979e29be702a3190aae5fbf47c82c79ee0c14a8e
 cdsclient-checksum = 24584eedeb84ab4666cbd2ed0b7264c92c63c9cf090595b75b01dd46f848419d6a7e5cff4db3946695f879d0ee2bfbeb527e88c2be85e769b577302d9b2ad2b7
-cfitsio-checksum = 51dc93aecadb08a402898e4c4bacf7a085a9799dda7678aa9e46d3096d51683a49bdb162f18c69b23cba47ffb78a35b11fc41a37f9b559af6da95589d3ad2e67
-cmake-checksum = 351ee5d50d65c6048508c3982842e94e74a8eba066adfd348bb4c79f41a26613c0306ea1b49e96d8272ddae3b2680d74caebcd8391a3bf72d702f30f92c48fab
+cfitsio-checksum = 18dcaec9907c0d6d09c28a1238b0ab1425268aa6c83ca163a2ea8df404cc8fcaa5b9a5b17ed585d415d56ee9a2647b0cfcd6e03da91a1a2f75cf0db530287270
+cmake-checksum = 7587ff2bc7f0d75e4a19798081d13f10545fc49fdf06e913fd1606db2056204471f3536c0e2c46924013c4d64ff1f4e0422eff5dd6b911bce65c01e8510d24be
 eigen-checksum = 39c1944e0daca50bb01e929edc98e2bfc234accb30ca019dcccfc7b02db5cc81035592be219ae93cc3ec16fe0255e7e4d1f29ca2ad3dfee7e63546c47cb2f807
 emacs-checksum = 91313dced8cd74f9e4a996eef42806aad00fb2576fc77b3694bb7b670624b6a1551ff49c2a3326dbeeba916e5732ca5975b5dc40b3b063f6e73a22839009abe9
 expat-checksum = 526f2ec03978f853ff76a911b5a168f58a7eac83b8405536afe2a6acf4611ebcb96acbc5df809fd18e4edeb7ca5059a3ce56dcbd12cb33eecf742c6361d83d19
@@ -94,69 +94,70 @@ fftw-checksum = 28bd2f620399a415181027d30d7ea193aa487c7a277c9943d0051488908fd87e
 flex-checksum = a18e0dcdd21bd51779fd70e5efc2d77fa7b2a56d4d0e929d8abb437f86d7fcfa2cd09b8268185698200866dac8bec4444c5a7cff3140c515eaa49fc77c5aea66
 freetype-checksum = b3c7289cda3f89fa6e51143f2d1f1c82fa34808d0caa9262e7be5498c8f0fdb14e88d31ec9928e3add71f03208e40adb2fa94c2a4b4c6b7bfb81daf64b1578cb
 gdb-checksum = 4afd6660d2bbc4c48ce726062fb42217bdaa5974774407358b2624036a2ace48ed853746e4d6b83b9a409cd8fefc622b0727c79da8826e28e3d1444fa3a9d148
-ghostscript-checksum = 6dd1713bf40648ba6ed234a6c68582f87fa4075a191cf9af4f4ffa1854b94439c5ee4748e27ade3e8e0b7168fee1df3e9a9f3a32f70ac1ab9dd68e3878358ff2
+ghostscript-checksum = b8ca229c118bd29f0fadb87a65975011d793d8245652eb7e2d2cc1c0e90be1d545b0bfc216703766e35aedd096a1c3ddb6ad9ed8d3c71efa0a9f9904a524e903
 ghostscript-fonts-gnu-checksum = d8de17e5d920bd3803ecdc07aca224fa5b9a26db847ddae0ecc79488dc3e867ab3155a8565f20df7855e5228bc7f36a549b082ba0b8b56c9b948d6cfb655fdc0
 ghostscript-fonts-std-checksum = 40e01f88dd113c3120686c11da1c4cf4ee77c8db315b21cc936c3ccfb42cad4949e207298ec6d78d03327ff05122fcd75ac82d5e7cdc9698d4bbf1f72b19756a
-gnuastro-checksum = 97e3789c1462b895ac8f4141dd9fe6bff0f052fb584fc73a5a7b8192adb047947500363c512fb5a947981d68cee1aba3f3082753c0c2ec43a72e7d79693dc8dd
+gnuastro-checksum = 3af26ab271d0015642e7290c96899f433c24ae93685fff3dddcef697acf590981da03a7c598b01f31ff042ec99fc4e4759a5622af73bb6ee989c3c2060be7936
 gperf-checksum = 854cdb24337f14b0d4199cc97c4a1d2ec7f953ad8125a47a932d93f79bdc067e2de231859ac0e842f14b1a8d80c5606fdc2c295a370df5e85ea15023b478805b
 gsl-checksum = f9b92ef783d922f97fa40e934314648c627002e0b5c8067e6ca9b691cfacd6363efe68216db75ae1a093053c7aa6b56fda2769bd2e10b2c3a373339d7a0fc9c5
-hdf5-checksum = f828ee9d63533effe1ad358230e5ce7b64c5016e49291d9533575f713cbfba496290fc0151fd9617898bdf36785984ddb38a9207f529d7702d4e23838fe050d8
+hdf5-checksum = 58d6d9a1c201efa0863d9c31d189b4d40b1a9b1fb1ab9cb3fdeb4463f508c043e467aa4d44484c2af111d4e2fb775223286da69568774e6edef285208290c67b
 healpix-checksum = c11949e92aae9919fd41de91cbab72beffe2519c1203ab153ba217c6b6c81f2c10ceb07b683da0d04fb53ef5c80a9b208bdbb5379f379b7da9d0611d2430cc8e
-help2man-checksum = 4e1656f323c889d2a8fd4603132fd14260de5dbf4d828122037ed561355e404458668f15adfd499c7ec600eb6fd653345cf4687377669f47d2a8ce391d5aed29
+help2man-checksum = 94346bed1c6b4f41384a216af55464ee142a47c40fa9d2dcc8bd86a4ecd64afb4ee7c1a06efbc9c6c7f4f275936dc21840ead193a8cc45840808d6d361be5e3d
 icu-checksum = ab14b52a3fdf2dcde6b5160ab7218eac381b850d3c278324379741c49d71fa6040fbacca94c6937e6c9fc15843761121deff302ca6854da5ca1cd5b26a34e839
 imagemagick-checksum = 2132614540b7422c9772fcebe7e8e358994efcfb53d8e48fa52992313b09b191847e395bad305322c377a4697014353bb8c15adc4edfd712e038504fc7f17c5e
 imfit-checksum = 15edd2349232c1c8e611b31d3a46b0700112d274515f54d0a0085bb4bfa6d3d5f8a15cd926516e043a29ce841accf3534ae58dbfb952d858dc9445199c957096
 lapack-checksum = ff670e194a1d8c998f05e6143e01a09e6b43176c511217ea3c77742afd9f2566251c50fc23aeb916442401f7118c1d1fe21f0172382a7f4f2c516c1d7d873e24
 libbsd-checksum = 5c7d98474000af1271a36ab769e54aba41578e0b0f06e47af2986d6821b6586ac430ec04cc51b7836823834dd9d0aec9f4ab3af088b94f963b89729fa2cc95d8
 libffi-checksum = 6a4d46567512c3ce69a11c8d01fa0397cf653ea6207b5a86192a52367006f0f27fc08b9ae3559ef45da69433c7c39818199b29ac06bc2c7dc0fafefe7ae7b32d
-libidn-checksum = 8606bbdacc48b7fd572104896615acf0ca88f7c11a60c9eafc2ddb8477110a1f62c5684dbd5adf45b6417d9fc04a46add26052f63e464a81b3f4192443d13447
 libgit2-checksum = 7db8792f4280c484e324aa0f862714cd2ff3ea5c93aaf6953b08f9f2d7423e742d78f6fad11b5e5823747c81188e12432f247ee99dfaf331e4ce293713904ab2
-libjpeg-checksum = e27405f4caefe485a14b5017ffb17025373ac78c6a727c5d95e6b007f5b5e1256f028beb9410f0351d3733ad7f63967de2ed523cdfa4c406db690fddebf3e04b
+libidn-checksum = 8606bbdacc48b7fd572104896615acf0ca88f7c11a60c9eafc2ddb8477110a1f62c5684dbd5adf45b6417d9fc04a46add26052f63e464a81b3f4192443d13447
+libjpeg-checksum = 420397a802d81aac7c093aa056bd306f4c617a1deaa42b75179b9497da90568d560624e5423675030fcade69fa2cbca5203060e9fe9f0ef67e5025926b2e1dbc
 libmd-checksum = a598b61dcbd7c3daf25a4affccfcdb2f6d58a0d2057b4f24e8fb92cddbeb0d62f1f5e3dd55195dd83be405d187184a331ea080b936b6c336ad4271be03b0beb0
 libnsl-checksum = a3c8f674357674b7ed4b26c05adde607f39be8d6dc9ff715448e1fcc5fc23d11fbb4ce85a6e493b79bdb0bb450dc3ffb1fb480715779f738d7bc016fae91621d
 libpaper-checksum = e1f37dfbbcc467c2269e228fa71893fd6c4738e1fd6cf24ce6e2ded568cfeeed80da097e51e833aa48e4ab9e1be0a5c75f9f4cf8bf2f050214c85013e9c24043
 libpng-checksum = 8bf8aaccf4b9efe15a18f0c7a0a6a942eba7bcdbaf61313f50af7e04a237ccc12f380b53ed88e5efa2d20b13f1a0f9f365b6bd7824d32350b3b3d9c6fa63eef6
-libtiff-checksum = 628e9e6b3ff5cdf661ac4c9cbee7fc10d5555554d39e447d9a0c4e99b9a81e4ae51e990f7e3a83b607145948a57a3d1d46fae13758d844ebb3e55bb307e28ebf
+libtiff-checksum = 4e0da3df4b853f2017d99f23c5ed83d9f0d20743ce4caaf2ab915fa2d392858a7a74f91b1fd8a00055d1e82e26a5eb165aec6411709ea66478dce16062ccb93e
 libtirpc-checksum = bcb6b5c062c1301aa1246ec93ae0a5c1d221b8421126d020863517cb814b43ed038fb6c0c2faf4e68ff133b69abefe4f4d42bfc870671da6c27ca941a30b155a
 metastore-checksum = ac1230686535a652e95024abaf6c5585bdab36f4e092bee5fa4deff2a913cd60f3a6bd8020c6887ccab97f0da3a284a0d4619fad5464a269e7b2040d6f7e6aaf
 missfits-checksum = 32727f5eb30573a1cedacb8900e2536867e4815059eee32e64e3db65be9291b8a91b9f45b2c9f3cf6fc2a8cc448012ea3d502bdd9dee516008e17d5086aee795
 netpbm-checksum = aef81d2e46850fae1fb34a38fa9f634be3c47c7c4e80f300c61aadd5532bcbccdec636e6c701e54caca67ac2d6ce3a7b6a9f090deb00cd4db718439986f89d8e
-openblas-checksum = 363588495451f872d4332a1c5e5ff4422202935641f490515e6f8144d3e1838ef737f39e77aaca396d23f9011b981961aa503e5d5935260231e31bb2280f890d
+openblas-checksum = 979cf2ecd4777fd0a65091210187b717e20ebe65917dd568dfb2590c686cf1a665dffcb3732c7e199c7b951a31e625f0428119d59106635af96552f69964908f
 openmpi-checksum = 88c73fd708dd5fe3a893d5517425a8a4c3e252fae4715df9a9b0f2311abe94cf5f71be92f153820fbaeb32c7d0ac0175d5165bdadcadc731427309102182c1bd
 openssh-checksum = e280fa2d56f550efd37c5d2477670326261aa8b94d991f9eb17aad90e0c6c9c939efa90fe87d33260d0f709485cb05c379f0fd1bd44fc0d5190298b6398c9982
 patch-checksum = 75d4e1544484da12185418cd4a1571994398140a91ac606fa08dd067004187dad77d1413f0eb3319b3fe4df076714615c98b29df06af052bb65960fa8b0c86bf
 pcre-checksum = abac4c4f9df9e61d7d7761a9c50843882611752e1df0842a54318f358c28f5953025eba2d78997d21ee690756b56cc9f1c04a5ed591dd60654cc78ba16d9ecfb
 pixman-checksum = 333732b99994f7ea636d647e0b6123075351b27601b5b6370c9bc821a1ab3921386ddb92b51e015f3fc35104ba09be1e0d7bef47f0b4f73036b01d1d70396dd9
-python-checksum = 30cc55a4ca7d65c55a967d9c43e2ebeeed2905f2fab01540140537e0384f943b6ab6699b1c2b91cb2b3834fe7d3d1976aec58ba4c5b9f209bc0ea9a0ff248332
+plplot-checksum = 2c5a36d84ebd948402c924d304427b5702bc75bdd22753c9b3b910b382dfdcc26910382aae452f02d86b25c1c813bbe1f40c9305de1d2809d575975f610fdf10
+python-checksum = b3d6b4187b31167b382e195037d7ca01d5e9c112fceb0f12a30c101dbcc91079601c01aa449f9d33d2fc53c795c33305e80c891e986a0e24cbecc14beaf90199
 r-cran-checksum = 54cc07956a70c09b5a533188eb063d2a9dc67a8aa5648ec7f9c107f626220c9f6e17ab7175e65dd54a8d608a1ca4106c8ad2856709eb995ab66439b5f033e725
 rpcsvc-proto-checksum = c3011d7d7ef97a4a751f6921df1a23e1dd8ac50fb0690c759d37010ed7be27968a2130e3b8872cb48d5914216f9d539096a424f1ec38a75f7ed899748151c6f4
-scamp-checksum = 35034a367d2cd09dc51e727e0f23ef6234edc0d978fd71cda1e80391d86af160138cb57281f7f7f9047e35b1246a0de6b235414086a62524413ed423f498583f
+scamp-checksum = c7a192f357c6808acd16d1c5d2657c5c8c2f61e4fecb8a4b18d39b07f4c444f85d5029c21571d41ec3ba9c8d075de8bd660b0e029bf5dd63e3819e963430a938
 scons-checksum = 0477038b014674049f12899b64584d44a85283d521b2422561e42020a5ae296a5af005684087c3ff410ed3fcbdcc5ff61998bc429eb29513f2a864138ffc4945
 sextractor-checksum = 4035710f9b8a20a0bb1a3913dab2dadd8444c179bf6dee425e0e8bb66a772944ea189bfce89fd791d316a790fc4b2cb15a62633b19d1d5331b1803dec2e70af7
-swarp-checksum = 80f4ade59738df3d4c9b47bda04148b53c6ba995d523fa8d1e02fb5d952b6078a53cc7d273849a033505de127a4f318b95adf2bf5a2dc38e8cc9bdaf5658487a
+swarp-checksum = 810af6ea0a2dfc7b78b0f6aaa486b80c29f517b90c29f5037d05f31f761e96a55c8b5dcc259e1b435b25f45f01dac45ddba61da84000a69676cce119880bb05d
 swig-checksum = ecb1d940f584c23df036a8f77288916003f861851dfdf836ddc5bc45b95312f9259150084191c1d9f086c006e64e12a4db22f7ea382fbb71667b811b8f99995d
 tides-checksum = c3360ff0d023b43749ba09a33302ca059f017a157b3ce7cdcf4f1a1578e90d3e7fa420077043adbee6b1ebf94bd698c8d6b279012f36d2a05b4de5351e30e108
-util-linux-checksum = 2e07b4765482182112c424cbfe5af0dc9c9a50918e335bf99846f3017b291f5df23e95c77942f2265e9b0d471201a0d53d3c79d916df1c61cf044a80e37f85ee
-vim-checksum = 06ba43386fcf308520d88d7a68e9bc1fabd824b05078b8f9112500a2ad4e50a91f1a1c2925889b7c06dbce34307f12abf508e2172b05fd283f965cc06552eb6d
-wcslib-checksum = 008bb069bcc21f7944b37ca44e85aa5d343d44aeb24ad3920c2db716a984e3fb63cdad8fe05ae63b8850c5ce4ce5f81c524dfd14958ae38fcaef32f893814b45
+util-linux-checksum = 5f2534266a71cf61373d5b79f5a130191a06e5a3cc025982747be0d336b7ff60bded56cb1e0b42705f01dbd3ff8634928760554c53fef10045e68775c945854f
+vim-checksum = 85d083fcf3638f2c3a049b88da46d569d6a250ae132f3821d440c07c4792befffc09e4235241ca96d7b0307a1bb96cd2222ac8a63fb41c6add8c2bdc6c17aabb
+wcslib-checksum = f2ee5b0b6aa8e6ef2923a85d0213e7d66c54b6cdee5c6843abc97436b699215479815db2766ae76af1f1bd6eef4f46cd8510dd87bae8272a4a7c770c32ab7535
 xlsxio-checksum = 22870fda7bd4eefd5fea2a9ad7530c9049135129d9b69805091777e6b54b2fc6c3f0e69c6954f36bce54eebbfeccaf637cce9e271a593221a4296d6632470a6c
 yaml-checksum = dadd7d8e0d88b5ebab005e5d521d56d541580198aa497370966b98c904586e642a1cd4f3881094eb57624f218d50db77417bbfd0ffdce50340f011e35e8c4c02
 
 # Xorg related packages
-util-macros-checksum = b29c388c60b8318a478656f0552210b2194ee302c082f694e5426ac5c3f4b97fc3e377cd6a7b2b97c3da3442cfb4a5e42dbae18e151ae39f5f84554016a01155
-xorgproto-checksum = b9471ce92f2a5fee9d32710191d7df63799027214ceace60fb2ae8616c888ad142d2a131dea5acc768e86bc71719873c72c20a2863fa821790b96faef44f603f
+fontconfig-checksum = 4786b8419bdead24fe16cdb152b898d2676a59c534fd301f02e5343fd4fe54780fea06521e7c0bf45b794dbb08b0f17359eb5c6f1fe4e31d71dfd952c8fa3da2
+libice-checksum = 9e3488abaff115ac919e5df85479044579802b38a10597425e13466c22c149ef56a8adba77e2adbbcccb8d2e72e23976313f4af3dcee66128b768c971c513932
+libpthread-stubs-checksum = a99695c007e17d81879d5c113652c5e1edab2d63aac9b2984c4f334d85e2cebc1d0b4e8134d6196ed8eea4d4da41972fca27bb8a0c76c2946460f785233a2c03
+libsm-checksum = b9eec391f0438e85e32cf771afbb35bf215119ec31d9e31be40c1b653f2c3e894c2d19add0d6ff69e944d1230f681275e8abad86a8912ec37c1c41e0f1ce4d00
+libx11-checksum = c5ee35af06a90bfa0e9c5f42feea9887c5beb88960a7658f8465524a360e400a5640e5dcda741549d7ecf470e7142d3728a32659e12f95a316203655a408db42
 libxau-checksum = bdca8935aa1a52bcd2748004d26c7405725c18021a4d9a67604c98c1ec3957cc85b5d987d2fcd9fa4ae5e59b6bbd6ab75712beee2d448bd733a7e3ffeb18e62f
+libxcb-checksum = 85effa5ac6c158df2affbe1a9085ebd2c52ddceaa8d972035afaea2a1f1d3031357bac2586237438cfc20a51468e620b0ff8775d057446ce2ef0768d947e9f25
 libxdmcp-checksum = cb1d4650f97d66e73acd2465ec7d757b9b797cce2f85e301860a44997a461837eea845ec9bd5b639ec5ca34c804f8bdd870697a5ce3f4e270b687c9ef74f25ec
-xcb-proto-checksum = 385ea15eac6326b73849f1dae790619760f473f4c5471a3ccf990b01350931395e988cd83f632c94fe987eec74198f59835b8140686774710462e0019f90c168
-libxcb-checksum = c69c7e5d6c172aa0bd65d6f3ad25d9a8388194cf2281ee9c9e02baf73c351752b7c287fd04f8ee3429d5b55358806c81565046796263212379593db4e32c4287
-fontconfig-checksum = 12dfddb3b37d71555764fe97dcb439496f3fc0e6d34e4536a92eda1069cc78ceb1dda5b2c0b247f779a093a6c75c56afcac6f0cd099d897c2ce30740a9fbb183
-xtrans-checksum = 1c2fdd7cb906f012f7db5d42466734f89608bf3376b6bf4b115c2efbf71c4247587cc218ccfcfaa6d50f0cf336865d10fc604515b25bc6e95917db8acb7e3000
-libx11-checksum = 740cc5364d49cee8fd86f3dc0f43d7b358c94989717ea8991addea9b2307df6e5b2ae1f8f7aa3571f7294b8760c7aca7be9fdf5b477dec55da14e915dccafd7c
 libxext-checksum = 58f4e87f200bfde2b9a2cd85c1c39d5462b702e12274ffa5fae5bd3a08b3dfab1290b399c31224c86627d927106e4dbfcdec6152c11b169834442008228796d4
-libice-checksum = 9e3488abaff115ac919e5df85479044579802b38a10597425e13466c22c149ef56a8adba77e2adbbcccb8d2e72e23976313f4af3dcee66128b768c971c513932
-libsm-checksum = b9eec391f0438e85e32cf771afbb35bf215119ec31d9e31be40c1b653f2c3e894c2d19add0d6ff69e944d1230f681275e8abad86a8912ec37c1c41e0f1ce4d00
 libxt-checksum = 9ec0f95ae073360ea7a80ffca2dcd998c991363b79696550c4f88edf2c9cbf740caca23929660b77fffca4ca292465a101398e9e891cd00db85f8eceaa78cde0
-libpthread-stubs-checksum = a99695c007e17d81879d5c113652c5e1edab2d63aac9b2984c4f334d85e2cebc1d0b4e8134d6196ed8eea4d4da41972fca27bb8a0c76c2946460f785233a2c03
+util-macros-checksum = b29c388c60b8318a478656f0552210b2194ee302c082f694e5426ac5c3f4b97fc3e377cd6a7b2b97c3da3442cfb4a5e42dbae18e151ae39f5f84554016a01155
+xcb-proto-checksum = b1e2c12c9d66e729815e782af47cfd50ede4c771fe0d0607a423a3bcddfb5f2fdf5c8b58b17cfccf508104cf5ad6cc05be8bad5f96807538322050ecd65fa320
+xorgproto-checksum = 32852ca4d682207dd1399274714f26da6a995c3f4a20c3ef197e8dfd637f6782d4ce02cb8721ca0179e4618a585beacc53e74537869434dc3096d4ad47e10c26
+xtrans-checksum = 1c2fdd7cb906f012f7db5d42466734f89608bf3376b6bf4b115c2efbf71c4247587cc218ccfcfaa6d50f0cf336865d10fc604515b25bc6e95917db8acb7e3000
 
 # Python packages
 # ---------------
@@ -170,7 +171,7 @@ libpthread-stubs-checksum = a99695c007e17d81879d5c113652c5e1edab2d63aac9b2984c4f
 # hash here.
 asn1crypto-checksum = 44d442a6ddfa971e31e24712fe084368356deb5e1c4c3b3e813e0910931860215bc1c4f9eb2c4bd4fdef607c324086c096e9357068646efd28c97f2d4f85c62f
 asteval-checksum = 4d64900b2f7dfdd098d6c8c102f9d9fd46f9ec265a54330e7d94479ba41f0ee0698855658e18b8b32b9c255159eb9a085af5f0306eb6508663d3fea7d2e00b4a
-astropy-checksum = 52b7feae68308445014665e3fc80201ca82955916fbe4d065dbb1a439885befb4f669932cec6fd7d359094138fab0ca188162efab764c4591d53896cdb335426
+astropy-checksum = 4dcc515dd656b2c8d040456f8ca66fae9bf856e2e8273675b28d924fc66a6cc687ac258a696f7d6fa5959cde2c2761e3e1c14c1e8db4e6adc690eb59ea0feb7c
 astroquery-checksum = 43846791d8469a26cf6bb8819db58b830cfe50a34bc0091c2e843dd7dc78b1317530855d432a3a567a9f6a6f4d2682382a32edc91ea01716246b99b3625ec521
 beautifulsoup4-checksum = bf8fd3e54da63a506f294f0e5f1201fd46bf2edcc2db23e99eda995313b8a8d24db3cd2d1903853c539a9320bfb9eb4b29e311772bfddc0d125f0b4aec71e384
 beniget-checksum = 32a19d77323a0a21544ce7fbbb71cc5f4c66949dba280d81deb36f38364544d9fdfb3d24fc48a1ff6d251fb22c24357e81dd7fa4a7e6c11d8b931723e150a182
@@ -188,7 +189,7 @@ esutil-checksum = 7f1f22b0a05855819e3bd9bc2eee14942c2f536fb99f4af03575eb41d3d3fd
 extension-helpers-checksum = ea62d537d0f76af9f975ad577d3a679e027fe0dd21f8a125ccb34bff1e4cfb69ecc15c8bceb406744033e91827fc8b78477e30e8f3cc45396bb6ed8102159b08
 flake8-checksum = a25076bb7f978ca23af0f2016b30bf5fe4680371b4c0939361a6f8c496f3c846cf98ecadee35fc2dedd588116c8cd982529972dd2411ab139621912b69132a1e
 future-checksum = c70565a660cf87c5e7e994bae0d4eb0b2b8b607ecb5ce65521c027bf0a39ce5699f0578413bd3c7edd5d01aeb1617de48dcea098a9e9021d8487a73007573030
-galsim-checksum = d7e354778de87cf5c8964a7f252025eeeabc04ef2fb673c35adc536b449442aca261e2bd96befaaa872065376ac79cbe23d1ee7d034bcab5916f74b98112b8b8
+galsim-checksum = 65393c4bcf52a3e723604a956aac5f58f490e41c7d5ddbd5d61660658738e2496aa30f632d4d83b765aaf1e46ac691fcd02fc827380e07c8f921c160a9f6a6fd
 gast-checksum = 8311f48788daf060bee54ad8986eae054c2a426adcf97f1503cde37c4da2827cd0f664188e51f5c2f932a0a4ded78166a8466465595a640106060c8b6c7072a5
 h5py-checksum = c49b04f7dcddf03f36d4f063d79ecbe544e0b1daee432d4a76cfa83dac3a1f2cb144f40a74fb85ea17cb5b778f57f709969ea5d1a2afc5bdd5aecbc9d732898d
 healpy-checksum = installed-with-healpix
@@ -224,8 +225,8 @@ requests-checksum = 385e1d80993a21c09e7c4682500ca8c24155962ba41ecd8e73612722b2ff
 scipy-checksum = ed7956f5686b13689d9a8246a8c3afa64a33f993b38fe0e9ed9e880d49298fea6014f10bc3e1a280f1474155cd691ee0409d133254c5f8cd133805d41b2f1ed4
 secretstorage-checksum = 295e0f75c772edf153480730dc20051f06e60e040a18f169620cb4aaa37b8c1a254a496464d3794a38cf49fa884a7b561fe364816f0d12a5b2622c77259f03cf
 setuptools-checksum = 92040b907eb5d15ae6a95f73c2f2229e7d4c1941c82890ce3920fcb5549240223433db6e1388b1131ba574540a55a0487ae9b802c9e43d0c1cfde699167ef3e6
-setuptools_scm-checksum = 196d4785a1802875d89b9e54ae788e791a9c5cb685109784059955b691242984e42b96d77075116790935f56be82259bc2588d95d65ecbb101261d76daddb83c
 setuptools-rust-checksum = cdebf61a2d55846104a3f2ff5eb0c1e268285d2e1f074dc0080b99faf74e3bfa55af9dd5ecd12aba97b37888b8bf5d7388d7b42f2b0b9e906c9860309ea5aceb
+setuptools_scm-checksum = 196d4785a1802875d89b9e54ae788e791a9c5cb685109784059955b691242984e42b96d77075116790935f56be82259bc2588d95d65ecbb101261d76daddb83c
 sip_tpv-checksum = 5e03279cb3650dd506332dfcb31aa4a20f23f55b8a29fd18da5c6d422d1b7dc49e12362ceae2ff7417c874401b5e87a73ca1ac0f3c8747c8984e4269cad56c3f
 six-checksum = 903334a9dcde08d654e5bf8f2bc06aa4d72449bd2b667505b9c191c38eb5b8259233fc791215584393cc70aea92ea29035460880a6a151f5defce5db084da1af
 soupsieve-checksum = abdcbb6a13563e7afadd3056141587fdc3d7d644e346f789bca0a16242d860219e462491b0c624b287300af960fb8e3f85c79f5137580939a9fc8c3d6961478c
@@ -246,6 +247,9 @@ wheel-checksum = 0a900806b97c368a6fdb763353c14a54e1fb629443af11432cbbaba5f2d7fa7
 # 'reproduce/software/conf/versions.conf'. If you update the version and are
 # confident that the new version is safe to use, then you can update the
 # hash here.
+r-cran-MASS-checksum = 0d22ff69cff1414bf52d11aefd75b442c9c8fecb343fe3733c7b28a6b881f3c87ac8b6e4b0d76709c36e612523ef386d207d403c2292881c083e03d21b3709ec
+r-cran-R6-checksum = 5986510ff19c1e0129bb0b88d72020d30255e26d6da9a40c123b7b0c42c3e121188c8de34b79ad5eb0e0390eb4d59f2b7f0224b58679459bec0c4d677dec6ea9
+r-cran-RColorBrewer-checksum = 62aae85a0cf349a58ff51922886f71e2a9dc7b9548b061390f3b370f240bcec72340b3ebc03077a0374ce18ccf16121247e0500eca875ef2ab2f755c809e8f28
 r-cran-cli-checksum = 29782b4cb00a94536c871276835a5f762f3deca8355c35b9366434cd2873604ea20f2746ef624eb4e6ec1514cb9079e8c101e50ace85fb1336f3befcf77be244
 r-cran-colorspace-checksum = b6c24e1dd104d444e09049df61fcaac680aafc1f530bcff07fc8ce5f2bcfc9a3521aac032a506b61dd10de885a914ed82c4095ee95113e407ffd0cd43662f098
 r-cran-cowplot-checksum = 39e3b29078ffa67e03911c21b4cc09a8dcfe0bf38fb180691e82f2ff87c993e78f89173a750dcf08424fa1e0ab39ae5d07fc59af792ac0333ef02cd9ea8afc03
@@ -262,13 +266,10 @@ r-cran-isoband-checksum = 253d0b768492b64d5c32ab20f3b896cfe206305b8a53b31055813b
 r-cran-labeling-checksum = 0ba0cb33863f79868ec6f2289f29ddc742cc620b7ed85364099448d39d71a51cce45028097100aeeaf8a8a7e4ad0982b459ef20a15faed9c5c7db79e9f9b01fe
 r-cran-lifecycle-checksum = 1ac7aafb41925d19abfd78f454d1acd5102a72ee7017840f14cf54d035cf3999d5b6dc2979b00214358e3c26dfac3407c8b525b434e8882c123a92a132bb07df
 r-cran-magrittr-checksum = b0bca6000602b90c996efc3681799a8a965a5bb90eb5e3436b7a26be15e5a219ef6300f4086f0b6efda734272775688a8ca77a4094eda429926a9179125b87c7
-r-cran-MASS-checksum = 0d22ff69cff1414bf52d11aefd75b442c9c8fecb343fe3733c7b28a6b881f3c87ac8b6e4b0d76709c36e612523ef386d207d403c2292881c083e03d21b3709ec
 r-cran-mgcv-checksum = 83df262152d9ee5081b3d16711b5cae3860f7dd879f97db014b987edd6b110b11219bac0e07f8ca04169181291aea76399d465b9bf0e96a1b6aaf83692fdf5bc
 r-cran-munsell-checksum = 59536096c637d84b80f097bf400bcbb9fcb7ddf6267ce6b026e3c7b3cbcf548caef118439a1928dd8833359a18b14e49f38fe90ea7919c28c215b3b297c036a3
 r-cran-pillar-checksum = dd2bc53539ec6838cb8d5bb5ddf30cff9c43c5de0f8d148374d5a394385429a06243db48e7cf6bdb463bad7a130fb47b172ceaac8d04ca3205b4c4210ab672ff
 r-cran-pkgconfig-checksum = 0b636d9b1233a00974ac93eb2a1e0ad6b552fa043bfe9743ec74ef884c1d01a73c372586516abca8772a836c50dcd9eed4d10c50f6883fc68ba2494e79872aaf
-r-cran-R6-checksum = 5986510ff19c1e0129bb0b88d72020d30255e26d6da9a40c123b7b0c42c3e121188c8de34b79ad5eb0e0390eb4d59f2b7f0224b58679459bec0c4d677dec6ea9
-r-cran-RColorBrewer-checksum = 62aae85a0cf349a58ff51922886f71e2a9dc7b9548b061390f3b370f240bcec72340b3ebc03077a0374ce18ccf16121247e0500eca875ef2ab2f755c809e8f28
 r-cran-rlang-checksum = 8dc647e59dc767471345f9cfda7b77316215b0bf5a96e28f63e216d80f239ba9ed260b90926d175080e256d645f9a1b621d7602bfe27c32d0151758753b6cac8
 r-cran-scales-checksum = a1c693f993010613a33b9a165d5f853ad5f4fbbd790deae2bd5b19adc6ea0adbf27962e0f56807297ec56a71a6a5f57e3aa0ef78c266e74dc600da34c24d16e8
 r-cran-tibble-checksum = 4a4953b9083064ba10e240e304617f0b2c65039eb188f56761cfac228e99186054b543aef045607b63e5ebf9da2d20255f0ae724fd974c497507706d21a92864
diff --git a/reproduce/software/config/urls.conf b/reproduce/software/config/urls.conf
index 7177411..6c68830 100644
--- a/reproduce/software/config/urls.conf
+++ b/reproduce/software/config/urls.conf
@@ -41,7 +41,7 @@
 #libtool-url = http://ftp.gnu.org/gnu/libtool
 #libunistring-url = http://ftp.gnu.org/gnu/libunistring
 #libxml2-url = ftp://xmlsoft.org/libxml2
-#lzip-url = http://akhlaghi.org/src
+#lzip-url = https://download.savannah.gnu.org/releases/lzip/
 #m4-url = http://akhlaghi.org/maneage-software
 #make-url = http://akhlaghi.org/src
 #mpc-url = http://ftp.gnu.org/gnu/mpc
@@ -149,15 +149,17 @@
 # Xorg packages
 # -------------
 #fontconfig-url = https://www.freedesktop.org/software/fontconfig/release
+#libice-url = https://www.x.org/archive/individual/lib/
 #libpthread-stubs-url = https://xcb.freedesktop.org/dist
+#libsm-url = https://www.x.org/archive/individual/lib/
 #libx11-url = https://www.x.org/pub/individual/lib
 #libxau-url = https://www.x.org/pub/individual/lib
+#libxcb-url = https://xcb.freedesktop.org/dist/
 #libxdmcp-url = https://www.x.org/pub/individual/lib
 #libxext-url = https://www.x.org/pub/individual/lib
-#libice-url = https://www.x.org/archive/individual/lib/
+#libxext-url = https://www.x.org/archive/individual/lib/
 #util-macros-url = https://www.x.org/pub/individual/util
 #xcb-proto-url = https://xorg.freedesktop.org/archive/individual/proto
-#libxcb-url = https://xcb.freedesktop.org/dist/
 #xorgproto-url = https://xorg.freedesktop.org/archive/individual/proto
 #xtrans-url = https://www.x.org/pub/individual/lib
 
diff --git a/reproduce/software/config/versions.conf b/reproduce/software/config/versions.conf
index 04de56f..725c721 100644
--- a/reproduce/software/config/versions.conf
+++ b/reproduce/software/config/versions.conf
@@ -17,26 +17,28 @@
 # --------------------------------------------------------------
 #
 # CLASS:BASIC (important identifier for 'awk'; don't modify this line)
-bash-version = 5.1.8
-binutils-version = 2.37
+bash-version = 5.2-rc2
+binutils-version = 2.39
+bison-version = 3.8.2
 coreutils-version = 9.1
-curl-version = 7.79.1
-dash-version = 0.5.11.5
+curl-version = 7.84.0
+dash-version = 0.5.11-057cd65
 diffutils-version = 3.8
-file-version = 5.41
-findutils-version = 4.8.0
+file-version = 5.42
+findutils-version = 4.9.0
 flock-version = 0.4.0
-gawk-version = 5.1.0
-gcc-version = 11.2.0
+gawk-version = 5.1.1
+gcc-version = 12.1.0
 gettext-version = 0.21
-git-version = 2.36.0
+git-version = 2.37.1
 gmp-version = 6.2.1
 grep-version = 3.7
-gzip-version = 1.11
-isl-version = 0.18
+gzip-version = 1.12
+help2man-version = 1.49.2
+isl-version = 0.24
 less-version = 590
-libiconv-version = 1.16
-libtool-version = 2.4.6
+libiconv-version = 1.17
+libtool-version = 2.4.7
 libunistring-version = 1.0
 libxml2-version = 2.9.12
 lzip-version = 1.23
@@ -44,14 +46,13 @@ m4-version = 1.4.19
 make-version = 4.3
 mpc-version = 1.2.1
 mpfr-version = 4.1.0
-nano-version = 6.0
+nano-version = 6.4
 ncurses-version = 6.3
-openssl-version = 3.0.0
-patchelf-version = 0.13
-perl-version = 5.34.0
+openssl-version = 3.0.5
+perl-version = 5.36.0
 pkgconfig-version = 0.29.2
 podlators-version = 4.14
-readline-version = 8.1.1
+readline-version = 8.2-rc2
 sed-version = 4.8
 tar-version = 1.34
 texinfo-version = 6.8
@@ -79,6 +80,15 @@ bzip2-version = 1.0.8
 # the date that is also equal to the version.
 certpem-version = 2021-10-15
 
+# PatchELF
+# --------
+#
+# PatchELF 0.15 requires a C++ compiler with the 2017 standard. There are
+# still systems that don't have such compilers and there hasn't been any
+# Maneage-related bug in PatchELF that would need newer versions. So we'll
+# stick to this version until the stdc++17 compilers are more commonly
+# supported.
+patchelf-version = 0.13
 
 
 
@@ -93,18 +103,17 @@ certpem-version = 2021-10-15
 #
 # CLASS:HIGHLEVEL (important identifier for 'awk'; don't modify this line)
 apachelog4cxx-version = 0.12.1
-apr-version = 1.7.0
 apr-util-version = 1.6.1
-astrometrynet-version = 0.89
+apr-version = 1.7.0
+astrometrynet-version = 0.91
 atlas-version = 3.10.3
 autoconf-version = 2.71
 automake-version = 1.16.5
-bison-version = 3.8.2
 boost-version = 1.77.0
 cairo-version = 1.16.0
 cdsclient-version = 3.84
-cfitsio-version = 4.0.0
-cmake-version = 3.21.4
+cfitsio-version = 4.1.0
+cmake-version = 3.24.0
 eigen-version = 3.4.0
 emacs-version = 28.1
 expat-version = 2.4.1
@@ -112,70 +121,70 @@ fftw-version = 3.3.10
 flex-version = 2.6.4-410-74a89fd
 freetype-version = 2.11.0
 gdb-version = 11.1
-ghostscript-version = 9.55.0
 ghostscript-fonts-gnu-version = 6.0
 ghostscript-fonts-std-version = 8.11
-gnuastro-version = 0.16.1-e0f1
+ghostscript-version = 9.56.1
+gnuastro-version = 0.18
 gperf-version = 3.1
 gsl-version = 2.7
-help2man-version = 1.48.5
 icu-version = 70.1
 imagemagick-version = 7.1.0-13
 imfit-version = 1.6.1
 libbsd-version = 0.11.3
 libffi-version = 3.4.2
 libidn-version = 1.38
-libjpeg-version = 9d
+libjpeg-version = 9e
 libmd-version = 1.0.4
 libnsl-version = 1.2.0-4a062cf
 libpaper-version = 1.1.28
 libpng-version = 1.6.37
-libtiff-version = 4.3.0
+libtiff-version = 4.4.0
 libtirpc-version = 1.2.6
 metastore-version = 1.1.2-23-fa9170b
 missfits-version = 2.8.0
-openblas-version = 0.3.18
+openblas-version = 0.3.21
 openmpi-version = 4.1.1
 openssh-version = 8.0p1
 patch-version = 2.7.6
 pcre-version = 8.44
 pixman-version = 0.40.0
-python-version = 3.10.0
+plplot-version = 5.15.0
+python-version = 3.10.6
 r-cran-version = 4.1.2
 rpcsvc-proto-version = 1.4
-scamp-version = 2.6.7
+scamp-version = 2.10.0
 scons-version = 3.0.5
 sextractor-version = 2.25.0
-swarp-version = 2.38.0
+swarp-version = 2.41.5
 swig-version = 4.0.2
 tides-version = 2.0
-util-linux-version = 2.37.2
+util-linux-version = 2.38.1
 valgrind-version = 3.18.1
-vim-version = 8.2
+vim-version = 9.0
 xlsxio-version = 0.2.21
 yaml-version = 0.2.5
 
 # Xorg packages
-util-macros-version = 1.19.3
-xorgproto-version = 2021.5
+fontconfig-version = 2.14.0
+libice-version = 1.0.10
+libpthread-stubs-version = 0.4
+libsm-version = 1.2.3
+libx11-version = 1.8
 libxau-version = 1.0.9
+libxcb-version = 1.15
 libxdmcp-version = 1.1.3
-xcb-proto-version = 1.14.1
-libxcb-version = 1.14
-fontconfig-version = 2.13.94
-xtrans-version = 1.4.0
-libx11-version = 1.7.2
 libxext-version = 1.3.4
-libice-version = 1.0.10
-libsm-version = 1.2.3
 libxt-version = 1.2.1
-libpthread-stubs-version = 0.4
+util-macros-version = 1.19.3
+xcb-proto-version = 1.15
+xorgproto-version = 2022.1
+xtrans-version = 1.4.0
 
 # Version-dependent build
 # -----------------------
 lapack-version = 3.8.0
 libgit2-version = 1.3.0
-wcslib-version = 7.7
+wcslib-version = 7.11
 
 # Netpbm's questions in the configure steps maybe change with different or
 # new versions.
@@ -188,7 +197,7 @@ minizip-version = $(zlib-version)
 
 # Be careful with updateing hdf5 because h5py 2.10.0 doesn't work with
 # version 1.12.0.
-hdf5-version = 1.10.5
+hdf5-version = 1.13.1
 
 
 
@@ -206,7 +215,7 @@ hdf5-version = 1.10.5
 # CLASS:PYTHON-START (important identifier for 'awk'; don't modify this line)
 asn1crypto-version = 0.24.0
 asteval-version = 0.9.16
-astropy-version = 5.0
+astropy-version = 5.1
 beautifulsoup4-version = 4.10.0
 beniget-version = 0.4.1
 certifi-version = 2018.11.29
@@ -222,7 +231,7 @@ esutil-version = 0.6.9
 extension-helpers-version = 0.1
 flake8-version = 3.7.8
 future-version = 0.18.1
-galsim-version = 2.3.3
+galsim-version = 2.3.5
 gast-version = 0.5.3
 h5py-version = 2.10.0
 html5lib-version = 1.0.1
@@ -233,7 +242,6 @@ kiwisolver-version = 1.0.1
 lmfit-version = 0.9.14
 lsstdesccoord-version = 1.2.0
 markupsafe-version = 2.0.1
-matplotlib-version = 3.3.0
 mpi4py-version = 3.1.3
 mpmath-version = 1.1.0
 numpy-version = 1.21.3
@@ -242,18 +250,17 @@ pexpect-version = 4.7.0
 pillow-version = 8.4.0
 pip-version = 19.0.2
 ply-version = 3.11
+pybind11-version = 2.5.0
 pycodestyle-version = 2.5.0
 pycparser-version = 2.19
 pyerfa-version = 2.0.0.1
 pyflakes-version = 2.1.1
-pybind11-version = 2.5.0
 pyparsing-version = 3.0.4
 pypkgconfig-version = 1.5.1
 python-dateutil-version = 2.8.0
 pythran-version = 0.11.0
 pyyaml-version = 5.1
 requests-version = 2.21.0
-scipy-version = 1.7.3
 setuptools-version = 58.3.0
 setuptools_scm-version = 3.3.3
 sip_tpv-version = 1.1
@@ -264,6 +271,12 @@ uncertainties-version = 3.1.6
 urllib3-version = 1.24.1
 webencodings-version = 0.5.1
 wheel-version = 0.37.0
+
+# More recent versions of Matplotlib and Scipy have issues with finding
+# dependencies in our Python build system.
+scipy-version = 1.7.3
+matplotlib-version = 3.3.0
+
 # CLASS:PYTHON-END (important identifier for 'awk'; don't modify this line)
 
 # Special Python modules:
@@ -309,11 +322,14 @@ wheel-version = 0.37.0
 # called 'R-CRAN' (or 'r-cran') in Maneage, because searching on a single
 # letter string 'R' is extremely inefficient.
 #
-# IMPORTANT: If you intend to change the version of any of the R-CRAN
-# modules/libraries below, please fix the hash strings of the respective
-# packages in 'reproduce/software/conf/checksums.conf'.
+# IMPORTANT: Similar to all software, if you intend to change the version
+# of any of the R-CRAN modules/libraries below, please fix the hash strings
+# of the respective packages in 'reproduce/software/conf/checksums.conf'.
 #
 # CLASS:R-CRAN-START (important identifier for 'awk'; don't modify this line)
+r-cran-MASS-version = 7.3-54
+r-cran-R6-version = 2.5.0
+r-cran-RColorBrewer-version = 1.1-2
 r-cran-cli-version = 2.5.0
 r-cran-colorspace-version = 2.0-1
 r-cran-cowplot-version = 1.1.1
@@ -330,13 +346,10 @@ r-cran-isoband-version = 0.2.4
 r-cran-labeling-version = 0.4.2
 r-cran-lifecycle-version = 1.0.0
 r-cran-magrittr-version = 2.0.1
-r-cran-MASS-version = 7.3-54
 r-cran-mgcv-version = 1.8-36
 r-cran-munsell-version = 0.5.0
 r-cran-pillar-version = 1.6.1
 r-cran-pkgconfig-version = 2.0.3
-r-cran-R6-version = 2.5.0
-r-cran-RColorBrewer-version = 1.1-2
 r-cran-rlang-version = 0.4.11
 r-cran-scales-version = 1.1.1
 r-cran-tibble-version = 3.1.2