diff options
Diffstat (limited to 'reproduce/software/config')
| -rw-r--r-- | reproduce/software/config/LOCAL.conf.in | 4 | ||||
| -rw-r--r-- | reproduce/software/config/TARGETS.conf | 18 | ||||
| -rw-r--r-- | reproduce/software/config/checksums.conf | 316 | ||||
| -rw-r--r-- | reproduce/software/config/numpy-scipy.cfg | 6 | ||||
| -rw-r--r-- | reproduce/software/config/servers-backup.conf | 2 | ||||
| -rwxr-xr-x | reproduce/software/config/software_acknowledge_context.sh | 4 | ||||
| -rw-r--r-- | reproduce/software/config/texlive-packages.conf | 10 | ||||
| -rw-r--r-- | reproduce/software/config/texlive.conf | 2 | ||||
| -rw-r--r-- | reproduce/software/config/urls.conf | 55 | ||||
| -rw-r--r-- | reproduce/software/config/versions.conf | 307 |
10 files changed, 441 insertions, 283 deletions
diff --git a/reproduce/software/config/LOCAL.conf.in b/reproduce/software/config/LOCAL.conf.in index 132c3f7..a7434ea 100644 --- a/reproduce/software/config/LOCAL.conf.in +++ b/reproduce/software/config/LOCAL.conf.in @@ -1,9 +1,9 @@ # Local project configuration. # -# This is just a template for the `./project configure' script to fill +# This is just a template for the './project configure' script to fill # in. Please don't make any change to this file. # -# Copyright (C) 2018-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org> +# Copyright (C) 2018-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # Copying and distribution of this file, with or without modification, are # permitted in any medium without royalty provided the copyright notice and diff --git a/reproduce/software/config/TARGETS.conf b/reproduce/software/config/TARGETS.conf index 95f12f2..94c7e5f 100644 --- a/reproduce/software/config/TARGETS.conf +++ b/reproduce/software/config/TARGETS.conf @@ -1,7 +1,7 @@ # Necessary high-level software to build in this project. # -# Copyright (C) 2018-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org> -# Copyright (C) 2019-2021 Raul Infante-Sainz <infantesainz@gmail.com> +# Copyright (C) 2018-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org> +# Copyright (C) 2019-2022 Raul Infante-Sainz <infantesainz@gmail.com> # # Copying and distribution of this file, with or without modification, are # permitted in any medium without royalty provided the copyright notice and @@ -21,25 +21,29 @@ # reproduce/software/config/versions.conf # # Please add any software that you need for your project in the respective -# part below (using its name in `versions.conf', but without the `-version' +# part below (using its name in 'versions.conf', but without the '-version' # part). Just note that if a program/library is a dependency of another, # you don't need to include it here (it will be installed before the # higher-level software anyway). # # Note that many low-level software will be installed before those that are # installed in this step. They are clearly distinguished from the -# higher-level (optional) software in `versions.conf'. These low-level +# higher-level (optional) software in 'versions.conf'. These low-level # software MUST NOT be added here. -# Programs and libraries. +# Programs and libraries (for Python or R modules, use respective variable). # # Ghostscript: to build PDF paper (in particular the `ps2pdf' command). # XLSXI/O: to read and write XLSX files. -top-level-programs = ghostscript xlsxio +top-level-programs = ghostscript xlsxio # Python libraries/modules. -top-level-python = +top-level-python = + +# R libraries/modules +# [For developers 2022-01-02: 'r-cran-cowplot r-cran-gridExtra' for all] +top-level-r-cran = diff --git a/reproduce/software/config/checksums.conf b/reproduce/software/config/checksums.conf index 0e21912..7450e6d 100644 --- a/reproduce/software/config/checksums.conf +++ b/reproduce/software/config/checksums.conf @@ -1,7 +1,8 @@ # sha512 checksums of all the necessary software tarballs. # -# Copyright (C) 2018-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org> -# Copyright (C) 2019-2021 Raul Infante-Sainz <infantesainz@gmail.com> +# Copyright (C) 2018-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org> +# Copyright (C) 2019-2022 Raul Infante-Sainz <infantesainz@gmail.com> +# Copyright (C) 2022 Pedram Ashofteh Ardakani <pedramardakani@pm.me> # # Copying and distribution of this file, with or without modification, are # permitted in any medium without royalty provided the copyright notice and @@ -14,54 +15,53 @@ # Basic/low-level programs and libraires (installed in any case) # -------------------------------------------------------------- -bash-checksum = e210cd63ce1241636fbb14d1a105c83e9481a0312026f746f76f7115b777707170ddfe1840fb4d3a4093613048e2d1eedf926e843ad15ffc8d66f08525e8b04b -binutils-checksum = 5ad795fab0803be83b53aa955fd5414c8408b4cf2a66eba2f8688298312934b4b1b0cbe9cf887d86de77f88adf1333d85fc9f6ab4a530e85a09b9b2dbf6aaf3f -bzip2-checksum = 00ace5438cfa0c577e5f578d8a808613187eff5217c35164ffe044fbafdfec9e98f4192c02a7d67e01e5a5ccced630583ad1003c37697219b0f147343a3fdd12 -cert-checksum = 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project. To specify a software there, just remove the `-checksum' suffix +# 'reproduce/software/config/TARGETS.conf' will be built as part of a +# project. 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hash strings for the R modules/libraries below should +# correspond to the version numbers in +# 'reproduce/software/conf/versions.conf'. 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97877fa1ec21244285366818ad51dbe9c5086b377c1217d4ffc250a1f83cd142cc28d35f9aac0527f26bb2e3f0b399537b386a27de2fe546c301029f59614f65 diff --git a/reproduce/software/config/numpy-scipy.cfg b/reproduce/software/config/numpy-scipy.cfg index 3a3171e..09c1627 100644 --- a/reproduce/software/config/numpy-scipy.cfg +++ b/reproduce/software/config/numpy-scipy.cfg @@ -7,8 +7,8 @@ # appropriate sections. Not all packages will use all sections so you # should leave out sections that your package does not use. # -# Copyright (C) 2018-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org> -# Copyright (C) 2019-2021 Raul Infante-Sainz <infantesainz@gmail.com> +# Copyright (C) 2018-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org> +# Copyright (C) 2019-2022 Raul Infante-Sainz <infantesainz@gmail.com> # # Copying and distribution of this file, with or without modification, are # permitted in any medium without royalty provided the copyright notice and @@ -18,7 +18,7 @@ # IMPORTANT NOTE # -------------- # -# The `ALL' grouping does't apply to ATLAS!!!!! +# The 'ALL' grouping does't apply to ATLAS!!!!! [ALL] library_dirs = @LIBDIR@ diff --git a/reproduce/software/config/servers-backup.conf b/reproduce/software/config/servers-backup.conf index 8db0ce1..64de818 100644 --- a/reproduce/software/config/servers-backup.conf +++ b/reproduce/software/config/servers-backup.conf @@ -3,7 +3,7 @@ # is irrelevant). Note that this is not a to be read as a variable but will # be parsed as a list. # -# Copyright (C) 2020-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org> +# Copyright (C) 2020-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # Copying and distribution of this file, with or without modification, are # permitted in any medium without royalty provided the copyright notice and diff --git a/reproduce/software/config/software_acknowledge_context.sh b/reproduce/software/config/software_acknowledge_context.sh index 788ab94..f719d5e 100755 --- a/reproduce/software/config/software_acknowledge_context.sh +++ b/reproduce/software/config/software_acknowledge_context.sh @@ -10,8 +10,8 @@ # your project to make a smoothly readable English text. Afterwards, please # feel free to modify them as you wish. # -# Copyright (C) 2020-2021 Boud Roukema <boud@cosmo.torun.pl> -# Copyright (C) 2020-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org> +# Copyright (C) 2020-2022 Boud Roukema <boud@cosmo.torun.pl> +# Copyright (C) 2020-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # This script is free software: you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by the diff --git a/reproduce/software/config/texlive-packages.conf b/reproduce/software/config/texlive-packages.conf index d4900f1..05dd0e2 100644 --- a/reproduce/software/config/texlive-packages.conf +++ b/reproduce/software/config/texlive-packages.conf @@ -1,10 +1,10 @@ # Necessary packages to install in TeX Live. # # If any extra TeX package is necessary to build your paper, just add its -# name to this variable (you can check in `ctan.org' to find the official +# name to this variable (you can check in 'ctan.org' to find the official # name). # -# Copyright (C) 2018-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org> +# Copyright (C) 2018-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # Copying and distribution of this file, with or without modification, are # permitted in any medium without royalty provided the copyright notice and @@ -12,11 +12,11 @@ # warranty. -# Note on `tex' and `fancyhdr': These two packages are installed along with +# Note on 'tex' and 'fancyhdr': These two packages are installed along with # the basic installation scheme that we used to install tlmgr, they will be -# ignored in the `tlmgr install' command, but will be used later when we +# ignored in the 'tlmgr install' command, but will be used later when we # want their versions. texlive-typewriter-pkgs = courier inconsolata xkeyval upquote -texlive-packages = times IEEEtran cite xcolor pgfplots ps2eps \ +texlive-packages = times ieeetran cite xcolor pgfplots ps2eps \ listings ulem etoolbox multibib \ $(texlive-typewriter-pkgs) diff --git a/reproduce/software/config/texlive.conf b/reproduce/software/config/texlive.conf index 94a4c89..950dd4f 100644 --- a/reproduce/software/config/texlive.conf +++ b/reproduce/software/config/texlive.conf @@ -2,7 +2,7 @@ # # installdir: Install directory # -# Copyright (C) 2018-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org> +# Copyright (C) 2018-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # Copying and distribution of this file, with or without modification, are # permitted in any medium without royalty provided the copyright notice and diff --git a/reproduce/software/config/urls.conf b/reproduce/software/config/urls.conf index a311524..7177411 100644 --- a/reproduce/software/config/urls.conf +++ b/reproduce/software/config/urls.conf @@ -3,8 +3,8 @@ # If un-commented the URLs of this file will be used. Otherwise default # servers (primarily on 'zenodo.org') will be checked for the tarball. # -# Copyright (C) 2020-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org> -# Copyright (C) 2020-2021 Raul Infante-Sainz <infantesainz@gmail.com> +# Copyright (C) 2020-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org> +# Copyright (C) 2020-2022 Raul Infante-Sainz <infantesainz@gmail.com> # # Copying and distribution of this file, with or without modification, are # permitted in any medium without royalty provided the copyright notice and @@ -19,15 +19,15 @@ # ------------------------------------------------------------- #bash-url = http://akhlaghi.org/src #binutils-url = http://ftp.gnu.org/gnu/binutils -#bzip2-url = http://akhlaghi.org/maneage-software +#bzip2-url = https://sourceware.org/pub/bzip2 #cert-url = http://akhlaghi.org/maneage-software #coreutils-url = http://ftp.gnu.org/gnu/coreutils #curl-url = https://curl.haxx.se/download -#dash-url = http://akhlaghi.org/maneage-software +#dash-url = http://gondor.apana.org.au/~herbert/dash/files #diffutils-url = http://ftp.gnu.org/gnu/diffutils #file-url = ftp://ftp.astron.com/pub/file #findutils-url = http://ftp.gnu.org/gnu/findutils -#flock-url = http://akhlaghi.org/src +#flock-url = https://github.com/discoteq/flock/releases #gawk-url = http://ftp.gnu.org/gnu/gawk #gcc-url = http://ftp.gnu.org/gnu/gcc/gcc-$(gcc-version) #gettext-url = https://ftp.gnu.org/gnu/gettext @@ -36,8 +36,7 @@ #grep-url = http://ftp.gnu.org/gnu/grep #gzip-url = http://akhlaghi.org/src #isl-url = ftp://gcc.gnu.org/pub/gcc/infrastructure -less-url = http://www.greenwoodsoftware.com/less/ -#libbsd-url = http://libbsd.freedesktop.org/releases +#less-url = http://www.greenwoodsoftware.com/less/ #libiconv-url = https://ftp.gnu.org/pub/gnu/libiconv #libtool-url = http://ftp.gnu.org/gnu/libtool #libunistring-url = http://ftp.gnu.org/gnu/libunistring @@ -45,15 +44,15 @@ less-url = http://www.greenwoodsoftware.com/less/ #lzip-url = http://akhlaghi.org/src #m4-url = http://akhlaghi.org/maneage-software #make-url = http://akhlaghi.org/src -#metastore-url = http://akhlaghi.org/maneage-software #mpc-url = http://ftp.gnu.org/gnu/mpc #mpfr-url = http://www.mpfr.org/mpfr-current #nano-url = https://www.nano-editor.org/dist/v$(word 1, $(subst ., ,$(nano-version))) #ncurses-url = http://ftp.gnu.org/gnu/ncurses #openssl-url = http://www.openssl.org/source -#patchelf-url = http://nixos.org/releases/patchelf/patchelf-$(patchelf-version) +#patchelf-url = https://github.com/NixOS/patchelf/releases/download/$(patchelf-version) #perl-url = $(shell echo https://www.cpan.org/src/$$(echo $(perl-version) | sed -e's/\./ /g' | awk '{printf("%d.0", $$1)}')) #pkgconfig-url = http://pkg-config.freedesktop.org/releases +#podlators-url = https://www.eyrie.org/~eagle/software/podlators/ #readline-url = http://ftp.gnu.org/gnu/readline #sed-url = http://ftp.gnu.org/gnu/sed #tar-url = http://ftp.gnu.org/gnu/tar @@ -73,30 +72,31 @@ less-url = http://www.greenwoodsoftware.com/less/ # ------------------------------------------ # # These are programs and libraries that are optional, The ones in -# `reproduce/software/config/TARGETS.conf' will be built as +# 'reproduce/software/config/TARGETS.conf' will be built as # part of a project. To specify a software there, just remove the -# `-url' suffix from the list below. +# '-url' suffix from the list below. + #apachelog4cxx-url = http://akhlaghi.org/maneage-software -#apr-url = https://www-us.apache.org/dist/apr -#apr-util-url = https://www-us.apache.org/dist/apr +#apr-url = https://archive.apache.org/dist/apr/ +#apr-util-url = https://archive.apache.org/dist/apr/ #astrometrynet-url = http://astrometry.net/downloads #atlas-url = https://sourceforge.net/projects/math-atlas/files/Stable/$(atlas-version)/atlas$(atlas-version).tar.bz2/download #autoconf-url = http://akhlaghi.org/maneage-software #automake-url = http://ftp.gnu.org/gnu/automake #bison-url = http://ftp.gnu.org/gnu/bison -#boost-url = $(shell vstr=$$(echo $(boost-version) | sed -e's/\./_/g'); echo https://dl.bintray.com/boostorg/release/$(boost-version)/source) +#boost-url = https://www.boost.org/users/download/ #cairo-url = https://www.cairographics.org/releases #cdsclient-url = http://cdsarc.u-strasbg.fr/ftp/pub/sw #cfitsio-url = https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c #cmake-url = $(shell majv=$$(echo $(cmake-version) | sed -e's/\./ /' | awk '{printf("%d.%d", $$1, $$2)}'); echo https://cmake.org/files/v$$majv) -#eigen-url = http://bitbucket.org/eigen/eigen/get/$(eigen-version).tar.gz +#eigen-url = https://eigen.tuxfamily.org #emacs-url = http://ftp.gnu.org/gnu/emacs -#expat-url = $(shell vstr=$$(echo $(expat-version) | sed -e's/\./_/g'); echo https://github.com/libexpat/libexpat/releases/download/R_$$vstr/expat-$(expat-version).tar.lz) -#fftw-url = ftp://ftp.fftw.org/pub/fftw +#expat-url = https://github.com/libexpat/libexpat/releases +#fftw-url = https://fftw.org #flex-url = https://github.com/westes/flex/files/981163 #freetype-url = https://download.savannah.gnu.org/releases/freetype #gdb-url = http://ftp.gnu.org/gnu/gdb -#ghostscript-url = $(shell v=$$(echo $(ghostscript-version) | sed -e's/\.//'); echo https://github.com/ArtifexSoftware/ghostpdl-downloads/releases/download/gs$$v) +#ghostscript-url = https://www.ghostscript.com/releases/gsdnld.html #gnuastro-url = http://ftp.gnu.org/gnu/gnuastro #gperf-url = http://ftp.gnu.org/pub/gnu/gperf #gs-fonts-gnu-url = https://downloads.sourceforge.net/gs-fonts @@ -105,28 +105,33 @@ less-url = http://www.greenwoodsoftware.com/less/ #hdf5-url = $(shell majorver=$$(echo $(hdf5-version) | sed -e 's/\./ /g' | awk '{printf("%d.%d", $$1, $$2)}'); echo https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$$majorver/hdf5-$(hdf5-version)/src) #healpix-url = http://akhlaghi.org/maneage-software #help2man-url = http://ftp.gnu.org/gnu/help2man -#ibpaper-url=http://ftp.debian.org/debian/pool/main/libp/libpaper/ -#imagemagick-url = http://akhlaghi.org/maneage-software +#libpaper-url = http://ftp.debian.org/debian/pool/main/libp/libpaper/ +#icu-url = https://github.com/unicode-org/icu/releases +#imagemagick-url = https://download.imagemagick.org/ImageMagick/download #imfit-url = http://www.mpe.mpg.de/~erwin/resources/imfit #lapack-url = http://www.netlib.org/lapack -#libffi-url = ftp://sourceware.org/pub/libffi +#libbsd-url = http://libbsd.freedesktop.org/releases +#libffi-url = https://sourceware.org/libffi/ #libgit2-url = http://akhlaghi.org/src #libidn-url = https://ftp.gnu.org/gnu/libidn #libjpeg-url = http://ijg.org/files +#libmd-url = https://archive.hadrons.org/software/libmd/ #libnsl-url = http://akhlaghi.org/maneage-software +#libpaper-url=http://ftp.debian.org/debian/pool/main/libp/libpaper/ #libpng-url = https://download.sourceforge.net/libpng #libtiff-url = https://download.osgeo.org/libtiff #libtirpc-url = https://downloads.sourceforge.net/libtirpc +#metastore-url = http://akhlaghi.org/maneage-software #minizip-url = #missfits-url = https://www.astromatic.net/download/missfits -#netpbm-url = http://akhlaghi.org/maneage-software +#netpbm-url = https://sourceforge.net/projects/netpbm/files/super_stable/ #openblas-url = https://github.com/xianyi/OpenBLAS/archive #openmpi-url = $(shell majorver=$$(echo $(openmpi-version) | sed -e 's/\./ /g' | awk '{printf("%d.%d", $$1, $$2)}'); echo https://download.open-mpi.org/release/open-mpi/v$$majorver) #openssh-url = https://artfiles.org/openbsd/OpenSSH/portable #patch-url = http://ftp.gnu.org/gnu/patch #pixman-url = https://www.cairographics.org/releases -#python-url = http://akhlaghi.org/src -#R-url = $(shell majver=$$(echo $(R-version) | sed -e's/\./ /g' | awk '{print $$1}'); echo https://cran.r-project.org/src/base/R-$$majver) +#python-url = https://www.python.org/downloads/ +#r-cran-url = $(shell majver=$$(echo $(r-cran-version) | sed -e's/\./ /g' | awk '{print $$1}'); echo https://cran.r-project.org/src/base/R-$$majver) #rpcsvc-proto-url = https://github.com/thkukuk/rpcsvc-proto/releases/download #scamp-url = http://akhlaghi.org/maneage-software #scons-url = https://sourceforge.net/projects/scons/files/scons/$(scons-version)/scons-$(scons-version).tar.gz/download @@ -149,8 +154,10 @@ less-url = http://www.greenwoodsoftware.com/less/ #libxau-url = https://www.x.org/pub/individual/lib #libxdmcp-url = https://www.x.org/pub/individual/lib #libxext-url = https://www.x.org/pub/individual/lib +#libice-url = https://www.x.org/archive/individual/lib/ #util-macros-url = https://www.x.org/pub/individual/util #xcb-proto-url = https://xorg.freedesktop.org/archive/individual/proto +#libxcb-url = https://xcb.freedesktop.org/dist/ #xorgproto-url = https://xorg.freedesktop.org/archive/individual/proto #xtrans-url = https://www.x.org/pub/individual/lib diff --git a/reproduce/software/config/versions.conf b/reproduce/software/config/versions.conf index 102ebbd..34d074c 100644 --- a/reproduce/software/config/versions.conf +++ b/reproduce/software/config/versions.conf @@ -1,7 +1,8 @@ # Versions of the various dependencies # -# Copyright (C) 2018-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org> -# Copyright (C) 2019-2021 Raul Infante-Sainz <infantesainz@gmail.com> +# Copyright (C) 2018-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org> +# Copyright (C) 2019-2022 Raul Infante-Sainz <infantesainz@gmail.com> +# Copyright (C) 2022 Pedram Ashofteh Ardakani <pedramardakani@pm.me> # # Copying and distribution of this file, with or without modification, are # permitted in any medium without royalty provided the copyright notice and @@ -15,47 +16,47 @@ # Basic/low-level programs and libraires (installed in any case) # -------------------------------------------------------------- # -# CLASS:BASIC (important identifier, don't modify this line) -bash-version = 5.0.18 -binutils-version = 2.35 -coreutils-version = 8.32 -curl-version = 7.71.1 -dash-version = 0.5.10.2 -diffutils-version = 3.7 -file-version = 5.39 -findutils-version = 4.7.0 -flock-version = 0.2.3 +# CLASS:BASIC (important identifier for 'awk'; don't modify this line) +bash-version = 5.1.8 +binutils-version = 2.37 +coreutils-version = 9.1 +curl-version = 7.79.1 +dash-version = 0.5.11.5 +diffutils-version = 3.8 +file-version = 5.41 +findutils-version = 4.8.0 +flock-version = 0.4.0 gawk-version = 5.1.0 -gcc-version = 10.2.0 +gcc-version = 11.2.0 gettext-version = 0.21 -git-version = 2.28.0 -gmp-version = 6.2.0 -grep-version = 3.4 -gzip-version = 1.10 +git-version = 2.36.0 +gmp-version = 6.2.1 +grep-version = 3.7 +gzip-version = 1.11 isl-version = 0.18 -less-version = 563 -libbsd-version = 0.10.0 +less-version = 590 libiconv-version = 1.16 libtool-version = 2.4.6 -libunistring-version = 0.9.10 -libxml2-version = 2.9.9 -lzip-version = 1.22-rc2 -m4-version = 1.4.18-patched +libunistring-version = 1.0 +libxml2-version = 2.9.12 +lzip-version = 1.22 +m4-version = 1.4.19 make-version = 4.3 -metastore-version = 1.1.2-23-fa9170b -mpc-version = 1.1.0 -mpfr-version = 4.0.2 -nano-version = 5.2 -ncurses-version = 6.2 -patchelf-version = 0.10 -perl-version = 5.32.0 +mpc-version = 1.2.1 +mpfr-version = 4.1.0 +nano-version = 6.0 +ncurses-version = 6.3 +openssl-version = 3.0.0 +patchelf-version = 0.13 +perl-version = 5.34.0 pkgconfig-version = 0.29.2 -readline-version = 8.0 +podlators-version = 4.14 +readline-version = 8.1.1 sed-version = 4.8 -tar-version = 1.32 -texinfo-version = 6.7 +tar-version = 1.34 +texinfo-version = 6.8 unzip-version = 6.0 -wget-version = 1.20.3 +wget-version = 1.21.2 which-version = 2.21 xz-version = 5.2.5 zip-version = 3.0 @@ -67,7 +68,16 @@ zlib-version = 1.2.11 # When updating the version of these programs/libraries, please look into # the build rule first: In one way or another, the version string becomes # necessary during their build and must be accounted for. -bzip2-version = 1.0.6 +bzip2-version = 1.0.8 + +# PEM Certificate File +# -------------------- +# +# This file should be shipped with operating systems and can be found in +# '/etc/ssl/cert.pem' (which may be a symbolic link to its actual +# location). The current version was taken from an up-to-date ArchLinux at +# the date that is also equal to the version. +certpem-version = 2021-10-15 @@ -77,108 +87,104 @@ bzip2-version = 1.0.6 # ------------------------------------------ # # These are programs and libraries that are optional, The ones in -# `reproduce/software/config/TARGETS.conf' will be built as +# 'reproduce/software/config/TARGETS.conf' will be built as # part of a project. To specify a software there, just remove the -# `-version' suffix from the list below. +# '-version' suffix from the list below. # -# CLASS:HIGHLEVEL (important identifier, don't modify this line.) -apachelog4cxx-version = 0.10.0-603-014954db +# CLASS:HIGHLEVEL (important identifier for 'awk'; don't modify this line) +apachelog4cxx-version = 0.12.1 apr-version = 1.7.0 apr-util-version = 1.6.1 -astrometrynet-version = 0.80 +astrometrynet-version = 0.85 atlas-version = 3.10.3 -autoconf-version = 2.69.200-babc -automake-version = 1.16.2 -bison-version = 3.7 -boost-version = 1.73.0 +autoconf-version = 2.71 +automake-version = 1.16.5 +bison-version = 3.8.2 +boost-version = 1.77.0 cairo-version = 1.16.0 cdsclient-version = 3.84 -cfitsio-version = 3.48 -cmake-version = 3.18.1 -eigen-version = 3.3.7 -emacs-version = 27.1 -expat-version = 2.2.9 -fftw-version = 3.3.8 -flex-version = 2.6.4-91-ga631f5d -freetype-version = 2.10.2 -gdb-version = 9.2 -ghostscript-version = 9.52 +cfitsio-version = 4.0.0 +cmake-version = 3.21.4 +eigen-version = 3.4.0 +emacs-version = 28.1 +expat-version = 2.4.1 +fftw-version = 3.3.10 +flex-version = 2.6.4 +freetype-version = 2.11.0 +gdb-version = 11.1 +ghostscript-version = 9.55.0 ghostscript-fonts-gnu-version = 6.0 ghostscript-fonts-std-version = 8.11 -gnuastro-version = 0.12 +gnuastro-version = 0.16.1-e0f1 gperf-version = 3.1 -gsl-version = 2.6 -healpix-version = 3.50 -help2man-version = 1.47.11 -imagemagick-version = 7.0.8-67 +gsl-version = 2.7 +help2man-version = 1.48.5 +icu-version = 70.1 +imagemagick-version = 7.1.0-13 imfit-version = 1.6.1 -libffi-version = 3.2.1 -libidn-version = 1.36 -libjpeg-version = v9b +libbsd-version = 0.11.3 +libffi-version = 3.4.2 +libidn-version = 1.38 +libjpeg-version = 9d +libmd-version = 1.0.4 libnsl-version = 1.2.0-4a062cf libpaper-version = 1.1.28 libpng-version = 1.6.37 -libtiff-version = 4.0.10 +libtiff-version = 4.3.0 libtirpc-version = 1.2.6 +metastore-version = 1.1.2-23-fa9170b missfits-version = 2.8.0 -openblas-version = 0.3.10 -openmpi-version = 4.0.4 +openblas-version = 0.3.18 +openmpi-version = 4.1.1 openssh-version = 8.0p1 patch-version = 2.7.6 pcre-version = 8.44 -pixman-version = 0.38.0 -python-version = 3.8.5 -R-version = 4.0.2 +pixman-version = 0.40.0 +python-version = 3.10.0 +r-cran-version = 4.1.2 rpcsvc-proto-version = 1.4 scamp-version = 2.6.7 scons-version = 3.0.5 sextractor-version = 2.25.0 swarp-version = 2.38.0 -swig-version = 3.0.12 +swig-version = 4.0.2 tides-version = 2.0 -util-linux-version = 2.35 +util-linux-version = 2.37.2 +valgrind-version = 3.18.1 vim-version = 8.2 xlsxio-version = 0.2.21 yaml-version = 0.2.5 # Xorg packages -util-macros-version = 1.19.2 -xorgproto-version = 2020.1 +util-macros-version = 1.19.3 +xorgproto-version = 2021.5 libxau-version = 1.0.9 libxdmcp-version = 1.1.3 -xcb-proto-version = 1.14 +xcb-proto-version = 1.14.1 libxcb-version = 1.14 -fontconfig-version = 2.13.1 +fontconfig-version = 2.13.94 xtrans-version = 1.4.0 -libx11-version = 1.6.9 +libx11-version = 1.7.2 libxext-version = 1.3.4 libice-version = 1.0.10 libsm-version = 1.2.3 -libxt-version = 1.2.0 +libxt-version = 1.2.1 libpthread-stubs-version = 0.4 # Version-dependent build # ----------------------- lapack-version = 3.8.0 -libgit2-version = 1.0.1 -wcslib-version = 7.3 +libgit2-version = 1.3.0 +wcslib-version = 7.7 # Netpbm's questions in the configure steps maybe change with different or # new versions. -netpbm-version = 10.86.99 +netpbm-version = 10.73.38 -# Minizip is installed with the same `zlib' tarball, and they have the same +# Minizip is installed with the same 'zlib' tarball, and they have the same # version. minizip-version = $(zlib-version) -# From version 1.2 OpenSSL may not need a manual addition, as described in -# its comments and `https://savannah.nongnu.org/bugs/?58263'. If it doesn't -# cause problems, put it back in the list of "Basic/low-level" tools. -openssl-version = 1.1.1a - -# Version 3.15.0 needs two patches, please check if they are necessary on -# any future release. -valgrind-version = 3.15.0 # Be careful with updateing hdf5 because h5py 2.10.0 doesn't work with # version 1.12.0. @@ -187,6 +193,7 @@ hdf5-version = 1.10.5 + # Python packages # --------------- # @@ -194,65 +201,147 @@ hdf5-version = 1.10.5 # # IMPORTANT: If you intend to change the version of any of the Python # modules/libraries below, please fix the hash strings of the respective -# URL in `reproduce/software/make/python.mk'. +# URL in 'reproduce/software/make/python.mk'. # -# CLASS:PYTHON (important identifier, don't modify this line.) +# CLASS:PYTHON-START (important identifier for 'awk'; don't modify this line) asn1crypto-version = 0.24.0 asteval-version = 0.9.16 -astropy-version = 4.0 -astroquery-version = 0.4 -beautifulsoup4-version = 4.7.1 +astropy-version = 5.0 +beautifulsoup4-version = 4.10.0 +beniget-version = 0.4.1 certifi-version = 2018.11.29 -cffi-version = 1.12.2 +cffi-version = 1.15.0 chardet-version = 3.0.4 corner-version = 2.0.1 -cryptography-version = 2.6.1 -cycler-version = 0.10.0 -cython-version = 0.29.21 +cycler-version = 0.11.0 +cython-version = 0.29.24 eigency-version = 1.77 emcee-version = 3.0.1 entrypoints-version = 0.3 -esutil-version = 0.6.4 +esutil-version = 0.6.9 +extension-helpers-version = 0.1 flake8-version = 3.7.8 future-version = 0.18.1 -galsim-version = 2.2.1 +galsim-version = 2.3.3 +gast-version = 0.5.3 h5py-version = 2.10.0 html5lib-version = 1.0.1 idna-version = 2.8 jeepney-version = 0.4 -keyring-version = 18.0.0 +jinja2-version = 3.0.3 kiwisolver-version = 1.0.1 lmfit-version = 0.9.14 lsstdesccoord-version = 1.2.0 +markupsafe-version = 2.0.1 matplotlib-version = 3.3.0 -mpi4py-version = 3.0.3 +mpi4py-version = 3.1.3 mpmath-version = 1.1.0 -numpy-version = 1.19.1 +numpy-version = 1.21.3 +packaging-version = 21.3 pexpect-version = 4.7.0 +pillow-version = 8.4.0 pip-version = 19.0.2 +ply-version = 3.11 pycodestyle-version = 2.5.0 pycparser-version = 2.19 +pyerfa-version = 2.0.0.1 pyflakes-version = 2.1.1 pybind11-version = 2.5.0 -pyparsing-version = 2.3.1 +pyparsing-version = 3.0.4 pypkgconfig-version = 1.5.1 python-dateutil-version = 2.8.0 +pythran-version = 0.11.0 pyyaml-version = 5.1 requests-version = 2.21.0 -scipy-version = 1.5.2 -secretstorage-version = 3.1.1 -setuptools-version = 41.6.0 +scipy-version = 1.7.3 +setuptools-version = 58.3.0 setuptools_scm-version = 3.3.3 sip_tpv-version = 1.1 -six-version = 1.12.0 +six-version = 1.16.0 soupsieve-version = 1.8 sympy-version = 1.4 -uncertainties-version = 3.1.2 +uncertainties-version = 3.1.6 urllib3-version = 1.24.1 webencodings-version = 0.5.1 +wheel-version = 0.37.0 +# CLASS:PYTHON-END (important identifier for 'awk'; don't modify this line) # Special Python modules: # # Healpy: When any Python module is requested, healpix will also build its # Python module Healpy. -healpy-version = xxxxx +# +# Bug: Healpix 3.50 doesn't yet support Python 3.10, so we are commenting +# it here. When future versions fix the problem, we'll un-comment it again. +#healpy-version = xxxxx + + + + + +# Problematic software that are currently ignored: + +# Healpix 3.80 has different installation scheme that is not yet +# implemented here, and unfortunately healpix 3.50 has conflicts with +# CFITSIO's new version macro and Python 3.10. So for now, we are ignoring +# it. +#healpix-version = 3.50 + +# Setuptools-rust crash (https://savannah.nongnu.org/bugs/index.php?61731), +# so it and its dependencies are being ignored: 'cryptography', and thus +# 'secretstorage' and thus 'keyring' and thus 'astroquery'. +#setuptools-rust-version = 1.1.2 +#cryptography-version = 36.0.1 +#secretstorage-version = 3.1.1 +#keyring-version = 18.0.0 +#astroquery-version = 0.4 + + + + + +# R-CRAN (i.e. 'R') packages +# ------------------ +# +# Similar to optional programs and libraries above. +# +# Notation: The R package and variables associated with it are by default +# called 'R-CRAN' (or 'r-cran') in Maneage, because searching on a single +# letter string 'R' is extremely inefficient. +# +# IMPORTANT: If you intend to change the version of any of the R-CRAN +# modules/libraries below, please fix the hash strings of the respective +# packages in 'reproduce/software/conf/checksums.conf'. +# +# CLASS:R-CRAN-START (important identifier for 'awk'; don't modify this line) +r-cran-cli-version = 2.5.0 +r-cran-colorspace-version = 2.0-1 +r-cran-cowplot-version = 1.1.1 +r-cran-crayon-version = 1.4.1 +r-cran-digest-version = 0.6.27 +r-cran-ellipsis-version = 0.3.2 +r-cran-fansi-version = 0.5.0 +r-cran-farver-version = 2.1.0 +r-cran-ggplot2-version = 3.3.4 +r-cran-glue-version = 1.4.2 +r-cran-gridExtra-version = 2.3 +r-cran-gtable-version = 0.3.0 +r-cran-isoband-version = 0.2.4 +r-cran-labeling-version = 0.4.2 +r-cran-lifecycle-version = 1.0.0 +r-cran-magrittr-version = 2.0.1 +r-cran-MASS-version = 7.3-54 +r-cran-mgcv-version = 1.8-36 +r-cran-munsell-version = 0.5.0 +r-cran-pillar-version = 1.6.1 +r-cran-pkgconfig-version = 2.0.3 +r-cran-R6-version = 2.5.0 +r-cran-RColorBrewer-version = 1.1-2 +r-cran-rlang-version = 0.4.11 +r-cran-scales-version = 1.1.1 +r-cran-tibble-version = 3.1.2 +r-cran-utf8-version = 1.2.1 +r-cran-vctrs-version = 0.3.8 +r-cran-viridisLite-version = 0.4.0 +r-cran-withr-version = 2.4.2 +# CLASS:R-CRAN-END (important identifier for 'awk'; don't modify this line) |