SWarp is now into the pipeline

SWarp resamples and co-adds together FITS images using any arbitrary
astrometric projection defined in the WCS standard. It is a very useful
program for astronomy and that is why we added it to the pipeline.

With this commit, we also cite the paper for Astrometry-net that until
now was missing.

6 files changed, 66 insertions, 42 deletions

diff --git a/.file-metadata b/.file-metadata
index af5792e..95076a8 100644
--- a/.file-metadata
+++ b/.file-metadata
diff --git a/reproduce/software/bibtex/astrometry-net.tex b/reproduce/software/bibtex/astrometry-net.tex
deleted file mode 100644
index 7e8d0be..0000000
--- a/reproduce/software/bibtex/astrometry-net.tex
+++ /dev/null
@@ -1,25 +0,0 @@
-%% Copyright (C) 2019 Raul Infante-Sainz <infantesainz@gmail.com>
-%%
-%% Copying and distribution of this file, with or without modification,
-%% are permitted in any medium without royalty provided the copyright
-%% notice and this notice are preserved.  This file is offered as-is,
-%% without any warranty.
-
-@ARTICLE{astrometrynet2010,
-       author = {{Lang}, Dustin and {Hogg}, David W. and {Mierle}, Keir and
-         {Blanton}, Michael and {Roweis}, Sam},
-        title = "{Astrometry.net: Blind Astrometric Calibration of Arbitrary Astronomical Images}",
-      journal = {\aj},
-     keywords = {astrometry, catalogs, instrumentation: miscellaneous, methods: data analysis, methods: statistical, techniques: image processing, Astrophysics - Instrumentation and Methods for Astrophysics},
-         year = "2010",
-        month = "May",
-       volume = {139},
-       number = {5},
-        pages = {1782},
-          doi = {10.1088/0004-6256/139/5/1782},
-archivePrefix = {arXiv},
-       eprint = {0910.2233},
- primaryClass = {astro-ph.IM},
-       adsurl = {https://ui.adsabs.harvard.edu/abs/2010AJ....139.1782L},
-      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
-}
diff --git a/reproduce/software/bibtex/astrometrynet.tex b/reproduce/software/bibtex/astrometrynet.tex
new file mode 100644
index 0000000..7bfe4c6
--- /dev/null
+++ b/reproduce/software/bibtex/astrometrynet.tex
@@ -0,0 +1,20 @@
+%% Copyright (C) 2019 Raul Infante-Sainz <infantesainz@gmail.com>
+%%
+%% Copying and distribution of this file, with or without modification,
+%% are permitted in any medium without royalty provided the copyright
+%% notice and this notice are preserved.  This file is offered as-is,
+%% without any warranty.
+
+@ARTICLE{astrometrynet,
+	doi = {10.1088/0004-6256/139/5/1782},
+	url = {https://doi.org/10.1088%2F0004-6256%2F139%2F5%2F1782},
+	year = 2010,
+	month = {mar},
+	publisher = {{IOP} Publishing},
+	volume = {139},
+	number = {5},
+	pages = {1782},
+	author = {Dustin Lang and David W. Hogg and Keir Mierle and Michael Blanton and Sam Roweis},
+	title = {{ASTROMETRY}.{NET}: {BLIND} {ASTROMETRIC} {CALIBRATION} {OF} {ARBITRARY} {ASTRONOMICAL} {IMAGES}},
+	journal = {The Astronomical Journal}
+}
diff --git a/reproduce/software/bibtex/swarp.tex b/reproduce/software/bibtex/swarp.tex
new file mode 100644
index 0000000..03111d6
--- /dev/null
+++ b/reproduce/software/bibtex/swarp.tex
@@ -0,0 +1,19 @@
+%% Copyright (C) 2019 Raul Infante-Sainz <infantesainz@gmail.com>
+%%
+%% Copying and distribution of this file, with or without modification,
+%% are permitted in any medium without royalty provided the copyright
+%% notice and this notice are preserved.  This file is offered as-is,
+%% without any warranty.
+
+@MISC{swarp,
+   author = {{Bertin}, E.},
+    title = "{SWarp: Resampling and Co-adding FITS Images Together}",
+ keywords = {Software },
+howpublished = {Astrophysics Source Code Library},
+     year = 2010,
+    month = oct,
+archivePrefix = "ascl",
+   eprint = {1010.068},
+   adsurl = {http://cdsads.u-strasbg.fr/abs/2010ascl.soft10068B},
+  adsnote = {Provided by the SAO/NASA Astrophysics Data System}
+}
diff --git a/reproduce/software/config/installation/versions.mk b/reproduce/software/config/installation/versions.mk
index 5f686a8..270eb97 100644
--- a/reproduce/software/config/installation/versions.mk
+++ b/reproduce/software/config/installation/versions.mk
@@ -17,7 +17,7 @@
 # <http://www.gnu.org/licenses/>.
 
 # C/C++ programs and libraries.
-astrometry-version         = 0.77
+astrometrynet-version      = 0.77
 atlas-version              = 3.10.3
 bash-version               = 5.0
 binutils-version           = 2.31.1
@@ -66,6 +66,7 @@ pkgconfig-version          = 0.29.2
 python-version             = 3.7.3
 readline-version           = 8.0
 sed-version                = 4.7
+swarp-version              = 2.38.0
 swig-version               = 3.0.12
 tar-version                = 1.32
 unzip-version              = 6.0
diff --git a/reproduce/software/make/high-level.mk b/reproduce/software/make/high-level.mk
index a904cae..144057e 100644
--- a/reproduce/software/make/high-level.mk
+++ b/reproduce/software/make/high-level.mk
@@ -51,7 +51,7 @@ ipydir  = $(BDIR)/software/installed/version-info/python
 # successfully on Mac (only static) and GNU/Linux (shared and static). But,
 # since it takes a few hours to build, it is not currently a target.
 top-level-libraries = # atlas
-top-level-programs  = astrometry-net gnuastro metastore
+top-level-programs  = astrometrynet gnuastro metastore swarp
 top-level-python    = astroquery matplotlib
 all: $(foreach p, $(top-level-libraries), $(ilidir)/$(p)) \
      $(foreach p, $(top-level-programs),  $(ibidir)/$(p)) \
@@ -139,6 +139,7 @@ tarballs = $(foreach t, astrometry.net-$(astrometry-version).tar.gz        \
                         openmpi-$(openmpi-version).tar.gz                  \
                         openblas-$(openblas-version).tar.gz                \
                         pixman-$(pixman-version).tar.gz                    \
+                        swarp-$(swarp-version).tar.gz                      \
                         swig-$(swig-version).tar.gz                        \
                         tiff-$(libtiff-version).tar.gz                     \
                         wcslib-$(wcslib-version).tar.bz2                   \
@@ -206,6 +207,7 @@ $(tarballs): $(tdir)/%: | $(lockdir)
 	    majorver=$$(echo $(openmpi-version) | sed -e 's/\./ /g' | awk '{printf("%d.%d", $$1, $$2)}')
 	    w=https://download.open-mpi.org/release/open-mpi/v$$majorver/$*
 	  elif [ $$n = pixman      ]; then w=https://www.cairographics.org/releases
+	  elif [ $$n = swarp       ]; then w=https://www.astromatic.net/download/swarp
 	  elif [ $$n = swig        ]; then w=https://sourceforge.net/projects/swig/files/swig/swig-$(swig-version)
 	  elif [ $$n = tiff        ]; then w=https://download.osgeo.org/libtiff
 	  elif [ $$n = wcslib      ]; then w=ftp://ftp.atnf.csiro.au/pub/software/wcslib
@@ -502,28 +504,28 @@ $(ilidir)/wcslib: $(tdir)/wcslib-$(wcslib-version).tar.bz2 \
 # Astrometry-net contains a lot of programs. We need to specify the
 # installation directory and the Python executable (by default it will look
 # for /usr/bin/python)
-$(ibidir)/astrometry-net: $(tdir)/astrometry.net-$(astrometry-version).tar.gz \
-                          $(ilidir)/cairo                                     \
-                          $(ilidir)/cfitsio                                   \
-                          $(ilidir)/gsl                                       \
-                          $(ilidir)/libjpeg                                   \
-                          $(ilidir)/libpng                                    \
-                          $(ibidir)/netpbm                                    \
-                          $(ipydir)/numpy                                     \
-                          $(ibidir)/python                                    \
-                          $(ibidir)/swig                                      \
-                          $(ilidir)/wcslib
+$(ibidir)/astrometrynet: $(tdir)/astrometry.net-$(astrometrynet-version).tar.gz \
+                         $(ilidir)/cairo                                        \
+                         $(ilidir)/cfitsio                                      \
+                         $(ilidir)/gsl                                          \
+                         $(ilidir)/libjpeg                                      \
+                         $(ilidir)/libpng                                       \
+                         $(ibidir)/netpbm                                       \
+                         $(ipydir)/numpy                                        \
+                         $(ibidir)/python                                       \
+                         $(ibidir)/swig                                         \
+                         $(ilidir)/wcslib
 	cd $(ddir)                                                            \
     && if ! tar xf $<; then echo; echo "Tar error"; exit 1; fi            \
-    && cd astrometry.net-$(astrometry-version)                            \
+    && cd astrometry.net-$(astrometrynet-version)                         \
     && make                                                               \
     && make py                                                            \
     && make extra                                                         \
     && make install INSTALL_DIR=$(idir) PYTHON_SCRIPT="$(ibdir)/python"   \
     && cd ..                                                              \
-    && rm -rf astrometry.net-$(astrometry-version)                        \
-	&& cp $(dtexdir)/astrometry-net.tex $(ictdir)/                        \
-    && echo "Astrometry-net $(astrometry-version)" > $@
+    && rm -rf astrometry.net-$(astrometrynet-version)                     \
+    && cp $(dtexdir)/astrometrynet.tex $(ictdir)/                         \
+    && echo "Astrometry.net $(astrometrynet-version) \citep{astrometrynet}" > $@
 
 
 
@@ -710,6 +712,13 @@ $(ibidir)/netpbm: $(tdir)/netpbm-$(netpbm-version).tgz   \
     && rm -rf $$unpackdir                                                  \
     && echo "Netpbm $(netpbm-version)" > $@
 
+$(ibidir)/swarp: $(tdir)/swarp-$(swarp-version).tar.gz \
+                 $(ilidir)/fftw
+	$(call gbuild, $<, swarp-$(swarp-version), static, \
+                   --enable-threads)                   \
+    && cp $(dtexdir)/swarp.tex $(ictdir)/              \
+    && echo "SWarp $(swarp-version) \citep{swarp}" > $@
+
 $(ibidir)/swig: $(tdir)/swig-$(swig-version).tar.gz
 	# Option --without-pcre was a suggestion once the configure step was
 	# tried and it failed. It was not recommended but it works!