diff options
Diffstat (limited to 'reproduce')
| -rw-r--r-- | reproduce/analysis/config/INPUTS.mk | 2 | ||||
| -rw-r--r-- | reproduce/analysis/make/analysis-1.mk (renamed from reproduce/analysis/make/menke2020.mk) | 10 | ||||
| -rw-r--r-- | reproduce/analysis/make/download.mk | 8 | ||||
| -rw-r--r-- | reproduce/analysis/make/top-make.mk | 2 | ||||
| -rw-r--r-- | reproduce/software/config/installation/texlive.mk | 3 |
5 files changed, 13 insertions, 12 deletions
diff --git a/reproduce/analysis/config/INPUTS.mk b/reproduce/analysis/config/INPUTS.mk index 9332df3..b1cf546 100644 --- a/reproduce/analysis/config/INPUTS.mk +++ b/reproduce/analysis/config/INPUTS.mk @@ -9,7 +9,7 @@ # this notice are preserved. This file is offered as-is, without any # warranty. -MK20DATA = menke-etal-2020.xlsx +MK20DATA = menke20.xlsx MK20MD5 = 8e4eee64791f351fec58680126d558a0 MK20SIZE = 1.9MB MK20URL = https://www.biorxiv.org/content/biorxiv/early/2020/01/18/2020.01.15.908111/DC1/embed/media-1.xlsx diff --git a/reproduce/analysis/make/menke2020.mk b/reproduce/analysis/make/analysis-1.mk index 4dd9897..9d0018e 100644 --- a/reproduce/analysis/make/menke2020.mk +++ b/reproduce/analysis/make/analysis-1.mk @@ -20,10 +20,10 @@ # Save the "Table 3" spreadsheet from the downloaded `.xlsx' file into a # simple plain-text file that is easy to use. -mk20dir = $(BDIR)/menke2020 -mk20tab3 = $(mk20dir)/table-3.txt -$(mk20dir):; mkdir $@ -$(mk20tab3): $(indir)/menke-etal-2020.xlsx | $(mk20dir) +a1dir = $(BDIR)/analysis-1 +mk20tab3 = $(a1dir)/menke20-table-3.txt +$(a1dir):; mkdir $@ +$(mk20tab3): $(indir)/menke20.xlsx | $(a1dir) # Set a base-name for the table-3 data. base=$(basename $(notdir $<))-table-3 @@ -62,7 +62,7 @@ $(mk20tab3): $(indir)/menke-etal-2020.xlsx | $(mk20dir) # Main LaTeX macro file -$(mtexdir)/menke2020.tex: $(mk20tab3) | $(mtexdir) +$(mtexdir)/analysis-1.tex: $(mk20tab3) | $(mtexdir) # Count the total number of papers in their study. v=$$(awk '!/^#/{c+=$$2} END{print c}' $(mk20tab3)) diff --git a/reproduce/analysis/make/download.mk b/reproduce/analysis/make/download.mk index 7e61cb8..e4f2ccd 100644 --- a/reproduce/analysis/make/download.mk +++ b/reproduce/analysis/make/download.mk @@ -49,11 +49,11 @@ # progress at every moment. $(indir):; mkdir $@ downloadwrapper = $(bashdir)/download-multi-try -inputdatasets = $(indir)/menke-etal-2020.xlsx +inputdatasets = $(indir)/menke20.xlsx $(inputdatasets): $(indir)/%: | $(indir) $(lockdir) # Set the necessary parameters for this input file. - if [ $* = menke-etal-2020.xlsx ]; then + if [ $* = menke20.xlsx ]; then origname=$(MK20DATA); fullurl=$(MK20URL); mdf=$(MK20MD5); else echo; echo; echo "Not recognized input dataset: '$*.fits'." @@ -93,5 +93,5 @@ $(inputdatasets): $(indir)/%: | $(indir) $(lockdir) # # It is very important to mention the address where the data were # downloaded in the final report. -$(mtexdir)/download.tex: $(pconfdir)/INPUTS.mk | $(mtexdir) - echo > $@ +$(mtexdir)/download.tex: $(indir)/menke20.xlsx | $(mtexdir) + echo "\newcommand{\menketwentyurl}{$(MK20URL)}" > $@ diff --git a/reproduce/analysis/make/top-make.mk b/reproduce/analysis/make/top-make.mk index 29bcd83..6dd322f 100644 --- a/reproduce/analysis/make/top-make.mk +++ b/reproduce/analysis/make/top-make.mk @@ -113,7 +113,7 @@ endif makesrc = initialize \ download \ verify \ - menke2020 \ + analysis-1 \ paper diff --git a/reproduce/software/config/installation/texlive.mk b/reproduce/software/config/installation/texlive.mk index c918748..6760eba 100644 --- a/reproduce/software/config/installation/texlive.mk +++ b/reproduce/software/config/installation/texlive.mk @@ -23,4 +23,5 @@ texlive-packages = tex fancyhdr ec newtx fontaxes xkeyval etoolbox xcolor \ trimspaces pdftexcmds pdfescape letltxmacro bitset \ mweights \ \ - alegreya enumitem fontspec lastpage listings + alegreya enumitem fontspec lastpage listings environ \ + tcolorbox |