IMPORTANT: software config directly under reproduce/software/config

Until now the software configuration parameters were defined under the
`reproduce/software/config/installation/' directory. This was because the
configuration parameters of analysis software (for example Gnuastro's
configurations) were placed under there too. But this was terribly
confusing, because the run-time options of programs falls under the
"analysis" phase of the project.

With this commit, the Gnuastro configuration files have been moved under
the new `reproduce/analysis/config/gnuastro' directory and the software
configuration files are directly under `reproduce/software/config'. A clean
build was done with this change and it didn't crash, but it may cause
crashes in derived projects, so after merging with Maneage, please
re-configure your project to see if anything has been missed. Please let us
know if there is a problem.

4 files changed, 128 insertions, 0 deletions

diff --git a/reproduce/analysis/config/gnuastro/astbuildprog.conf b/reproduce/analysis/config/gnuastro/astbuildprog.conf
new file mode 100644
index 0000000..7adb4d1
--- /dev/null
+++ b/reproduce/analysis/config/gnuastro/astbuildprog.conf
@@ -0,0 +1,16 @@
+# BuildProgram's configuration file depends on the build and is installed
+# along with the rest of Gnuastro. So we'll set any specific configuration
+# we want here, then import those.
+#
+# Copyright (C) 2018-2020 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+#
+# Copying and distribution of this file, with or without modification, are
+# permitted in any medium without royalty provided the copyright notice and
+# this notice are preserved.  This file is offered as-is, without any
+# warranty.
+
+# To keep the program's compiled excutable file, comment this line.
+deletecompiled 1
+
+# Import the built configuration file
+config .local/etc/astbuildprog.conf
\ No newline at end of file
diff --git a/reproduce/analysis/config/gnuastro/astconvertt.conf b/reproduce/analysis/config/gnuastro/astconvertt.conf
new file mode 100644
index 0000000..770ac39
--- /dev/null
+++ b/reproduce/analysis/config/gnuastro/astconvertt.conf
@@ -0,0 +1,33 @@
+# Default parameters (System) for ConvertType.
+# ConvertType is part of GNU Astronomy Utitlies.
+#
+# Use the long option name of each parameter followed by a value. The name
+# and value should be separated by atleast one white-space character (for
+# example ` '[space], or tab). Lines starting with `#' are ignored.
+#
+# For more information, please run these commands:
+#
+#  $ astconvertt --help                  # Full list of options, short doc.
+#  $ astconvertt -P                      # Print all options and used values.
+#  $ info astconvertt                    # All options and input/output.
+#  $ info gnuastro "Configuration files" # How to use configuration files.
+#
+# Copyright (C) 2018-2020 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+#
+# Copying and distribution of this file, with or without modification, are
+# permitted in any medium without royalty provided the copyright notice and
+# this notice are preserved.  This file is offered as-is, without any
+# warranty.
+
+# Input:
+
+# Output:
+ quality              100
+ widthincm            10.0
+ borderwidth          1
+ output               jpg
+
+# Flux:
+ invert               0
+
+# Common options
diff --git a/reproduce/analysis/config/gnuastro/aststatistics.conf b/reproduce/analysis/config/gnuastro/aststatistics.conf
new file mode 100644
index 0000000..90f985d
--- /dev/null
+++ b/reproduce/analysis/config/gnuastro/aststatistics.conf
@@ -0,0 +1,36 @@
+# Default parameters (System) for Statistics.
+# Statistics is part of GNU Astronomy Utitlies.
+#
+# Use the long option name of each parameter followed by a value. The name
+# and value should be separated by atleast one white-space character (for
+# example ` '[space], or tab). Lines starting with `#' are ignored.
+#
+# For more information, please run these commands:
+#
+#  $ aststatistics --help                # Full list of options, short doc.
+#  $ aststatistics -P                    # Print all options and used values.
+#  $ info aststatistics                  # All options and input/output.
+#  $ info gnuastro "Configuration files" # How to use configuration files.
+#
+# Copyright (C) 2018-2020 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+#
+# Copying and distribution of this file, with or without modification, are
+# permitted in any medium without royalty provided the copyright notice and
+# this notice are preserved.  This file is offered as-is, without any
+# warranty.
+
+# Input image:
+
+# Sky and its STD settings
+ khdu                 1
+ meanmedqdiff     0.005
+ outliersigma        10
+ outliersclip     3,0.2
+ smoothwidth          3
+ sclipparams      3,0.1
+
+# Histogram and CFP settings
+ numasciibins        70
+ asciiheight         10
+ numbins            100
+ mirrordist         1.5
diff --git a/reproduce/analysis/config/gnuastro/gnuastro.conf b/reproduce/analysis/config/gnuastro/gnuastro.conf
new file mode 100644
index 0000000..82cb100
--- /dev/null
+++ b/reproduce/analysis/config/gnuastro/gnuastro.conf
@@ -0,0 +1,43 @@
+# Default values for the common options to all the programs in GNU
+# Astronomy Utitlies.
+#
+# IMPORTANT NOTE: The `lastconfig' option is very important in a
+# reproducible environment. Because we don't want any of Gnuastro's
+# programs to go into an un-controlled environment (user or system wide
+# configuration files).
+#
+# The rest of this configuration file is taken from the default Gnuastro
+# configuration from its source (`bin/gnuastro.conf').
+#
+# Copyright (C) 2018-2020 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+#
+# Copying and distribution of this file, with or without modification, are
+# permitted in any medium without royalty provided the copyright notice and
+# this notice are preserved.  This file is offered as-is, without any
+# warranty.
+
+# Local project settings (`config' has to be before `lastconfig').
+ config           .gnuastro/gnuastro-local.conf
+ lastconfig       1
+
+# Input:
+ hdu              1
+ ignorecase       1
+ searchin         name
+ stdintimeout     100000
+
+# Tessellation
+ tilesize         30,30
+ numchannels      1,1
+ remainderfrac    0.1
+ workoverch       0
+ interpmetric     radial
+ interpnumngb     9
+ interponlyblank  0
+
+# Output:
+ tableformat      fits-binary
+
+# Operating mode
+ quietmmap        0
+ minmapsize       2000000000