diff options
Diffstat (limited to 'tex/src')
| -rw-r--r-- | tex/src/figure-data-lineage.tex | 46 | ||||
| -rw-r--r-- | tex/src/figure-file-architecture.tex | 44 | ||||
| -rw-r--r-- | tex/src/preamble-style.tex | 2 |
3 files changed, 49 insertions, 43 deletions
diff --git a/tex/src/figure-data-lineage.tex b/tex/src/figure-data-lineage.tex index d849e8c..aa2a397 100644 --- a/tex/src/figure-data-lineage.tex +++ b/tex/src/figure-data-lineage.tex @@ -1,24 +1,25 @@ -\newcommand{\paperpdf}{} -\newcommand{\papertex}{} -\newcommand{\projecttex}{} -\newcommand{\verifytex}{} -\newcommand{\initializetex}{} -\newcommand{\downloadtex}{} -\newcommand{\inputtwo}{} -\newcommand{\inputsconf}{} -\newcommand{\analysisonetex}{} -\newcommand{\outoneb}{} -\newcommand{\outonebdep}{} -\newcommand{\inputone}{} -\newcommand{\inputonedep}{} -\newcommand{\analysistwotex}{} -\newcommand{\outtwob}{} -\newcommand{\outtwobdep}{} -\newcommand{\analysisthreetex}{} -\newcommand{\analysisthreeouts}{} -\newcommand{\outtwoa}{} -\newcommand{\outtwoadep}{} -\newcommand{\outthreeadep}{} +% All macros commented % 1 +\newcommand{\paperpdf}{} % 2 +\newcommand{\papertex}{} % 3 +\newcommand{\projecttex}{} % 4 +\newcommand{\verifytex}{} % 5 +\newcommand{\initializetex}{} % 6 +\newcommand{\downloadtex}{} % 7 +\newcommand{\inputtwo}{} % 8 +\newcommand{\inputsconf}{} % 9 +\newcommand{\analysisonetex}{} % 10 +\newcommand{\outoneb}{} % 11 +\newcommand{\outonebdep}{} % 12 +\newcommand{\inputone}{} % 13 +\newcommand{\inputonedep}{} % 14 +\newcommand{\analysistwotex}{} % 15 +\newcommand{\outtwob}{} % 16 +\newcommand{\outtwobdep}{} % 17 +\newcommand{\analysisthreetex}{} % 18 +\newcommand{\analysisthreeouts}{} % 19 +\newcommand{\outtwoa}{} % 20 +\newcommand{\outtwoadep}{} % 21 +\newcommand{\outthreeadep}{} % 22 @@ -96,7 +97,10 @@ %% paper.tex \ifdefined\papertex + \node (reftex) [node-nonterminal, at={(2.67cm,-4.2cm)}] {references.tex}; \node (papertex) [node-nonterminal, at={(5.47cm,-4.2cm)}] {paper.tex}; + \node (papertex-north) [node-point, at={(5.47cm,-3.58cm)}] {}; + \draw [rounded corners] (reftex) |- (papertex-north); \draw [->] (papertex) -- (paperpdf); \fi diff --git a/tex/src/figure-file-architecture.tex b/tex/src/figure-file-architecture.tex index c892232..a4d4755 100644 --- a/tex/src/figure-file-architecture.tex +++ b/tex/src/figure-file-architecture.tex @@ -54,7 +54,7 @@ \fi %% reproduce/software/bash - \node [dirbox, at={(-5.75cm,-0.8cm)}, minimum width=2.6cm, minimum height=2.1cm, + \node [dirbox, at={(-5.75cm,-0.8cm)}, minimum width=2.6cm, minimum height=1.6cm, label={[shift={(0,-5mm)}]\texttt{bash/}}, fill=brown!25!white] {}; \ifdefined\fullfilearchitecture \node [node-nonterminal-thin, at={(-5.75cm,-1.5cm)}] {bashrc.sh}; @@ -75,32 +75,34 @@ label={[shift={(0,-5mm)}]\texttt{analysis/}}, fill=brown!20!white] {}; %% reproduce/analysis/config - \node [dirbox, at={(0.15cm,1.5cm)}, minimum width=2.6cm, minimum height=2.1cm, + \node [dirbox, at={(0.15cm,1.5cm)}, minimum width=2.6cm, minimum height=2.6cm, label={[shift={(0,-5mm)}]\texttt{config/}}, fill=brown!25!white] {}; \node [node-nonterminal-thin, at={(0.15cm,0.8cm)}] {INPUTS.conf}; \node [node-nonterminal-thin, at={(0.15cm,0.3cm)}] {param-1.conf}; - \node [node-nonterminal-thin, at={(0.15cm,-0.2cm)}] {param-2.conf}; + \node [node-nonterminal-thin, at={(0.15cm,-0.2cm)}] {param-2a.conf}; + \node [node-nonterminal-thin, at={(0.15cm,-0.7cm)}] {param-2b.conf}; %% reproduce/analysis/make - \node [dirbox, at={(2.95cm,1.5cm)}, minimum width=2.6cm, minimum height=2.1cm, + \node [dirbox, at={(2.95cm,1.5cm)}, minimum width=2.6cm, minimum height=2.6cm, label={[shift={(0,-5mm)}]\texttt{make/}}, fill=brown!25!white] {}; - \node [node-nonterminal-thin, at={(2.95cm,0.8cm)}] {initialize.mk}; - \node [node-nonterminal-thin, at={(2.95cm,0.3cm)}] {download.mk}; - \node [node-nonterminal-thin, at={(2.95cm,-0.2cm)}] {analysis-1.mk}; + \node [node-nonterminal-thin, at={(2.95cm,0.8cm)}] {top-prepare.mk}; + \node [node-nonterminal-thin, at={(2.95cm,0.3cm)}] {top-make.mk}; + \node [node-nonterminal-thin, at={(2.95cm,-0.2cm)}] {initialize.mk}; + \node [node-nonterminal-thin, at={(2.95cm,-0.7cm)}] {analysis1.mk}; %% reproduce/analysis/bash - \node [dirbox, at={(0.15cm,-0.8cm)}, minimum width=2.6cm, minimum height=2.1cm, + \node [dirbox, at={(0.15cm,-1.3cm)}, minimum width=2.6cm, minimum height=1.1cm, label={[shift={(0,-5mm)}]\texttt{bash/}}, fill=brown!25!white] {}; \ifdefined\fullfilearchitecture - \node [node-nonterminal-thin, at={(0.15cm,-1.5cm)}] {process-A.sh}; + \node [node-nonterminal-thin, at={(0.15cm,-2.0cm)}] {process-A.sh}; \fi %% reproduce/analysis/python - \node [dirbox, at={(2.95cm,-0.8cm)}, minimum width=2.6cm, minimum height=2.1cm, + \node [dirbox, at={(2.95cm,-1.3cm)}, minimum width=2.6cm, minimum height=1.6cm, label={[shift={(0,-5mm)}]\texttt{python/}}, fill=brown!25!white] {}; \ifdefined\fullfilearchitecture - \node [node-nonterminal-thin, at={(2.95cm,-1.5cm)}] {operation-B.py}; - \node [node-nonterminal-thin, at={(2.95cm,-2.0cm)}] {fitting-plot.py}; + \node [node-nonterminal-thin, at={(2.95cm,-2.0cm)}] {operation-B.py}; + \node [node-nonterminal-thin, at={(2.95cm,-2.5cm)}] {fitting-plot.py}; \fi %% tex/ @@ -108,28 +110,28 @@ label={[shift={(0,-5mm)}]\texttt{tex/}}, fill=brown!15!white] {}; %% tex/src - \node [dirbox, at={(6cm,2.1cm)}, minimum width=2.5cm, minimum height=2.1cm, + \node [dirbox, at={(6cm,2.1cm)}, minimum width=2.5cm, minimum height=1.6cm, label={[shift={(0,-5mm)}]\texttt{src/}}, fill=brown!20!white] {}; + \node [node-nonterminal-thin, at={(6cm,1.4cm)}] {references.tex}; \ifdefined\fullfilearchitecture - \node [node-nonterminal-thin, at={(6cm,1.4cm)}] {preamble-1.tex}; \node [node-nonterminal-thin, at={(6cm,0.9cm)}] {figure-1.tex}; \fi %% tex/build \ifdefined\fullfilearchitecture - \node [dirbox, at={(6cm,-0.2cm)}, minimum width=2.5cm, minimum height=1.3cm, + \node [dirbox, at={(6cm,0.1cm)}, minimum width=2.5cm, minimum height=1.3cm, label={[shift={(0,-5mm)}]\texttt{build/}}, dashed, , fill=brown!20!white] {}; - \node [anchor=west, at={(4.7cm,-1.0cm)}] {\scriptsize\sf Symbolic link to}; - \node [anchor=west, at={(4.7cm,-1.3cm)}] {\scriptsize\sf \LaTeX{} build directory.}; + \node [anchor=west, at={(4.7cm,-0.7cm)}] {\scriptsize\sf Symbolic link to}; + \node [anchor=west, at={(4.7cm,-1.0cm)}] {\scriptsize\sf \LaTeX{} build directory.}; \fi %% tex/tikz \ifdefined\fullfilearchitecture - \node [dirbox, at={(6cm,-1.7cm)}, minimum width=2.5cm, minimum height=1.6cm, + \node [dirbox, at={(6cm,-1.6cm)}, minimum width=2.5cm, minimum height=1.6cm, label={[shift={(0,-5mm)}]\texttt{tikz/}}, dashed, fill=brown!20!white] {}; - \node [anchor=west, at={(4.67cm,-2.5cm)}] {\scriptsize\sf Symbolic link to TikZ}; - \node [anchor=west, at={(4.67cm,-2.8cm)}] {\scriptsize\sf directory (figures built}; - \node [anchor=west, at={(4.67cm,-3.1cm)}] {\scriptsize\sf by \LaTeX).}; + \node [anchor=west, at={(4.67cm,-2.4cm)}] {\scriptsize\sf Symbolic link to TikZ}; + \node [anchor=west, at={(4.67cm,-2.7cm)}] {\scriptsize\sf directory (figures built}; + \node [anchor=west, at={(4.67cm,-3.0cm)}] {\scriptsize\sf by \LaTeX).}; \fi %% .local diff --git a/tex/src/preamble-style.tex b/tex/src/preamble-style.tex index fe36eec..c3aeca2 100644 --- a/tex/src/preamble-style.tex +++ b/tex/src/preamble-style.tex @@ -136,4 +136,4 @@ } %% Custom macros -\newcommand{\inlinecode}[1]{`\textcolor{blue!35!black}{\texttt{#1}}'} +\newcommand{\inlinecode}[1]{\textcolor{blue!35!black}{\texttt{#1}}} |