IMPORTANT: New software versions (17 basic, 16 high-level and 7 Python)

It was a long time that the Maneage software versions hadn't been updated.

With this commit, the versions of all basic software were checked and 17 of
that had newer versions were updated. Also, 16 high-level programs and
libraries were updated as well as 7 Python modules. The full list is
available below.

Basic Software (affecting all projects)
---------------------------------------
bash            5.0.11 -> 5.0.18
binutils        2.32 -> 2.35
coreutils       8.31 -> 8.32
curl            7.65.3 -> 7.71.1
file            5.36 -> 5.39
gawk            5.0.1 -> 5.1.0
gcc             9.2.0 -> 10.2.0
gettext         0.20.2 -> 0.21
git             2.26.2 -> 2.28.0
gmp             6.1.2 -> 6.2.0
grep            3.3 -> 3.4
libbsd          0.9.1 -> 0.10.0
ncurses         6.1 -> 6.2
perl            5.30.0 -> 5.32.0
sed             4.7 -> 4.8
texinfo         6.6 -> 6.7
xz              5.2.4 -> 5.2.5

Custom programs/libraries
-------------------------
astrometrynet   0.77 -> 0.80
automake        0.16.1 -> 0.16.2
bison           3.6 -> 3.7
cfitsio         3.47 -> 3.48
cmake           3.17.0 -> 3.18.1
freetype        2.9 -> 2.10.2
gdb             8.3 -> 9.2
ghostscript     9.50 -> 9.52
gnuastro        0.11 -> 0.12
libgit2         0.28.2 -> 1.0.1
libidn          1.35 -> 1.36
openmpi         4.0.1 -> 4.0.4
R               3.6.2 -> 4.0.2
python          3.7.4 -> 3.8.5
wcslib          6.4 -> 7.3
yaml            0.2.2 -> 0.2.5

Python modules
--------------
cython          0.29.6 -> 0.29.21
h5py            2.9.0 -> 2.10.0
matplotlib      3.1.1 -> 3.3.0
mpi4py          3.0.2 -> 3.0.3
numpy           1.17.2 -> 1.19.1
pybind11        2.4.3 -> 2.5.0
scipy           1.3.1 -> 1.5.2

1 files changed, 16 insertions, 15 deletions

diff --git a/reproduce/software/config/urls.conf b/reproduce/software/config/urls.conf
index 945537d..34c4d89 100644
--- a/reproduce/software/config/urls.conf
+++ b/reproduce/software/config/urls.conf
@@ -16,8 +16,8 @@
 
 
 # Basic/low-level programs and libraires (installed in any case)
-# --------------------------------------------------------------
-#bash-url = http://akhlaghi.org/maneage-software
+# -------------------------------------------------------------
+#bash-url = http://akhlaghi.org/src
 #binutils-url = http://ftp.gnu.org/gnu/binutils
 #bzip2-url = http://akhlaghi.org/maneage-software
 #cert-url = http://akhlaghi.org/maneage-software
@@ -86,7 +86,7 @@
 #cairo-url = https://www.cairographics.org/releases
 #cdsclient-url = http://cdsarc.u-strasbg.fr/ftp/pub/sw
 #cfitsio-url = https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c
-#cmake-url = $(shell majv=$$(echo $(cmake-version) | sed -e's/\./ /' | awk '{printf("%d.%d", $$1, $$2)}'); echo https://cmake.org/files/v$$majv/cmake-$(cmake-version).tar.gz)
+#cmake-url = $(shell majv=$$(echo $(cmake-version) | sed -e's/\./ /' | awk '{printf("%d.%d", $$1, $$2)}'); echo https://cmake.org/files/v$$majv)
 #eigen-url = http://bitbucket.org/eigen/eigen/get/$(eigen-version).tar.gz
 #expat-url = $(shell vstr=$$(echo $(expat-version) | sed -e's/\./_/g'); echo https://github.com/libexpat/libexpat/releases/download/R_$$vstr/expat-$(expat-version).tar.lz)
 #fftw-url = ftp://ftp.fftw.org/pub/fftw
@@ -94,22 +94,23 @@
 #freetype-url = https://download.savannah.gnu.org/releases/freetype
 #gdb-url = http://ftp.gnu.org/gnu/gdb
 #ghostscript-url = $(shell v=$$(echo $(ghostscript-version) | sed -e's/\.//'); echo https://github.com/ArtifexSoftware/ghostpdl-downloads/releases/download/gs$$v)
-#gs-fonts-std-url = https://downloads.sourceforge.net/gs-fonts
-#gs-fonts-gnu-url = https://downloads.sourceforge.net/gs-fonts
 #gnuastro-url = http://ftp.gnu.org/gnu/gnuastro
+#gperf-url = http://ftp.gnu.org/pub/gnu/gperf
+#gs-fonts-gnu-url = https://downloads.sourceforge.net/gs-fonts
+#gs-fonts-std-url = https://downloads.sourceforge.net/gs-fonts
 #gsl-url = http://ftp.gnu.org/gnu/gsl
 #hdf5-url = $(shell majorver=$$(echo $(hdf5-version) | sed -e 's/\./ /g' | awk '{printf("%d.%d", $$1, $$2)}'); echo https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$$majorver/hdf5-$(hdf5-version)/src)
 #healpix-url = http://akhlaghi.org/maneage-software
 #help2man-url = http://ftp.gnu.org/gnu/help2man
+#ibpaper-url=http://ftp.debian.org/debian/pool/main/libp/libpaper/
 #imagemagick-url = http://akhlaghi.org/maneage-software
 #imfit-url = http://www.mpe.mpg.de/~erwin/resources/imfit
 #lapack-url = http://www.netlib.org/lapack
 #libffi-url = ftp://sourceware.org/pub/libffi
+#libgit2-url = http://akhlaghi.org/src
 #libidn-url = https://ftp.gnu.org/gnu/libidn
-#libgit2-url = https://github.com/libgit2/libgit2/archive
 #libjpeg-url = http://ijg.org/files
 #libnsl-url = http://akhlaghi.org/maneage-software
-#ibpaper-url=http://ftp.debian.org/debian/pool/main/libp/libpaper/
 #libpng-url = https://download.sourceforge.net/libpng
 #libtiff-url = https://download.osgeo.org/libtiff
 #libtirpc-url = https://downloads.sourceforge.net/libtirpc
@@ -121,7 +122,7 @@
 #openssh-url = https://artfiles.org/openbsd/OpenSSH/portable
 #patch-url = http://ftp.gnu.org/gnu/patch
 #pixman-url = https://www.cairographics.org/releases
-#python-url = https://www.python.org/ftp/python/$(python-version)
+#python-url = http://akhlaghi.org/src
 #R-url = $(shell majver=$$(echo $(R-version) | sed -e's/\./ /g' | awk '{print $$1}'); echo https://cran.r-project.org/src/base/R-$$majver)
 #rpcsvc-proto-url = https://github.com/thkukuk/rpcsvc-proto/releases/download
 #scamp-url = http://akhlaghi.org/maneage-software
@@ -138,16 +139,16 @@
 
 # Xorg packages
 # -------------
-#util-macros-url = https://www.x.org/pub/individual/util
-#xorgproto-url = https://xorg.freedesktop.org/archive/individual/proto
+#fontconfig-url = https://www.freedesktop.org/software/fontconfig/release
+#libpthread-stubs-url = https://xcb.freedesktop.org/dist
+#libx11-url = https://www.x.org/pub/individual/lib
 #libxau-url = https://www.x.org/pub/individual/lib
 #libxdmcp-url = https://www.x.org/pub/individual/lib
+#libxext-url = https://www.x.org/pub/individual/lib
+#util-macros-url = https://www.x.org/pub/individual/util
 #xcb-proto-url = https://xorg.freedesktop.org/archive/individual/proto
-#fontconfig-url = https://www.freedesktop.org/software/fontconfig/release
+#xorgproto-url = https://xorg.freedesktop.org/archive/individual/proto
 #xtrans-url = https://www.x.org/pub/individual/lib
-#libx11-url = https://www.x.org/pub/individual/lib
-#libxext-url = https://www.x.org/pub/individual/lib
-#libpthread-stubs-url = https://xcb.freedesktop.org/dist
 
 
 
@@ -167,7 +168,7 @@
 # files" menu, you can download the source '.zip' file. For version 1.18.5,
 # (with full filename of 'numpy-1.18.5.zip') the link will be like this.
 #
-#  numpy-url = https://files.pythonhosted.org/packages/01/1b/d3ddcabd5817be02df0e6ee20d64f77ff6d0d97f83b77f65e98c8a651981/numpy-1.18.5.zip
+#  numpy-url = https://files.pythonhosted.org/packages/01/1b/d3ddcabd5817be02df0e6ee20d64f77ff6d0d97f83b77f65e98c8a651981
 #
 # Hence, if the version changes, the checksum, and its two top host
 # directories also change. This is why we aren't putting any URL here by