Copyright notice added to all files missing one

Until now, for short files, we only had a license notice, not an actual
copyright notice. With this commit, a copyright notice has also been
added. We use this new command to find these files, suggested by
`ineiev@gnu.org'.

16 files changed, 46 insertions, 13 deletions

diff --git a/.dir-locals.el b/.dir-locals.el
index 3ffb548..20d5a6e 100644
--- a/.dir-locals.el
+++ b/.dir-locals.el
@@ -9,6 +9,8 @@
 ;;
 ;; For more information see (info "(emacs) Directory Variables")
 ;;
+;; Copyright (C) 2018-2019 Mohammad Akhlaghi.
+;;
 ;; Copying and distribution of this file, with or without modification,
 ;; are permitted in any medium without royalty provided the copyright
 ;; notice and this notice are preserved.  This file is offered as-is,
diff --git a/.gitignore b/.gitignore
index 2808dc1..c612cc2 100644
--- a/.gitignore
+++ b/.gitignore
@@ -9,6 +9,8 @@
 # To help readability, please add new files based on the length of the
 # line you wish to add.
 #
+# Copyright (C) 2018-2019 Mohammad Akhlaghi.
+#
 # Copying and distribution of this file, with or without modification,
 # are permitted in any medium without royalty provided the copyright
 # notice and this notice are preserved.  This file is offered as-is,
diff --git a/README-hacking.md b/README-hacking.md
index ed9f153..eddac1a 100644
--- a/README-hacking.md
+++ b/README-hacking.md
@@ -516,18 +516,20 @@ advanced in later stages of your work.
      git remote add origin XXXXXXXXXX
      ```
 
- - **Copyright**, **name** and **date**: Go over the existing scripting
-     files and add your name and email to the copyright notice. You can
-     find the files by searching for the placeholder email
-     `your@email.address` (which you should change) with the command below
-     (you can ignore this file, and any in the `tex/` directory). Don't
-     forget to add your name after the copyright year also. When making new
-     files, always remember to add a similar copyright statement at the top
-     of the file and also ask your colleagues to do so when they edit a
-     file. This is very important.
+ - **Copyright**, **name** and **date**: All the "copyrightable" files
+     (those larger than 10 lines) must have a copyright statement and
+     license notice. As you progress with the project and modify files to
+     customize for your project change the copyright owner to your self
+     (since this template is free software, you can do this after you edit
+     any part of it). Also, don't forget to add similar notices to new
+     files you add for your own project. You can always find the files
+     without a copyright notice using this command:
 
      ```shell
-     $ grep -r your@email.address ./*
+     find . -type f ! -path ./.git/\* \
+       | while read i; do \
+           grep -qi 'copyright \((c)\|[&]copy;\|@copyright\)' $i || echo $i;\
+         done
      ```
 
  - **Title**, **short description** and **author** in source files: In this
diff --git a/README.md b/README.md
index 8bd75ae..bd4dab0 100644
--- a/README.md
+++ b/README.md
@@ -1,9 +1,9 @@
-Copyright (C) 2018-2019 Mohammad Akhlaghi.
-See the end of the file for license conditions.
-
 Reproduction pipeline for paper XXXXXXX
 =======================================
 
+Copyright (C) 2018-2019 Mohammad Akhlaghi.
+See the end of the file for license conditions.
+
 This is the reproduction pipeline for the paper titled "**XXXXXX**", by
 XXXXXXXX et al. (**IN PREPARATION**). To learn more about the purpose,
 principles and technicalities of this reproducible paper, please see
@@ -91,6 +91,9 @@ Copyright information
 This file is part of the reproducible paper template
    https://gitlab.com/makhlaghi/reproducible-paper
 
+Copyright (C) 2018-2019 Mohammad Akhlaghi.
+See the end of the file for license conditions.
+
 This template is free software: you can redistribute it and/or modify it
 under the terms of the GNU General Public License as published by the Free
 Software Foundation, either version 3 of the License, or (at your option)
diff --git a/reproduce/config/gnuastro/astbuildprog.conf b/reproduce/config/gnuastro/astbuildprog.conf
index a6da3c4..6feb1ac 100644
--- a/reproduce/config/gnuastro/astbuildprog.conf
+++ b/reproduce/config/gnuastro/astbuildprog.conf
@@ -2,6 +2,8 @@
 # along with the rest of Gnuastro. So we'll set any specific configuration
 # we want here, then import those.
 #
+# Copyright (C) 2018-2019 Mohammad Akhlaghi.
+#
 # Copying and distribution of this file, with or without modification, are
 # permitted in any medium without royalty provided the copyright notice and
 # this notice are preserved.  This file is offered as-is, without any
diff --git a/reproduce/config/gnuastro/astconvertt.conf b/reproduce/config/gnuastro/astconvertt.conf
index fc3ba04..6558edd 100644
--- a/reproduce/config/gnuastro/astconvertt.conf
+++ b/reproduce/config/gnuastro/astconvertt.conf
@@ -12,6 +12,8 @@
 #  $ info astconvertt                    # All options and input/output.
 #  $ info gnuastro "Configuration files" # How to use configuration files.
 #
+# Copyright (C) 2018-2019 Mohammad Akhlaghi.
+#
 # Copying and distribution of this file, with or without modification, are
 # permitted in any medium without royalty provided the copyright notice and
 # this notice are preserved.  This file is offered as-is, without any
diff --git a/reproduce/config/gnuastro/aststatistics.conf b/reproduce/config/gnuastro/aststatistics.conf
index 0bf3b83..3ace941 100644
--- a/reproduce/config/gnuastro/aststatistics.conf
+++ b/reproduce/config/gnuastro/aststatistics.conf
@@ -12,6 +12,8 @@
 #  $ info aststatistics                  # All options and input/output.
 #  $ info gnuastro "Configuration files" # How to use configuration files.
 #
+# Copyright (C) 2018-2019 Mohammad Akhlaghi.
+#
 # Copying and distribution of this file, with or without modification, are
 # permitted in any medium without royalty provided the copyright notice and
 # this notice are preserved.  This file is offered as-is, without any
diff --git a/reproduce/config/gnuastro/gnuastro.conf b/reproduce/config/gnuastro/gnuastro.conf
index 20ba4a9..3d53e06 100644
--- a/reproduce/config/gnuastro/gnuastro.conf
+++ b/reproduce/config/gnuastro/gnuastro.conf
@@ -10,6 +10,8 @@
 # pipeline is taken from the default Gnuastro configuration from its
 # source (`bin/gnuastro.conf').
 #
+# Copyright (C) 2018-2019 Mohammad Akhlaghi.
+#
 # Copying and distribution of this file, with or without modification, are
 # permitted in any medium without royalty provided the copyright notice and
 # this notice are preserved.  This file is offered as-is, without any
diff --git a/reproduce/config/pipeline/INPUTS.mk b/reproduce/config/pipeline/INPUTS.mk
index 6d08d9f..7f5a4c1 100644
--- a/reproduce/config/pipeline/INPUTS.mk
+++ b/reproduce/config/pipeline/INPUTS.mk
@@ -2,6 +2,8 @@
 #
 # This file is read by the configure script and running Makefiles.
 #
+# Copyright (C) 2018-2019 Mohammad Akhlaghi.
+#
 # Copying and distribution of this file, with or without modification, are
 # permitted in any medium without royalty provided the copyright notice and
 # this notice are preserved.  This file is offered as-is, without any
diff --git a/reproduce/config/pipeline/LOCAL.mk.in b/reproduce/config/pipeline/LOCAL.mk.in
index 00b907a..b986520 100644
--- a/reproduce/config/pipeline/LOCAL.mk.in
+++ b/reproduce/config/pipeline/LOCAL.mk.in
@@ -3,6 +3,8 @@
 # This is just a template for the `./configure' script to fill in. Please
 # don't make any change to this file.
 #
+# Copyright (C) 2018-2019 Mohammad Akhlaghi.
+#
 # Copying and distribution of this file, with or without modification, are
 # permitted in any medium without royalty provided the copyright notice and
 # this notice are preserved.  This file is offered as-is, without any
diff --git a/reproduce/config/pipeline/dependency-numpy-scipy.cfg b/reproduce/config/pipeline/dependency-numpy-scipy.cfg
index 642e061..d250b5b 100644
--- a/reproduce/config/pipeline/dependency-numpy-scipy.cfg
+++ b/reproduce/config/pipeline/dependency-numpy-scipy.cfg
@@ -7,6 +7,8 @@
 # appropriate sections. Not all packages will use all sections so you
 # should leave out sections that your package does not use.
 #
+# Copyright (C) 2018-2019 Mohammad Akhlaghi.
+#
 # Copying and distribution of this file, with or without modification, are
 # permitted in any medium without royalty provided the copyright notice and
 # this notice are preserved.  This file is offered as-is, without any
diff --git a/reproduce/config/pipeline/dependency-texlive.mk b/reproduce/config/pipeline/dependency-texlive.mk
index 71c0648..0e3b4ff 100644
--- a/reproduce/config/pipeline/dependency-texlive.mk
+++ b/reproduce/config/pipeline/dependency-texlive.mk
@@ -4,6 +4,8 @@
 # name to this variable (you can check in `ctan.org' to find the official
 # name).
 #
+# Copyright (C) 2018-2019 Mohammad Akhlaghi.
+#
 # Copying and distribution of this file, with or without modification, are
 # permitted in any medium without royalty provided the copyright notice and
 # this notice are preserved.  This file is offered as-is, without any
diff --git a/reproduce/config/pipeline/pdf-build.mk b/reproduce/config/pipeline/pdf-build.mk
index ee421ab..ccf9f64 100644
--- a/reproduce/config/pipeline/pdf-build.mk
+++ b/reproduce/config/pipeline/pdf-build.mk
@@ -12,6 +12,8 @@
 # LaTeX. Otherwise, a notice will just printed that for now, no PDF will be
 # created.
 #
+# Copyright (C) 2018-2019 Mohammad Akhlaghi.
+#
 # Copying and distribution of this file, with or without modification, are
 # permitted in any medium without royalty provided the copyright notice and
 # this notice are preserved.  This file is offered as-is, without any
diff --git a/reproduce/config/pipeline/texlive.conf b/reproduce/config/pipeline/texlive.conf
index 1f515c1..0010c70 100644
--- a/reproduce/config/pipeline/texlive.conf
+++ b/reproduce/config/pipeline/texlive.conf
@@ -3,6 +3,8 @@
 # installdir: Install directory
 # topdir:     Top pipeline directory
 #
+# Copyright (C) 2018-2019 Mohammad Akhlaghi.
+#
 # Copying and distribution of this file, with or without modification, are
 # permitted in any medium without royalty provided the copyright notice and
 # this notice are preserved.  This file is offered as-is, without any
diff --git a/reproduce/src/bash/git-post-checkout b/reproduce/src/bash/git-post-checkout
index a56c21f..12fbc9c 100644
--- a/reproduce/src/bash/git-post-checkout
+++ b/reproduce/src/bash/git-post-checkout
@@ -3,6 +3,8 @@
 # The example hook script to store the metadata information of version
 # controlled files (with each commit) using the `metastore' program.
 #
+# Copyright (C) 2018-2019 Mohammad Akhlaghi.
+#
 # This script is taken from the `examples/hooks/pre-commit' file of the
 # `metastore' package (installed within the pipeline, with an MIT license
 # for copyright). We have just changed the name of the `MSFILE' and also
diff --git a/reproduce/src/bash/git-pre-commit b/reproduce/src/bash/git-pre-commit
index cd06c25..424df04 100644
--- a/reproduce/src/bash/git-pre-commit
+++ b/reproduce/src/bash/git-pre-commit
@@ -3,6 +3,8 @@
 # The example hook script to store the metadata information of version
 # controlled files (with each commit) using the `metastore' program.
 #
+# Copyright (C) 2018-2019 Mohammad Akhlaghi.
+#
 # This script is taken from the `examples/hooks/pre-commit' file of the
 # `metastore' package (installed within the pipeline, with an MIT license
 # for copyright). We have just changed the name of the `MSFILE' and also