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| author | Mohammad Akhlaghi <mohammad@akhlaghi.org> | 2019-12-14 04:28:47 +0000 |
|---|---|---|
| committer | Mohammad Akhlaghi <mohammad@akhlaghi.org> | 2019-12-14 04:30:43 +0000 |
| commit | ac80e3bc163a177c5b33ad2a1b8ab9f6f09becd8 (patch) | |
| tree | 929457b77d1634b8b3caa9955d454f9550350b3d | |
| parent | 8d65a9effe9fbd94cb0141e8a5c511ad8d6cda9d (diff) | |
Core R package is now in template
With this commit, we now have the core R interpretter within the
template. We should later include instructions to install R packages
(possibly in a separate top-level Makefile like Python).
| -rw-r--r-- | reproduce/software/config/installation/checksums.mk | 1 | ||||
| -rw-r--r-- | reproduce/software/config/installation/versions.mk | 1 | ||||
| -rw-r--r-- | reproduce/software/make/high-level.mk | 14 |
3 files changed, 16 insertions, 0 deletions
diff --git a/reproduce/software/config/installation/checksums.mk b/reproduce/software/config/installation/checksums.mk index 1a56016..999d057 100644 --- a/reproduce/software/config/installation/checksums.mk +++ b/reproduce/software/config/installation/checksums.mk @@ -115,6 +115,7 @@ openmpi-checksum = 760716974cb6b25ad820184622e1ee7926bc6fda87db6b574f76792bc1ca9 openssh-checksum = e280fa2d56f550efd37c5d2477670326261aa8b94d991f9eb17aad90e0c6c9c939efa90fe87d33260d0f709485cb05c379f0fd1bd44fc0d5190298b6398c9982 pixman-checksum = 1b0205dbe9d9185c68813ce577a889f3c83e83fbd9955c3a72d411c3b476e6be93fc246b5b6ef4ee17e2bb8eb6fb5559e01dff7feb6a6c4c6314f980e960d690 python-checksum = c25a72ad792f7c1b4c2f79faebbe9608d04b04b2fe58ab804cb4732cdaa75ea93d175f5e52b38e91cb6ae0559ea6b645d802c8b6a869584e8bb9b5018367ce3d +R-checksum = 17513e9f4dd27c61c11f7aa45227aeeeefb375bf5d4e193b471724f379a1b2da33e127cbe91aa175cbbbb048b892047e2f610280585c8159242a6c94790b07f9 rpcsvc-proto-checksum = c3011d7d7ef97a4a751f6921df1a23e1dd8ac50fb0690c759d37010ed7be27968a2130e3b8872cb48d5914216f9d539096a424f1ec38a75f7ed899748151c6f4 scamp-checksum = 35034a367d2cd09dc51e727e0f23ef6234edc0d978fd71cda1e80391d86af160138cb57281f7f7f9047e35b1246a0de6b235414086a62524413ed423f498583f scons-checksum = 0477038b014674049f12899b64584d44a85283d521b2422561e42020a5ae296a5af005684087c3ff410ed3fcbdcc5ff61998bc429eb29513f2a864138ffc4945 diff --git a/reproduce/software/config/installation/versions.mk b/reproduce/software/config/installation/versions.mk index 97a5e1a..05fa631 100644 --- a/reproduce/software/config/installation/versions.mk +++ b/reproduce/software/config/installation/versions.mk @@ -111,6 +111,7 @@ openmpi-version = 4.0.1 openssh-version = 8.0p1 pixman-version = 0.38.0 python-version = 3.7.4 +R-version = 3.6.2 rpcsvc-proto-version = 1.4 scamp-version = 2.6.7 scons-version = 3.0.5 diff --git a/reproduce/software/make/high-level.mk b/reproduce/software/make/high-level.mk index 56af4b9..f6c2f76 100644 --- a/reproduce/software/make/high-level.mk +++ b/reproduce/software/make/high-level.mk @@ -171,6 +171,7 @@ tarballs = $(foreach t, apachelog4cxx-$(apachelog4cxx-version).tar.lz \ openmpi-$(openmpi-version).tar.gz \ openssh-$(openssh-version).tar.gz \ pixman-$(pixman-version).tar.gz \ + R-$(R-version).tar.gz \ scamp-$(scamp-version).tar.lz \ scons-$(scons-version).tar.gz \ sextractor-$(sextractor-version).tar.lz \ @@ -267,6 +268,9 @@ $(tarballs): $(tdir)/%: | $(lockdir) w=https://download.open-mpi.org/release/open-mpi/v$$majorver/$* elif [ $$n = openssh ]; then c=$(openssh-checksum); w=https://artfiles.org/openbsd/OpenSSH/portable elif [ $$n = pixman ]; then c=$(pixman-checksum); w=https://www.cairographics.org/releases + elif [ $$n = R ]; then c=$(R-checksum); + majver=$$(echo $(R-version) | sed -e's/\./ /g' | awk '{print $$1}') + w=https://cran.r-project.org/src/base/R-$$majver elif [ $$n = rpcsvc ]; then c=$(rpcsvc-proto-checksum); w=https://github.com/thkukuk/rpcsvc-proto/releases/download/v$(rpcsvc-proto-version) elif [ $$n = scamp ]; then c=$(scamp-checksum); w=http://akhlaghi.org/reproduce-software elif [ $$n = scons ]; then @@ -1024,6 +1028,16 @@ $(ibidir)/netpbm: $(ibidir)/unzip \ && rm -rf $$unpackdir \ && echo "Netpbm $(netpbm-version)" > $@ +# R programming language +$(ibidir)/R: $(ibidir)/libpng \ + $(ibidir)/libjpeg \ + $(ibidir)/libtiff \ + | $(tdir)/R-$(R-version).tar.gz + export R_SHELL=$(SHELL); \ + $(call gbuild, R-$(R-version), static, \ + --without-x --with-readline) \ + && echo "R $(R-version)" > $@ + # SCAMP documentation says ATLAS is a mandatory prerequisite for using # SCAMP. We have ATLAS into the project but there are some problems with the # libraries that are not yet solved. However, we tried to install it with |