IMPORTANT (for Python users): Python environment updated (34 software)

Summary: this is software update that involves Astropy and its
dependencies. In case you are using any of those, it is recommended to
reproduce the analysis of your project to make sure that the calls to the
various packages have not changed. If you are not using Astropy or its
dependencies, this commit will not affect your analysis.

Until this commit, Astropy and the whole Python environment of its
prerequisites were last updated more than 2 years go. So after the update
of the Basic and some high-level (Gnuastro dependencies) software, it was
necessary to update Astropy and its dependencies (for those who use it).

With this commit, the software listed in the last item below have been
updated as well as the following minor technical fixes:

  - Support bug 110738 (https://savannah.nongnu.org/support/?110738): when
    the build directory had the same base-name as the source directory (for
    exapmle '/PATH/proj' and /PATH/proj-build'), Maneage would complain and
    not continue.

  - The Python software are now built using the wheels system with
    'gpep517' (https://pypi.org/project/gpep517). Python packages that are
    not required by astropy/matplotlib/scipy have mostly not been updated,
    but updating their dependencies and adding the build method as
    'GPEP517' should be straightforward.

  - Updated software (dependencies of Astropy). Those with 'N/A' in their
    previous version string weren't in Maneage prior to this commit.

    High-level software (not written in Python):

       boost                   1.77.0          1.87.0
       ninja build system      n/a             1.12.1
       openblas                0.3.21          0.3.29

    Python packages:

       python                  3.10.6          3.13.2
       astropy                 5.1             7.0.1
       astropy-iers-data       n/a             0.2025.2.24.0.34.4
       contourpy               n/a             1.3.1
       cppy                    n/a             1.3.1
       cycler                  0.11.0          0.12.1
       cython                  0.29.24         3.0.12
       extension-helpers       0.1             1.2.0
       features                n/a             0.5.12
       flit-core               n/a             3.11.0
       fonttools               n/a             4.56.0
       gpep517                 n/a             16
       kiwisolver              1.0.1           1.4.8
       matplotlib              3.3.0           3.10.0
       meson                   n/a             1.7.0
       meson-python            n/a             0.17.1
       numpy                   1.21.3          2.2.3
       packaging               21.3            24.2
       pillow                  8.4.0           11.1.0
       pybind11                2.5.0           2.13.6
       pyerfa-version          2.0.0.1         2.0.1.5
       pyproject-metadata      n/a             0.9.0
       pyparsing               3.0.4           3.2.1
       python-dateutil         2.8.0           2.9.0.post0
       python-installer        n/a             0.7.0
       pyyaml                  5.1             6.0.2
       setuptools              58.3.0          75.8.0
       setuptools_scm          3.3.3           8.2.0
       scipy                   1.7.3           1.15.2
       six                     1.16.0          1.17.0
       wheel                   0.37.0          0.45.1

1 files changed, 34 insertions, 22 deletions

diff --git a/reproduce/software/config/checksums.conf b/reproduce/software/config/checksums.conf
index 130c116..fd97fa8 100644
--- a/reproduce/software/config/checksums.conf
+++ b/reproduce/software/config/checksums.conf
@@ -82,7 +82,7 @@ atlas-checksum = 13634a63c686800bef8affcf4e8f5f89d08f485fc557eb1b9ba51a405926014
 autoconf-checksum = 99edec992950b85f7709323247772d1ec0f6ebfd2b066d83af65e856e8ab2facfab257f43d316fc5a8905fec0ce3c24768afd2873a1b85c795c8c120ae5f9277
 automake-checksum = f4b6485c7358554860b370d587bb5cd6c6c1050529eceb2bb0a0aecd408347405b3d1aa2c63e4a0aa38dc394178ea1e05599f1b5b6951c0e3d8f2f85639ffc71
 bison-checksum = 08c3e9bcf9fc01bc8b3a6c5e5f8ecdf628e07d6ce0874341e9df6d7b2925db7720a29b3be9a98d644f05a9e55e1130e5d182cb764e1481891414df93aeb2794f
-boost-checksum = cc7b78311538d6e8a6849d58da3b4d3062dc6b816f91a06b86609e6f1538d87ef9308c27af4db7a644e7c8e2b3de73c9f011a739e75262a0f36affdc313947f3
+boost-checksum = df252f6aabd9b1d5421afc478fa288e947a7c5e11f26e54f0a8619c9ac5e16688c20f44106a429ae798b20a4c97cbf800ee0ac9b2aa7febe1bd2755c88802ac1
 cairo-checksum = 5de8528196b450d01da5cd4562dec0dd8c31028b77640b6c611172f7c5ad1dc9a4d30bd4e38259344c3ee42b979e29be702a3190aae5fbf47c82c79ee0c14a8e
 cdsclient-checksum = 24584eedeb84ab4666cbd2ed0b7264c92c63c9cf090595b75b01dd46f848419d6a7e5cff4db3946695f879d0ee2bfbeb527e88c2be85e769b577302d9b2ad2b7
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@@ -121,14 +121,15 @@ libtirpc-checksum = bcb6b5c062c1301aa1246ec93ae0a5c1d221b8421126d020863517cb814b
 metastore-checksum = ac1230686535a652e95024abaf6c5585bdab36f4e092bee5fa4deff2a913cd60f3a6bd8020c6887ccab97f0da3a284a0d4619fad5464a269e7b2040d6f7e6aaf
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+openblas-checksum = c87485bb2b74cee175a6e631c63cb52fab174a2275d375c00680c4cbcd8d12a116223fda0349fc677cc9fe49794ce7b0342740855840df491b6141c8f2f4784a
 openmpi-checksum = 88c73fd708dd5fe3a893d5517425a8a4c3e252fae4715df9a9b0f2311abe94cf5f71be92f153820fbaeb32c7d0ac0175d5165bdadcadc731427309102182c1bd
 openssh-checksum = e280fa2d56f550efd37c5d2477670326261aa8b94d991f9eb17aad90e0c6c9c939efa90fe87d33260d0f709485cb05c379f0fd1bd44fc0d5190298b6398c9982
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+python-checksum = de940d7eceee69b8a04f12c613753f61db53ddac1c5cde5388dd342e88a09bae8da1f56b71b96f20997f6203d169e92e9e2558c43b38dbc323221d7bb362abfc
 r-cran-checksum = 54cc07956a70c09b5a533188eb063d2a9dc67a8aa5648ec7f9c107f626220c9f6e17ab7175e65dd54a8d608a1ca4106c8ad2856709eb995ab66439b5f033e725
 rpcsvc-proto-checksum = c3011d7d7ef97a4a751f6921df1a23e1dd8ac50fb0690c759d37010ed7be27968a2130e3b8872cb48d5914216f9d539096a424f1ec38a75f7ed899748151c6f4
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@@ -171,26 +172,33 @@ xtrans-checksum = 84f1142994f93882c9c68a4a85a218290c1c979162dbd4c5ee6b6becf0f96b
 # hash here.
 asn1crypto-checksum = 44d442a6ddfa971e31e24712fe084368356deb5e1c4c3b3e813e0910931860215bc1c4f9eb2c4bd4fdef607c324086c096e9357068646efd28c97f2d4f85c62f
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@@ -198,44 +206,48 @@ idna-checksum = 8ca5cfe6350c51250bafdac7c6e4ddd54c4a5d6bf7acbcef896760a759868c8e
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 pip-checksum = c6e13da3a57462371d32982c80575c5181592f5c6a8e70d60ec879e689442f4ad468e7aef97eb58c9da50a5a770385aa35e701eefd713a8e9fafeb12e11d956b
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 pycodestyle-checksum = 84e751a7d00048393b02ca743de5d71d1641e948ee1b4daebbdf2d07e0cd8f087ca4e81f826061114b40ef41920bbcd680c9f479e7cc1a159a70188425717208
 pycparser-checksum = 7f830e1c9066ee2d297a55e2bf6db4bf6447b6d9da0145d11a88c3bb98505755fb7986eafa6e06ae0b7680838f5e5d6a6d188245ca5ad45c2a727587bac93ab5
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 pyflakes-checksum = 7ebf5843b38146305c1063e070480fea8ec3b47fa1be546b1fafaeb242a688a5a001f978e7257fd71d5905b9a338b466ef17c7330725191587e9c40ba632c3f8
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 pypkgconfig-checksum = 1fd9aa973bd20a8fab864722598f1d19b94c23c7f2b522556b3182b19fe016bda7aa2be5e48a1b8fefa70a069611007d6d790e24defcb462e4594a382de85b00
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 pythran-checksum = 5d2d14480149b044ffc159990d2a9b02a236c54c348a899929f11637d0545fee7bb16806660aab6e096a22e1f2e220e344084e5d9c96b2318e51c16767b26c59
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 requests-checksum = 385e1d80993a21c09e7c4682500ca8c24155962ba41ecd8e73612722b2ff6618b736e827fc48ad1683b0d2bc7a420cfe680f5107860aca52656ef777f1d60104
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 secretstorage-checksum = 295e0f75c772edf153480730dc20051f06e60e040a18f169620cb4aaa37b8c1a254a496464d3794a38cf49fa884a7b561fe364816f0d12a5b2622c77259f03cf
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 setuptools-rust-checksum = cdebf61a2d55846104a3f2ff5eb0c1e268285d2e1f074dc0080b99faf74e3bfa55af9dd5ecd12aba97b37888b8bf5d7388d7b42f2b0b9e906c9860309ea5aceb
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 sip_tpv-checksum = 5e03279cb3650dd506332dfcb31aa4a20f23f55b8a29fd18da5c6d422d1b7dc49e12362ceae2ff7417c874401b5e87a73ca1ac0f3c8747c8984e4269cad56c3f
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 soupsieve-checksum = abdcbb6a13563e7afadd3056141587fdc3d7d644e346f789bca0a16242d860219e462491b0c624b287300af960fb8e3f85c79f5137580939a9fc8c3d6961478c
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 uncertainties-checksum = 5f09e75db2e4b2838858f2640a8427cd01cf691a6bec66e58f75125cb80515e2a7c164ef6d414dab2cb175a2cc696f42259729d0ebe4b4603f98e3f3ef9e262d
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 virtualenv-checksum = 3306f59bbcb48ceec225c07083e0b6831379b3e632e4a23c376849559449de1a04db66e0e7ceabb40ddcd3ae984a2a18dfdc4f1c38777d4bc04537f85a0137ac
 webencodings-checksum = b727b01bac6ec79bca517960d27b4c0668b295f25559471b9641c2c33dab55db6dac9c990952177964c6418382c22831b14d57df5e632d51d7abf97b61f24326
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 # R-CRAN packages
 # ---------------