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-rw-r--r--reproduce/src/make/dependencies-python.mk24
-rw-r--r--reproduce/src/make/dependencies.mk32
2 files changed, 46 insertions, 10 deletions
diff --git a/reproduce/src/make/dependencies-python.mk b/reproduce/src/make/dependencies-python.mk
index c7f861b..642316c 100644
--- a/reproduce/src/make/dependencies-python.mk
+++ b/reproduce/src/make/dependencies-python.mk
@@ -43,10 +43,7 @@ ilidir = $(BDIR)/dependencies/installed/lib/built
ipydir = $(BDIR)/dependencies/installed/lib/built/python
# Define the top-level programs to build (installed in `.local/bin').
-ifneq ($(on_mac_os),yes)
-withscipy=scipy
-endif
-top-level-python = astroquery matplotlib $(withscipy)
+top-level-python = astroquery matplotlib
all: $(foreach p, $(top-level-python), $(ipydir)/$(p))
# Other basic environment settings: We are only including the host
@@ -328,7 +325,8 @@ $(ipydir)/astroquery: $(tdir)/astroquery-$(astroquery-version).tar.gz \
$(ipydir)/astropy: $(tdir)/astropy-$(astropy-version).tar.gz \
$(ipydir)/h5py \
- $(ipydir)/numpy
+ $(ipydir)/numpy \
+ $(ipydir)/scipy
$(call pybuild, tar xf, $<, astropy-$(astropy-version))
$(ipydir)/beautifulsoup4: $(tdir)/beautifulsoup4-$(beautifulsoup4-version).tar.gz \
@@ -398,8 +396,14 @@ $(ipydir)/matplotlib: $(tdir)/matplotlib-$(matplotlib-version).tar.gz \
$(call pybuild, tar xf, $<, matplotlib-$(matplotlib-version))
$(ipydir)/numpy: $(tdir)/numpy-$(numpy-version).zip \
- $(ipydir)/setuptools
- export LDFLAGS="$$LDFLAGS -shared"; \
+ $(ipydir)/setuptools \
+ $(ilidir)/openblas \
+ $(ilidir)/fftw
+ if [ x$(on_mac_os) = xyes ]; then \
+ export LDFLAGS="$(LDFLAGS) -undefined dynamic_lookup -bundle"; \
+ else \
+ export LDFLAGS="$(LDFLAGS) -shared"; \
+ fi; \
conf="$$(pwd)/reproduce/config/pipeline/dependency-numpy-scipy.cfg"; \
$(call pybuild, unzip, $<, numpy-$(numpy-version),$$conf)
@@ -430,7 +434,11 @@ $(ipydir)/requests: $(tdir)/requests-$(requests-version).tar.gz \
$(ipydir)/scipy: $(tdir)/scipy-$(scipy-version).tar.gz \
$(ipydir)/numpy
- export LDFLAGS="$$LDFLAGS -shared"; \
+ if [ x$(on_mac_os) = xyes ]; then \
+ export LDFLAGS="$(LDFLAGS) -undefined dynamic_lookup -bundle"; \
+ else \
+ export LDFLAGS="$(LDFLAGS) -shared"; \
+ fi; \
conf="$$(pwd)/reproduce/config/pipeline/dependency-numpy-scipy.cfg"; \
$(call pybuild, tar xf, $<, scipy-$(scipy-version),$$conf)
diff --git a/reproduce/src/make/dependencies.mk b/reproduce/src/make/dependencies.mk
index 9953311..ee95be9 100644
--- a/reproduce/src/make/dependencies.mk
+++ b/reproduce/src/make/dependencies.mk
@@ -43,8 +43,13 @@ ildir = $(BDIR)/dependencies/installed/lib
ilidir = $(BDIR)/dependencies/installed/lib/built
# Define the top-level programs to build (installed in `.local/bin').
+#
+# About ATLAS: currently the core pipeline does not depend on ATLAS but many
+# high level software depend on it. The current rule for ATLAS is tested
+# successfully on Mac (only static) and GNU/Linux (shared and static). But,
+# since it takes a few hours to build, it is not currently a target.
top-level-programs = astnoisechisel flock metastore unzip zip
-top-level-libraries = freetype atlas
+top-level-libraries = freetype openblas fftw # atlas
all: $(ddir)/texlive-versions.tex \
$(foreach p, $(top-level-programs), $(ibdir)/$(p)) \
$(foreach p, $(top-level-libraries), $(ilidir)/$(p))
@@ -95,6 +100,7 @@ tarballs = $(foreach t, cfitsio-$(cfitsio-version).tar.gz \
curl-$(curl-version).tar.gz \
flock-$(flock-version).tar.xz \
freetype-$(freetype-version).tar.gz \
+ fftw-$(fftw-version).tar.gz \
ghostscript-$(ghostscript-version).tar.gz \
git-$(git-version).tar.xz \
gnuastro-$(gnuastro-version).tar.lz \
@@ -108,6 +114,7 @@ tarballs = $(foreach t, cfitsio-$(cfitsio-version).tar.gz \
libgit2-$(libgit2-version).tar.gz \
metastore-$(metastore-version).tar.gz \
unzip-$(unzip-version).tar.gz \
+ openblas-$(openblas-version).tar.gz \
tiff-$(libtiff-version).tar.gz \
wcslib-$(wcslib-version).tar.bz2 \
zip-$(zip-version).tar.gz \
@@ -138,6 +145,7 @@ $(tarballs): $(tdir)/%:
elif [ $$n = cmake ]; then w=https://cmake.org/files/v3.12
elif [ $$n = curl ]; then w=https://curl.haxx.se/download
elif [ $$n = flock ]; then w=https://github.com/discoteq/flock/releases/download/v$(flock-version)
+ elif [ $$n = fftw ]; then w=ftp://ftp.fftw.org/pub/fftw
elif [ $$n = freetype ]; then w=https://download.savannah.gnu.org/releases/freetype
elif [ $$n = ghostscript ]; then w=https://github.com/ArtifexSoftware/ghostpdl-downloads/releases/download/gs926
elif [ $$n = git ]; then w=http://mirrors.edge.kernel.org/pub/software/scm/git
@@ -153,6 +161,9 @@ $(tarballs): $(tdir)/%:
mergenames=0
w=https://github.com/libgit2/libgit2/archive/v$(libgit2-version).tar.gz
elif [ $$n = metastore ]; then w=http://akhlaghi.org/src
+ elif [ $$n = openblas ]; then
+ mergenames=0
+ w=https://github.com/xianyi/OpenBLAS/archive/v$(openblas-version).tar.gz
elif [ $$n = tiff ]; then w=https://download.osgeo.org/libtiff
elif [ $$n = unzip ]; then w=ftp://ftp.info-zip.org/pub/infozip/src
mergenames=0; v=$$(echo $(unzip-version) | sed -e's/\.//')
@@ -234,6 +245,11 @@ $(ilidir)/gsl: $(tdir)/gsl-$(gsl-version).tar.gz
$(call gbuild, $<, gsl-$(gsl-version), static) \
&& echo "GNU Scientific Library is built" > $@
+$(ilidir)/fftw: $(tdir)/fftw-$(fftw-version).tar.gz
+ $(call gbuild, $<, fftw-$(fftw-version), static, \
+ --enable-shared) \
+ && echo "FFTW is built" > $@
+
# Freetype is necessary to install matplotlib
$(ilidir)/freetype: $(tdir)/freetype-$(freetype-version).tar.gz \
$(ilidir)/libpng
@@ -303,7 +319,7 @@ $(ilidir)/atlas: $(tdir)/atlas-$(atlas-version).tar.bz2 \
&& rm -rf build \
&& mkdir build \
&& cd build \
- && echo ../configure -b 64 -D c -DPentiumCPS=$$core \
+ && ../configure -b 64 -D c -DPentiumCPS=$$core \
--with-netlib-lapack-tarfile=$(word 2, $^) \
--cripple-atlas-performance \
-Fa alg -fPIC --shared $$clangflag \
@@ -335,6 +351,18 @@ $(ilidir)/atlas: $(tdir)/atlas-$(atlas-version).tar.bz2 \
# currently building shared library on Mac.
if [ -f $(ildir)/libatlas.a ]; then echo "Atlas is built" > $@; fi
+$(ilidir)/openblas: $(tdir)/openblas-$(openblas-version).tar.gz
+ if [ x$(on_mac_os) = xyes ]; then \
+ export CC=clang \
+ fi; \
+ cd $(ddir) \
+ && tar xf $< \
+ && cd OpenBLAS-$(openblas-version) \
+ && make \
+ && make PREFIX=$(idir) install \
+ && cd .. \
+ && rm -rf OpenBLAS-$(openblas-version) \
+ && echo "Libtiff is built" > $@