diff options
| author | Mohammad Akhlaghi <mohammad@akhlaghi.org> | 2019-04-03 15:23:44 +0100 |
|---|---|---|
| committer | Mohammad Akhlaghi <mohammad@akhlaghi.org> | 2019-04-03 15:28:12 +0100 |
| commit | 2d500f26e9777fc395131301404cf06c0d1a2951 (patch) | |
| tree | 1f4f0a68b09534acb84b16c7286d71c900924597 /reproduce/config | |
| parent | aa9de365ae7f85488e8e53acd642cf657de251a8 (diff) | |
OpenMPI, HDF5 libraries added for h5py
After trying the build a system with no Python library, I noticed that
Python's HDF5 module (`h5py') needs the HDF5 library and OpenMPI (to work
in parallel). So they were added. Finally `h5py' uses the `mpi4py' module
to communicate with OpenMPI, so it was also added. However, for some
reason, mpi4py doesn't work with this version of OpenMPI (as described in
the comments above).
So for now, h5py doesn't use it and can only work on a single thread, while
the HDF5 C library links with OpenMPI with no problem.
Diffstat (limited to 'reproduce/config')
| -rw-r--r-- | reproduce/config/pipeline/dependency-versions.mk | 4 |
1 files changed, 3 insertions, 1 deletions
diff --git a/reproduce/config/pipeline/dependency-versions.mk b/reproduce/config/pipeline/dependency-versions.mk index cb5920e..4cb8a71 100644 --- a/reproduce/config/pipeline/dependency-versions.mk +++ b/reproduce/config/pipeline/dependency-versions.mk @@ -18,6 +18,7 @@ gmp-version = 6.1.2 gnuastro-version = 0.8 grep-version = 3.3 gzip-version = 1.10 +hdf5-version = 1.10.5 isl-version = 0.18 libbsd-version = 0.9.1 libffi-version = 3.2.1 @@ -29,6 +30,7 @@ metastore-version = 1.1.2-23-fa9170b mpfr-version = 4.0.2 mpc-version = 1.1.0 ncurses-version = 6.1 +openmpi-version = 4.0.1 openssl-version = 1.1.1a patchelf-version = 0.9 pkgconfig-version = 0.29.2 @@ -85,6 +87,7 @@ jeepney-version = 0.4 kiwisolver-version = 1.0.1 keyring-version = 18.0.0 matplotlib-version = 3.0.2 +mpi4py-version = 3.0.1 numpy-version = 1.16.2 pip-version = 19.0.2 pycparser-version = 2.19 @@ -100,4 +103,3 @@ soupsieve-version = 1.8 urllib3-version = 1.24.1 virtualenv-version = 16.4.0 webencodings-version = 0.5.1 - |