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-rw-r--r--tex/src/figure-data-lineage.tex46
-rw-r--r--tex/src/figure-file-architecture.tex44
-rw-r--r--tex/src/preamble-style.tex2
3 files changed, 49 insertions, 43 deletions
diff --git a/tex/src/figure-data-lineage.tex b/tex/src/figure-data-lineage.tex
index d849e8c..aa2a397 100644
--- a/tex/src/figure-data-lineage.tex
+++ b/tex/src/figure-data-lineage.tex
@@ -1,24 +1,25 @@
-\newcommand{\paperpdf}{}
-\newcommand{\papertex}{}
-\newcommand{\projecttex}{}
-\newcommand{\verifytex}{}
-\newcommand{\initializetex}{}
-\newcommand{\downloadtex}{}
-\newcommand{\inputtwo}{}
-\newcommand{\inputsconf}{}
-\newcommand{\analysisonetex}{}
-\newcommand{\outoneb}{}
-\newcommand{\outonebdep}{}
-\newcommand{\inputone}{}
-\newcommand{\inputonedep}{}
-\newcommand{\analysistwotex}{}
-\newcommand{\outtwob}{}
-\newcommand{\outtwobdep}{}
-\newcommand{\analysisthreetex}{}
-\newcommand{\analysisthreeouts}{}
-\newcommand{\outtwoa}{}
-\newcommand{\outtwoadep}{}
-\newcommand{\outthreeadep}{}
+% All macros commented % 1
+\newcommand{\paperpdf}{} % 2
+\newcommand{\papertex}{} % 3
+\newcommand{\projecttex}{} % 4
+\newcommand{\verifytex}{} % 5
+\newcommand{\initializetex}{} % 6
+\newcommand{\downloadtex}{} % 7
+\newcommand{\inputtwo}{} % 8
+\newcommand{\inputsconf}{} % 9
+\newcommand{\analysisonetex}{} % 10
+\newcommand{\outoneb}{} % 11
+\newcommand{\outonebdep}{} % 12
+\newcommand{\inputone}{} % 13
+\newcommand{\inputonedep}{} % 14
+\newcommand{\analysistwotex}{} % 15
+\newcommand{\outtwob}{} % 16
+\newcommand{\outtwobdep}{} % 17
+\newcommand{\analysisthreetex}{} % 18
+\newcommand{\analysisthreeouts}{} % 19
+\newcommand{\outtwoa}{} % 20
+\newcommand{\outtwoadep}{} % 21
+\newcommand{\outthreeadep}{} % 22
@@ -96,7 +97,10 @@
%% paper.tex
\ifdefined\papertex
+ \node (reftex) [node-nonterminal, at={(2.67cm,-4.2cm)}] {references.tex};
\node (papertex) [node-nonterminal, at={(5.47cm,-4.2cm)}] {paper.tex};
+ \node (papertex-north) [node-point, at={(5.47cm,-3.58cm)}] {};
+ \draw [rounded corners] (reftex) |- (papertex-north);
\draw [->] (papertex) -- (paperpdf);
\fi
diff --git a/tex/src/figure-file-architecture.tex b/tex/src/figure-file-architecture.tex
index c892232..a4d4755 100644
--- a/tex/src/figure-file-architecture.tex
+++ b/tex/src/figure-file-architecture.tex
@@ -54,7 +54,7 @@
\fi
%% reproduce/software/bash
- \node [dirbox, at={(-5.75cm,-0.8cm)}, minimum width=2.6cm, minimum height=2.1cm,
+ \node [dirbox, at={(-5.75cm,-0.8cm)}, minimum width=2.6cm, minimum height=1.6cm,
label={[shift={(0,-5mm)}]\texttt{bash/}}, fill=brown!25!white] {};
\ifdefined\fullfilearchitecture
\node [node-nonterminal-thin, at={(-5.75cm,-1.5cm)}] {bashrc.sh};
@@ -75,32 +75,34 @@
label={[shift={(0,-5mm)}]\texttt{analysis/}}, fill=brown!20!white] {};
%% reproduce/analysis/config
- \node [dirbox, at={(0.15cm,1.5cm)}, minimum width=2.6cm, minimum height=2.1cm,
+ \node [dirbox, at={(0.15cm,1.5cm)}, minimum width=2.6cm, minimum height=2.6cm,
label={[shift={(0,-5mm)}]\texttt{config/}}, fill=brown!25!white] {};
\node [node-nonterminal-thin, at={(0.15cm,0.8cm)}] {INPUTS.conf};
\node [node-nonterminal-thin, at={(0.15cm,0.3cm)}] {param-1.conf};
- \node [node-nonterminal-thin, at={(0.15cm,-0.2cm)}] {param-2.conf};
+ \node [node-nonterminal-thin, at={(0.15cm,-0.2cm)}] {param-2a.conf};
+ \node [node-nonterminal-thin, at={(0.15cm,-0.7cm)}] {param-2b.conf};
%% reproduce/analysis/make
- \node [dirbox, at={(2.95cm,1.5cm)}, minimum width=2.6cm, minimum height=2.1cm,
+ \node [dirbox, at={(2.95cm,1.5cm)}, minimum width=2.6cm, minimum height=2.6cm,
label={[shift={(0,-5mm)}]\texttt{make/}}, fill=brown!25!white] {};
- \node [node-nonterminal-thin, at={(2.95cm,0.8cm)}] {initialize.mk};
- \node [node-nonterminal-thin, at={(2.95cm,0.3cm)}] {download.mk};
- \node [node-nonterminal-thin, at={(2.95cm,-0.2cm)}] {analysis-1.mk};
+ \node [node-nonterminal-thin, at={(2.95cm,0.8cm)}] {top-prepare.mk};
+ \node [node-nonterminal-thin, at={(2.95cm,0.3cm)}] {top-make.mk};
+ \node [node-nonterminal-thin, at={(2.95cm,-0.2cm)}] {initialize.mk};
+ \node [node-nonterminal-thin, at={(2.95cm,-0.7cm)}] {analysis1.mk};
%% reproduce/analysis/bash
- \node [dirbox, at={(0.15cm,-0.8cm)}, minimum width=2.6cm, minimum height=2.1cm,
+ \node [dirbox, at={(0.15cm,-1.3cm)}, minimum width=2.6cm, minimum height=1.1cm,
label={[shift={(0,-5mm)}]\texttt{bash/}}, fill=brown!25!white] {};
\ifdefined\fullfilearchitecture
- \node [node-nonterminal-thin, at={(0.15cm,-1.5cm)}] {process-A.sh};
+ \node [node-nonterminal-thin, at={(0.15cm,-2.0cm)}] {process-A.sh};
\fi
%% reproduce/analysis/python
- \node [dirbox, at={(2.95cm,-0.8cm)}, minimum width=2.6cm, minimum height=2.1cm,
+ \node [dirbox, at={(2.95cm,-1.3cm)}, minimum width=2.6cm, minimum height=1.6cm,
label={[shift={(0,-5mm)}]\texttt{python/}}, fill=brown!25!white] {};
\ifdefined\fullfilearchitecture
- \node [node-nonterminal-thin, at={(2.95cm,-1.5cm)}] {operation-B.py};
- \node [node-nonterminal-thin, at={(2.95cm,-2.0cm)}] {fitting-plot.py};
+ \node [node-nonterminal-thin, at={(2.95cm,-2.0cm)}] {operation-B.py};
+ \node [node-nonterminal-thin, at={(2.95cm,-2.5cm)}] {fitting-plot.py};
\fi
%% tex/
@@ -108,28 +110,28 @@
label={[shift={(0,-5mm)}]\texttt{tex/}}, fill=brown!15!white] {};
%% tex/src
- \node [dirbox, at={(6cm,2.1cm)}, minimum width=2.5cm, minimum height=2.1cm,
+ \node [dirbox, at={(6cm,2.1cm)}, minimum width=2.5cm, minimum height=1.6cm,
label={[shift={(0,-5mm)}]\texttt{src/}}, fill=brown!20!white] {};
+ \node [node-nonterminal-thin, at={(6cm,1.4cm)}] {references.tex};
\ifdefined\fullfilearchitecture
- \node [node-nonterminal-thin, at={(6cm,1.4cm)}] {preamble-1.tex};
\node [node-nonterminal-thin, at={(6cm,0.9cm)}] {figure-1.tex};
\fi
%% tex/build
\ifdefined\fullfilearchitecture
- \node [dirbox, at={(6cm,-0.2cm)}, minimum width=2.5cm, minimum height=1.3cm,
+ \node [dirbox, at={(6cm,0.1cm)}, minimum width=2.5cm, minimum height=1.3cm,
label={[shift={(0,-5mm)}]\texttt{build/}}, dashed, , fill=brown!20!white] {};
- \node [anchor=west, at={(4.7cm,-1.0cm)}] {\scriptsize\sf Symbolic link to};
- \node [anchor=west, at={(4.7cm,-1.3cm)}] {\scriptsize\sf \LaTeX{} build directory.};
+ \node [anchor=west, at={(4.7cm,-0.7cm)}] {\scriptsize\sf Symbolic link to};
+ \node [anchor=west, at={(4.7cm,-1.0cm)}] {\scriptsize\sf \LaTeX{} build directory.};
\fi
%% tex/tikz
\ifdefined\fullfilearchitecture
- \node [dirbox, at={(6cm,-1.7cm)}, minimum width=2.5cm, minimum height=1.6cm,
+ \node [dirbox, at={(6cm,-1.6cm)}, minimum width=2.5cm, minimum height=1.6cm,
label={[shift={(0,-5mm)}]\texttt{tikz/}}, dashed, fill=brown!20!white] {};
- \node [anchor=west, at={(4.67cm,-2.5cm)}] {\scriptsize\sf Symbolic link to TikZ};
- \node [anchor=west, at={(4.67cm,-2.8cm)}] {\scriptsize\sf directory (figures built};
- \node [anchor=west, at={(4.67cm,-3.1cm)}] {\scriptsize\sf by \LaTeX).};
+ \node [anchor=west, at={(4.67cm,-2.4cm)}] {\scriptsize\sf Symbolic link to TikZ};
+ \node [anchor=west, at={(4.67cm,-2.7cm)}] {\scriptsize\sf directory (figures built};
+ \node [anchor=west, at={(4.67cm,-3.0cm)}] {\scriptsize\sf by \LaTeX).};
\fi
%% .local
diff --git a/tex/src/preamble-style.tex b/tex/src/preamble-style.tex
index fe36eec..c3aeca2 100644
--- a/tex/src/preamble-style.tex
+++ b/tex/src/preamble-style.tex
@@ -136,4 +136,4 @@
}
%% Custom macros
-\newcommand{\inlinecode}[1]{`\textcolor{blue!35!black}{\texttt{#1}}'}
+\newcommand{\inlinecode}[1]{\textcolor{blue!35!black}{\texttt{#1}}}