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-rwxr-xr-xconfigure2
-rw-r--r--reproduce/analysis/make/paper.mk2
-rw-r--r--reproduce/software/bibtex/astrometrynet.tex20
-rw-r--r--reproduce/software/bibtex/scamp.tex18
-rw-r--r--reproduce/software/bibtex/sextractor.tex18
-rw-r--r--reproduce/software/bibtex/swarp.tex18
-rw-r--r--reproduce/software/config/installation/versions.mk15
-rw-r--r--reproduce/software/make/basic.mk6
-rw-r--r--reproduce/software/make/high-level.mk198
-rw-r--r--reproduce/software/make/python.mk19
10 files changed, 286 insertions, 30 deletions
diff --git a/configure b/configure
index 2fa80ea..55ce4dc 100755
--- a/configure
+++ b/configure
@@ -1106,7 +1106,7 @@ hasentry=0
bibfiles="$ictdir/*"
for f in $bibfiles; do if [ -f $f ]; then hasentry=1; break; fi; done;
-# Make sure we start with an empty file.
+# Make sure we start with an empty output file.
pkgbib=$mtexdir/dependencies-bib.tex
echo "" > $pkgbib
diff --git a/reproduce/analysis/make/paper.mk b/reproduce/analysis/make/paper.mk
index 5378ee3..549b7c0 100644
--- a/reproduce/analysis/make/paper.mk
+++ b/reproduce/analysis/make/paper.mk
@@ -90,7 +90,7 @@ $(mtexdir)/project.tex: $(foreach s, $(subst paper,,$(makesrc)), $(mtexdir)/$(s)
# recipe and the `paper.pdf' recipe. But if `tex/src/references.tex' hasn't
# been modified, we don't want to re-build the bibliography, only the final
# PDF.
-$(texbdir)/paper.bbl: tex/src/references.tex \
+$(texbdir)/paper.bbl: tex/src/references.tex $(mtexdir)/dependencies-bib.tex \
| $(tikzdir) $(texbdir) $(mtexdir)/project.tex
# If `$(mtexdir)/project.tex' is empty, don't build PDF.
@macros=$$(cat $(mtexdir)/project.tex)
diff --git a/reproduce/software/bibtex/astrometrynet.tex b/reproduce/software/bibtex/astrometrynet.tex
new file mode 100644
index 0000000..8bbaceb
--- /dev/null
+++ b/reproduce/software/bibtex/astrometrynet.tex
@@ -0,0 +1,20 @@
+%% Copyright (C) 2019 Raul Infante-Sainz <infantesainz@gmail.com>
+%%
+%% Copying and distribution of this file, with or without modification,
+%% are permitted in any medium without royalty provided the copyright
+%% notice and this notice are preserved. This file is offered as-is,
+%% without any warranty.
+
+@ARTICLE{astrometrynet,
+ doi = {10.1088/0004-6256/139/5/1782},
+ url = {https://doi.org/10.1088%2F0004-6256%2F139%2F5%2F1782},
+ year = 2010,
+ month = {mar},
+ publisher = {{IOP} Publishing},
+ volume = {139},
+ number = {5},
+ pages = {1782},
+ author = {Dustin Lang and David W. Hogg and Keir Mierle and Michael Blanton and Sam Roweis},
+ title = {{ASTROMETRY}.{NET}: {BLIND} {ASTROMETRIC} {CALIBRATION} {OF} {ARBITRARY} {ASTRONOMICAL} {IMAGES}},
+ journal = {AJ}
+}
diff --git a/reproduce/software/bibtex/scamp.tex b/reproduce/software/bibtex/scamp.tex
new file mode 100644
index 0000000..8d825d7
--- /dev/null
+++ b/reproduce/software/bibtex/scamp.tex
@@ -0,0 +1,18 @@
+%% Copyright (C) 2019 Raul Infante-Sainz <infantesainz@gmail.com>
+%%
+%% Copying and distribution of this file, with or without modification,
+%% are permitted in any medium without royalty provided the copyright
+%% notice and this notice are preserved. This file is offered as-is,
+%% without any warranty.
+
+@ARTICLE{scamp,
+ author = {{Bertin}, E.},
+ title = "{Automatic Astrometric and Photometric Calibration with SCAMP}",
+ year = 2006,
+ journal= {ASPConf},
+ volume = 351,
+ month = jul,
+ pages = {112},
+ adsurl = {http://cdsads.u-strasbg.fr/abs/2006ASPC..351..112B},
+ adsnote = {Provided by the SAO/NASA Astrophysics Data System}
+}
diff --git a/reproduce/software/bibtex/sextractor.tex b/reproduce/software/bibtex/sextractor.tex
new file mode 100644
index 0000000..90d3eff
--- /dev/null
+++ b/reproduce/software/bibtex/sextractor.tex
@@ -0,0 +1,18 @@
+%% Copyright (C) 2019 Raul Infante-Sainz <infantesainz@gmail.com>
+%%
+%% Copying and distribution of this file, with or without modification,
+%% are permitted in any medium without royalty provided the copyright
+%% notice and this notice are preserved. This file is offered as-is,
+%% without any warranty.
+
+@article{sextractor,
+ author = {{Bertin, E.} and {Arnouts, S.}},
+ title = {SExtractor: Software for source extraction},
+ DOI= "10.1051/aas:1996164",
+ url= "https://doi.org/10.1051/aas:1996164",
+ journal = {AASS},
+ year = 1996,
+ volume = 117,
+ number = 2,
+ pages = "393",
+}
diff --git a/reproduce/software/bibtex/swarp.tex b/reproduce/software/bibtex/swarp.tex
new file mode 100644
index 0000000..3ff9b91
--- /dev/null
+++ b/reproduce/software/bibtex/swarp.tex
@@ -0,0 +1,18 @@
+%% Copyright (C) 2019 Raul Infante-Sainz <infantesainz@gmail.com>
+%%
+%% Copying and distribution of this file, with or without modification,
+%% are permitted in any medium without royalty provided the copyright
+%% notice and this notice are preserved. This file is offered as-is,
+%% without any warranty.
+
+@ARTICLE{swarp,
+ author = {{Bertin}, E. and {Mellier}, Y. and {Radovich}, M. and {Missonnier}, G. and
+ {Didelon}, P. and {Morin}, B.},
+ journal = {ASPConf},
+ title = "{The TERAPIX Pipeline}",
+ year = {2002},
+ volume = {281},
+ pages = {228},
+ adsurl = {http://adsabs.harvard.edu/abs/2002ASPC..281..228B},
+ adsnote = {Provided by the SAO/NASA Astrophysics Data System}
+}
diff --git a/reproduce/software/config/installation/versions.mk b/reproduce/software/config/installation/versions.mk
index 149f9ae..5761165 100644
--- a/reproduce/software/config/installation/versions.mk
+++ b/reproduce/software/config/installation/versions.mk
@@ -17,9 +17,12 @@
# <http://www.gnu.org/licenses/>.
# C/C++ programs and libraries.
+astrometrynet-version = 0.77
atlas-version = 3.10.3
bash-version = 5.0
binutils-version = 2.31.1
+cairo-version = 1.16.0
+cdsclient-version = 3.84
cfitsio-version = 3.45
cmake-version = 3.14.2
coreutils-version = 8.31
@@ -44,9 +47,9 @@ isl-version = 0.18
libbsd-version = 0.9.1
libffi-version = 3.2.1
libjpeg-version = v9b
-libpng-version = 1.6.36
libtiff-version = 4.0.10
libtool-version = 2.4.6
+libxml2-version = 2.9.9
lzip-version = 1.20
m4-version = 1.4.18
make-version = 4.2.90
@@ -54,14 +57,20 @@ metastore-version = 1.1.2-23-fa9170b
mpfr-version = 4.0.2
mpc-version = 1.1.0
ncurses-version = 6.1
+netpbm-version = 10.47.72
openblas-version = 0.3.5
openmpi-version = 4.0.1
openssl-version = 1.1.1a
patchelf-version = 0.9
+pixman-version = 0.38.0
pkgconfig-version = 0.29.2
python-version = 3.7.3
readline-version = 8.0
+scamp-version = 2.6.7
sed-version = 4.7
+sextractor-version = 2.25.0
+swarp-version = 2.38.0
+swig-version = 3.0.12
tar-version = 1.32
unzip-version = 6.0
wget-version = 1.20.3
@@ -75,10 +84,12 @@ zlib-version = 1.2.11
#
# When updating the version of these libraries, please look into the build
# rule first: In one way or another, the version string becomes necessary
-# during their build and must be accounted for.
+# during their build and must be accounted for. In particular:
+# `libpng' is downgraded because `netpbm' requires `libpng' version < 1.5
bzip2-version = 1.0.6
lapack-version = 3.8.0
libgit2-version = 0.26.0
+libpng-version = 1.4.22
wcslib-version = 6.2
# Python packages
diff --git a/reproduce/software/make/basic.mk b/reproduce/software/make/basic.mk
index cfa05d2..6e6550e 100644
--- a/reproduce/software/make/basic.mk
+++ b/reproduce/software/make/basic.mk
@@ -830,6 +830,7 @@ ifeq ($(host_cc),1)
gcc-prerequisites =
else
gcc-prerequisites = $(tdir)/gcc-$(gcc-version).tar.xz \
+ $(ibidir)/binutils \
$(ilidir)/isl \
$(ilidir)/mpc
endif
@@ -854,6 +855,8 @@ $(ibidir)/gcc: $(gcc-prerequisites) \
$(call makelink,gcc); \
$(call makelink,g++,mandatory); \
$(call makelink,gfortran,mandatory); \
+ $(call makelink,strip,mandatory); \
+ ln -sf $$(which gcc) $(ibdir)/cc; \
ccinfo=$$(gcc --version | awk 'NR==1'); \
echo "C compiler (""$$ccinfo"")" > $@; \
else \
@@ -898,6 +901,7 @@ $(ibidir)/gcc: $(gcc-prerequisites) \
patchelf --set-rpath $(ildir) $$f; \
fi; \
done; \
- fi \
+ fi; \
+ ln -sf $(ibdir)/gcc $(ibdir)/cc \
&& echo "GNU Compiler Collection (GCC) $(gcc-version)" > $@; \
fi
diff --git a/reproduce/software/make/high-level.mk b/reproduce/software/make/high-level.mk
index f7b1f4f..cff2ff8 100644
--- a/reproduce/software/make/high-level.mk
+++ b/reproduce/software/make/high-level.mk
@@ -50,9 +50,18 @@ ipydir = $(BDIR)/software/installed/version-info/python
# high level software depend on it. The current rule for ATLAS is tested
# successfully on Mac (only static) and GNU/Linux (shared and static). But,
# since it takes a few hours to build, it is not currently a target.
-top-level-libraries = # atlas
-top-level-python = astroquery matplotlib
-top-level-programs = gnuastro metastore
+
+# About available software/libraries: currently the template has rules for
+# installing software that are widely used in science, and in particular in
+# astrophysics. However, not all of these software will be used for all
+# people interested in this template. Due to that, we put some of what we
+# consider the main software as optional software of the template (to see a
+# complete list of all software/libraries, look at the version number
+# Makefile). If that software is needed, just remove the comment `#' to
+# install it.
+top-level-libraries = # atlas
+top-level-programs = gnuastro metastore # astrometrynet scamp sextractor swarp
+top-level-python = numpy # astropy astroquery matplotlib scipy
all: $(foreach p, $(top-level-libraries), $(ilidir)/$(p)) \
$(foreach p, $(top-level-programs), $(ibidir)/$(p)) \
$(foreach p, $(top-level-python), $(ipydir)/$(p)) \
@@ -114,8 +123,11 @@ include reproduce/software/make/python.mk
# convention, but include the name/version in their tarball names with
# another format, we'll do the modification before the download so the
# downloaded file has our desired format.
-tarballs = $(foreach t, cfitsio-$(cfitsio-version).tar.gz \
+tarballs = $(foreach t, astrometry.net-$(astrometrynet-version).tar.gz \
atlas-$(atlas-version).tar.bz2 \
+ cairo-$(cairo-version).tar.xz \
+ cdsclient-$(cdsclient-version).tar.gz \
+ cfitsio-$(cfitsio-version).tar.gz \
cmake-$(cmake-version).tar.gz \
curl-$(curl-version).tar.gz \
freetype-$(freetype-version).tar.gz \
@@ -131,9 +143,16 @@ tarballs = $(foreach t, cfitsio-$(cfitsio-version).tar.gz \
libbsd-$(libbsd-version).tar.xz \
libpng-$(libpng-version).tar.xz \
libgit2-$(libgit2-version).tar.gz \
+ libxml2-$(libxml2-version).tar.gz \
metastore-$(metastore-version).tar.gz \
+ netpbm-$(netpbm-version).tgz \
openmpi-$(openmpi-version).tar.gz \
openblas-$(openblas-version).tar.gz \
+ pixman-$(pixman-version).tar.gz \
+ scamp-$(scamp-version).tar.lz \
+ sextractor-$(sextractor-version).tar.lz \
+ swarp-$(swarp-version).tar.gz \
+ swig-$(swig-version).tar.gz \
tiff-$(libtiff-version).tar.gz \
wcslib-$(wcslib-version).tar.bz2 \
, $(tdir)/$(t) )
@@ -157,9 +176,12 @@ $(tarballs): $(tdir)/%: | $(lockdir)
: (l==2 ? "%d00\n" \
: "%d000\n") ), $$1)}')
w=https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/cfitsio$$v.tar.gz
+ elif [ $$n = astrometry ]; then w=http://astrometry.net/downloads
elif [ $$n = atlas ]; then
mergenames=0
w=https://sourceforge.net/projects/math-atlas/files/Stable/$(atlas-version)/atlas$(atlas-version).tar.bz2/download
+ elif [ $$n = cairo ]; then w=https://www.cairographics.org/releases
+ elif [ $$n = cdsclient ]; then w=http://cdsarc.u-strasbg.fr/ftp/pub/sw
elif [ $$n = cmake ]; then
mergenames=0
majv=$$(echo $(cmake-version) \
@@ -185,7 +207,11 @@ $(tarballs): $(tdir)/%: | $(lockdir)
elif [ $$n = libgit ]; then
mergenames=0
w=https://github.com/libgit2/libgit2/archive/v$(libgit2-version).tar.gz
+ elif [ $$n = libxml ]; then w=ftp://xmlsoft.org/libxml2
elif [ $$n = metastore ]; then w=http://akhlaghi.org/src
+ elif [ $$n = netpbm ]; then
+ mergenames=0
+ w=https://sourceforge.net/projects/netpbm/files/super_stable/$(netpbm-version)/netpbm-$(netpbm-version).tgz/download
elif [ $$n = openblas ]; then
mergenames=0
w=https://github.com/xianyi/OpenBLAS/archive/v$(openblas-version).tar.gz
@@ -193,6 +219,11 @@ $(tarballs): $(tdir)/%: | $(lockdir)
mergenames=0
majorver=$$(echo $(openmpi-version) | sed -e 's/\./ /g' | awk '{printf("%d.%d", $$1, $$2)}')
w=https://download.open-mpi.org/release/open-mpi/v$$majorver/$*
+ elif [ $$n = pixman ]; then w=https://www.cairographics.org/releases
+ elif [ $$n = scamp ]; then w=http://akhlaghi.org/src
+ elif [ $$n = sextractor ]; then w=http://akhlaghi.org/src
+ elif [ $$n = swarp ]; then w=https://www.astromatic.net/download/swarp
+ elif [ $$n = swig ]; then w=https://sourceforge.net/projects/swig/files/swig/swig-$(swig-version)
elif [ $$n = tiff ]; then w=https://download.osgeo.org/libtiff
elif [ $$n = wcslib ]; then w=ftp://ftp.atnf.csiro.au/pub/software/wcslib
else
@@ -261,6 +292,13 @@ $(ilidir)/cfitsio: $(tdir)/cfitsio-$(cfitsio-version).tar.gz \
&& rm $$customtar \
&& echo "CFITSIO $(cfitsio-version)" > $@
+$(ilidir)/cairo: $(tdir)/cairo-$(cairo-version).tar.xz \
+ $(ilidir)/freetype \
+ $(ilidir)/libpng \
+ $(ilidir)/pixman
+ $(call gbuild, $<, cairo-$(cairo-version), static) \
+ && echo "Cairo $(cairo-version)" > $@
+
$(ilidir)/gsl: $(tdir)/gsl-$(gsl-version).tar.gz
$(call gbuild, $<, gsl-$(gsl-version), static) \
&& echo "GNU Scientific Library $(gsl-version)" > $@
@@ -277,7 +315,7 @@ $(ilidir)/freetype: $(tdir)/freetype-$(freetype-version).tar.gz \
$(call gbuild, $<, freetype-$(freetype-version), static) \
&& echo "FreeType $(freetype-version)" > $@
-$(ilidir)/hdf5: $(tdir)/hdf5-$(hdf5-version).tar.gz \
+$(ilidir)/hdf5: $(tdir)/hdf5-$(hdf5-version).tar.gz \
$(ilidir)/openmpi
export CC=mpicc; \
export FC=mpif90; \
@@ -298,6 +336,21 @@ $(ilidir)/libpng: $(tdir)/libpng-$(libpng-version).tar.xz
$(call gbuild, $<, libpng-$(libpng-version), static) \
&& echo "Libpng $(libpng-version)" > $@
+$(ilidir)/libxml2: $(tdir)/libxml2-$(libxml2-version).tar.gz
+ # The libxml2 tarball also contains Python bindings which are built and
+ # installed to a system directory by default. If you don't need the Python
+ # bindings, the easiest solution is to compile without Python support:
+ # ./configure --without-python
+ # If you really need the Python bindings, try the
+ # --with-python-install-dir=DIR option
+ $(call gbuild, $<, libxml2-$(libxml2-version), static, \
+ --without-python) \
+ && echo "Libxml2 $(libxml2-version)" > $@
+
+$(ilidir)/pixman: $(tdir)/pixman-$(pixman-version).tar.gz
+ $(call gbuild, $<, pixman-$(pixman-version), static) \
+ && echo "Pixman $(pixman-version)" > $@
+
$(ilidir)/libtiff: $(tdir)/tiff-$(libtiff-version).tar.gz \
$(ilidir)/libjpeg
$(call gbuild, $<, tiff-$(libtiff-version), static, \
@@ -306,7 +359,7 @@ $(ilidir)/libtiff: $(tdir)/tiff-$(libtiff-version).tar.gz \
$(ilidir)/openmpi: $(tdir)/openmpi-$(openmpi-version).tar.gz
$(call gbuild, $<, openmpi-$(openmpi-version), static, , V=1) \
- && echo "OpenMPI $(openmpi-version)" > $@
+ && echo "Open MPI $(openmpi-version)" > $@
$(ilidir)/atlas: $(tdir)/atlas-$(atlas-version).tar.bz2 \
$(tdir)/lapack-$(lapack-version).tar.gz
@@ -463,6 +516,51 @@ $(ilidir)/wcslib: $(tdir)/wcslib-$(wcslib-version).tar.bz2 \
# Programs
# --------
#
+# Astrometry-net contains a lot of programs. We need to specify the
+# installation directory and the Python executable (by default it will look
+# for /usr/bin/python)
+$(ibidir)/astrometrynet: $(tdir)/astrometry.net-$(astrometrynet-version).tar.gz \
+ $(ilidir)/cairo \
+ $(ilidir)/cfitsio \
+ $(ilidir)/gsl \
+ $(ilidir)/libjpeg \
+ $(ilidir)/libpng \
+ $(ibidir)/netpbm \
+ $(ipydir)/numpy \
+ $(ibidir)/python \
+ $(ibidir)/swig \
+ $(ilidir)/wcslib
+ cd $(ddir) \
+ && if ! tar xf $<; then echo; echo "Tar error"; exit 1; fi \
+ && cd astrometry.net-$(astrometrynet-version) \
+ && make \
+ && make py \
+ && make extra \
+ && make install INSTALL_DIR=$(idir) PYTHON_SCRIPT="$(ibdir)/python" \
+ && cd .. \
+ && rm -rf astrometry.net-$(astrometrynet-version) \
+ && cp $(dtexdir)/astrometrynet.tex $(ictdir)/ \
+ && echo "Astrometry.net $(astrometrynet-version) \citep{astrometrynet}" > $@
+
+# cdsclient is a set of software written in c to interact with astronomical
+# database servers. It is a dependency of `scamp' to be able to download
+# reference catalogues.
+# NOTE: we do not use a convencional `gbuild' installation because the
+# programs are scripts and we need to touch them before installing.
+# Otherwise this software will be re-built each time the configure step is
+# invoked.
+$(ibidir)/cdsclient: $(tdir)/cdsclient-$(cdsclient-version).tar.gz
+ cd $(ddir) \
+ && tar xf $< \
+ && cd cdsclient-$(cdsclient-version) \
+ && touch * \
+ && ./configure --prefix=$(idir) \
+ && make \
+ && make install \
+ && cd .. \
+ && rm -rf cdsclient-$(cdsclient-version) \
+ && echo "cdsclient $(cdsclient-version)" > $@
+
# CMake can be built with its custom `./bootstrap' script.
$(ibidir)/cmake: $(tdir)/cmake-$(cmake-version).tar.gz \
$(ibidir)/curl
@@ -613,16 +711,84 @@ endif
&& cp $(dtexdir)/gnuastro.tex $(ictdir)/ \
&& echo "GNU Astronomy Utilities $(gnuastro-version) \citep{gnuastro}" > $@
-
-
-
-
-
-
-
-
-
-
+# Netpbm is a prerequisite of Astrometry-net, it contains a lot of programs.
+# This program has a crazy dialogue installation which is override using the
+# printf statment. Each `\n' is a new question that the installation process
+# ask to the user. We give all answers with a pipe to the scripts (configure
+# and install). The questions are different depending on the system (tested
+# on GNU/Linux and Mac OS).
+$(ibidir)/netpbm: $(tdir)/netpbm-$(netpbm-version).tgz \
+ $(ilidir)/libjpeg \
+ $(ilidir)/libpng \
+ $(ilidir)/libtiff \
+ $(ilidir)/libxml2 \
+ $(ibidir)/unzip
+ if [ x$(on_mac_os) = xyes ]; then \
+ answers='\n\n\n\n\n\n\n\n\n\n\n\nnone\n\n\n'; \
+ else \
+ answers='\n\n\n\ny\n\n\n\n\n\n\n\n\n\n\n\n\n'; \
+ fi; \
+ cd $(ddir) \
+ && unpackdir=netpbm-$(netpbm-version) \
+ && rm -rf $$unpackdir \
+ && if ! tar xf $<; then echo; echo "Tar error"; exit 1; fi \
+ && cd $$unpackdir \
+ && printf "$$answers" | ./configure \
+ && make \
+ && rm -rf $(ddir)/$$unpackdir/install \
+ && make package pkgdir=$(ddir)/$$unpackdir/install \
+ && printf "$(ddir)/$$unpackdir/install\n$(idir)\n\n\nN\n\n\n\n\nN\n\n" \
+ | ./installnetpbm \
+ && cd .. \
+ && rm -rf $$unpackdir \
+ && echo "Netpbm $(netpbm-version)" > $@
+
+# SCAMP documentation says ATLAS is a mandatory prerequisite for using
+# SCAMP. We have ATLAS into the project but there are some problems with the
+# libraries that are not yet solved. However, we tried to install it with
+# the option --enable-openblas and it worked (same issue happened with
+# `sextractor'.
+$(ibidir)/scamp: $(tdir)/scamp-$(scamp-version).tar.lz \
+ $(ilidir)/fftw \
+ $(ilidir)/openblas \
+ $(ibidir)/cdsclient
+ $(call gbuild, $<, scamp-$(scamp-version), static, \
+ --enable-threads --enable-openblas \
+ --with-fftw-libdir=$(idir) \
+ --with-fftw-incdir=$(idir)/include \
+ --with-openblas-libdir=$(ildir) \
+ --with-openblas-incdir=$(idir)/include) \
+ && cp $(dtexdir)/scamp.tex $(ictdir)/ \
+ && echo "SCAMP $(scamp-version) \citep{scamp}" > $@
+
+# Sextractor crashes complaining about not linking with some ATLAS
+# libraries. But we can override this issue since we have Openblas
+# installed, it is just necessary to explicity tell sextractor to use it in
+# the configuration step.
+$(ibidir)/sextractor: $(tdir)/sextractor-$(sextractor-version).tar.lz \
+ $(ilidir)/openblas \
+ $(ilidir)/fftw
+ $(call gbuild, $<, sextractor-$(sextractor-version), static, \
+ --enable-threads --enable-openblas \
+ --with-openblas-libdir=$(ildir) \
+ --with-openblas-incdir=$(idir)/include) \
+ && ln -fs $(ibdir)/sex $(ibdir)/sextractor \
+ && cp $(dtexdir)/sextractor.tex $(ictdir)/ \
+ && echo "Sextractor $(sextractor-version) \citep{sextractor}" > $@
+
+$(ibidir)/swarp: $(tdir)/swarp-$(swarp-version).tar.gz \
+ $(ilidir)/fftw
+ $(call gbuild, $<, swarp-$(swarp-version), static, \
+ --enable-threads) \
+ && cp $(dtexdir)/swarp.tex $(ictdir)/ \
+ && echo "SWarp $(swarp-version) \citep{swarp}" > $@
+
+$(ibidir)/swig: $(tdir)/swig-$(swig-version).tar.gz
+ # Option --without-pcre was a suggestion once the configure step was
+ # tried and it failed. It was not recommended but it works!
+ # pcr is a dependency of swig
+ $(call gbuild, $<, swig-$(swig-version), static, --without-pcre) \
+ && echo "Swig $(swig-version)" > $@
diff --git a/reproduce/software/make/python.mk b/reproduce/software/make/python.mk
index 5ec99f0..22c6284 100644
--- a/reproduce/software/make/python.mk
+++ b/reproduce/software/make/python.mk
@@ -214,13 +214,13 @@ $(pytarballs): $(tdir)/%:
# While this Makefile is for Python programs, in some cases, we need
# certain programs (like Python itself), or libraries for the modules.
$(ilidir)/libffi: $(tdir)/libffi-$(libffi-version).tar.gz
- $(call gbuild, $<, libffi-$(libffi-version)) \
+ $(call gbuild, $<, libffi-$(libffi-version)) \
echo "Libffi $(libffi-version)" > $@
-$(ibidir)/python3: $(tdir)/python-$(python-version).tar.gz \
- $(ilidir)/libffi
- # On Mac systems, the build complains about `clang' specific
- # features, so we can't use our own GCC build here.
+$(ibidir)/python: $(tdir)/python-$(python-version).tar.gz \
+ $(ilidir)/libffi
+ # On Mac systems, the build complains about `clang' specific
+ # features, so we can't use our own GCC build here.
if [ x$(on_mac_os) = xyes ]; then \
export CC=clang; \
export CXX=clang++; \
@@ -231,7 +231,8 @@ $(ibidir)/python3: $(tdir)/python-$(python-version).tar.gz \
--enable-shared) \
&& v=$$(echo $(python-version) | awk 'BEGIN{FS="."} \
{printf "%d.%d\n", $$1, $$2}') \
- && ln -s $(ildir)/python$$v $(ildir)/python \
+ && ln -sf $(ildir)/python$$v $(ildir)/python \
+ && ln -sf $(ibdir)/python$$v $(ibdir)/python \
&& rm -rf $(ipydir) \
&& mkdir $(ipydir) \
&& echo "Python $(python-version)" > $@
@@ -259,8 +260,8 @@ pybuild = cd $(ddir); rm -rf $(3); \
-e 's|@INCDIR[@]|'"$(idir)/include"'|' \
$(4) > site.cfg; \
fi; \
- python3 setup.py build \
- && python3 setup.py install \
+ python setup.py build \
+ && python setup.py install \
&& cd .. \
&& rm -rf $(3) \
&& echo "$(5)" > $@
@@ -475,7 +476,7 @@ $(ipydir)/secretstorage: $(tdir)/secretstorage-$(secretstorage-version).tar.gz \
SecretStorage $(secretstorage-version))
$(ipydir)/setuptools: $(tdir)/setuptools-$(setuptools-version).zip \
- $(ibidir)/python3 \
+ $(ibidir)/python \
$(ibidir)/unzip
$(call pybuild, unzip, $<, setuptools-$(setuptools-version), ,\
Setuptools $(setuptools-version))
generated by cgit v1.2.1 (git 2.18.0) at 2024-07-02 10:24:33 +0000