./project: make clean removes extra tex files in top source directory

Until now, the './project make clean' command would only clean (remove) the
PDF file from the top source directory. However, if a user would run LaTeX
outside of Maneage, many extra latex output such as *.aux, *.log, *.synctex
and etc would be produced in the top source directory. These files can
interfere with './project make'.

With this commit, when './project make clean' is run, any possibly existing
LaTeX temporary files will also be deleted from the top source directory.

This problem was first reported by Matin Torkian.

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